Lag0029752 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029752
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionzinc finger protein ZAT5-like
Locationchr8: 41801048 .. 41801428 (-)
RNA-Seq ExpressionLag0029752
SyntenyLag0029752
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCGATCACCGGCCAATGAGCAATTCAACAACAACATTTCAAGGCCATTCGATCAGCTTCGTTTGAGCCGAAGTGAGTATCACAACAAGAAGTTCAAATTGGTGAATAGTAACAACAAGGTCCACGAGTGCGCCGTTTGTGGCGCCAGGTTCATGTCCGGCCAGGCCCTCGGCGGCCACGTGCGGCGCCACCGCCGCGGCGACGACGGAGGTTTTGAAGATTCCGGCGAAATGGAACGACGTCGTGTTAAGAAGCAGAGAAGTAATTTGTTGTGTTTGGATTTGGATCTGAATCTTCCGGCCCCTGAAGATGATAAGAGAGATCGATCGAGTGTCGTTGGAATGGCTGCCCCGGCTTTGTTGGGCTGCCATTACTGA

mRNA sequence

ATGCTCCGATCACCGGCCAATGAGCAATTCAACAACAACATTTCAAGGCCATTCGATCAGCTTCGTTTGAGCCGAAGTGAGTATCACAACAAGAAGTTCAAATTGGTGAATAGTAACAACAAGGTCCACGAGTGCGCCGTTTGTGGCGCCAGGTTCATGTCCGGCCAGGCCCTCGGCGGCCACGTGCGGCGCCACCGCCGCGGCGACGACGGAGGTTTTGAAGATTCCGGCGAAATGGAACGACGTCGTGTTAAGAAGCAGAGAAGTAATTTGTTGTGTTTGGATTTGGATCTGAATCTTCCGGCCCCTGAAGATGATAAGAGAGATCGATCGAGTGTCGTTGGAATGGCTGCCCCGGCTTTGTTGGGCTGCCATTACTGA

Coding sequence (CDS)

ATGCTCCGATCACCGGCCAATGAGCAATTCAACAACAACATTTCAAGGCCATTCGATCAGCTTCGTTTGAGCCGAAGTGAGTATCACAACAAGAAGTTCAAATTGGTGAATAGTAACAACAAGGTCCACGAGTGCGCCGTTTGTGGCGCCAGGTTCATGTCCGGCCAGGCCCTCGGCGGCCACGTGCGGCGCCACCGCCGCGGCGACGACGGAGGTTTTGAAGATTCCGGCGAAATGGAACGACGTCGTGTTAAGAAGCAGAGAAGTAATTTGTTGTGTTTGGATTTGGATCTGAATCTTCCGGCCCCTGAAGATGATAAGAGAGATCGATCGAGTGTCGTTGGAATGGCTGCCCCGGCTTTGTTGGGCTGCCATTACTGA

Protein sequence

MLRSPANEQFNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRRGDDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGMAAPALLGCHY
Homology
BLAST of Lag0029752 vs. NCBI nr
Match: XP_038885865.1 (zinc finger protein ZAT5-like [Benincasa hispida])

HSP 1 Score: 163.7 bits (413), Expect = 1.0e-36
Identity = 83/119 (69.75%), Postives = 94/119 (78.99%), Query Frame = 0

Query: 8   EQFNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRR 67
           ++ NNN S  FDQLR+SRS+Y+N K KLVN   KVHEC+VCGA F+SGQALGGH+RRHRR
Sbjct: 189 QRLNNNDSNRFDQLRMSRSDYYN-KLKLVNHRIKVHECSVCGAEFISGQALGGHMRRHRR 248

Query: 68  GDDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGMAAPALLGCHY 127
           G  G   DS E+ERR  KKQRSNLL LDLDLN PAPEDDKRD+S VV MAA  L+ CHY
Sbjct: 249 GCGGASRDSSEIERRCPKKQRSNLLRLDLDLNFPAPEDDKRDKSGVVAMAATNLVDCHY 306

BLAST of Lag0029752 vs. NCBI nr
Match: XP_011650172.2 (zinc finger protein ZAT5 [Cucumis sativus] >KAE8652011.1 hypothetical protein Csa_006824 [Cucumis sativus])

HSP 1 Score: 147.9 bits (372), Expect = 5.9e-32
Identity = 79/130 (60.77%), Postives = 94/130 (72.31%), Query Frame = 0

Query: 4   SPANEQF------NNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQA 63
           SP N+Q       NNN+S   DQ+R+SR+ Y+N   K  N   KVHEC+VCGA F+SGQA
Sbjct: 140 SPPNKQLQQRFNNNNNVSNQLDQVRMSRTVYYN-NLKPANHRIKVHECSVCGADFISGQA 199

Query: 64  LGGHVRRHRRGDDGG-FEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGM 123
           LGGH+RRHRRG  GG   DS E++ R  KKQRSNLLCLDL+LNLPAPE+DKR+ S VV M
Sbjct: 200 LGGHMRRHRRGYGGGASRDSSEIDGRCSKKQRSNLLCLDLNLNLPAPENDKRENSGVVAM 259

Query: 124 AAPALLGCHY 127
           AA  L+ CHY
Sbjct: 260 AATNLVDCHY 268

BLAST of Lag0029752 vs. NCBI nr
Match: TYJ99965.1 (zinc finger protein ZAT5-like [Cucumis melo var. makuwa])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 77/129 (59.69%), Postives = 93/129 (72.09%), Query Frame = 0

Query: 4   SPANEQ------FNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQA 63
           SPAN+Q      +NNN+S   DQ+R+SRS+Y+N      N   KVHEC+VCGA F+SGQA
Sbjct: 112 SPANKQHEQRFNYNNNVSNQLDQVRMSRSDYYNNFKSSNNHKIKVHECSVCGADFISGQA 171

Query: 64  LGGHVRRHRRGDDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGMA 123
           LGGH+RRHRRG  G   DS E++RR  KKQRSNLLCLDL+LNLPAPE+DKR+    V M 
Sbjct: 172 LGGHMRRHRRGCGGTSRDSSEIDRRCSKKQRSNLLCLDLNLNLPAPENDKRENLG-VAMG 231

Query: 124 APALLGCHY 127
           A  L+ CHY
Sbjct: 232 ATNLVDCHY 239

BLAST of Lag0029752 vs. NCBI nr
Match: XP_008456545.1 (PREDICTED: zinc finger protein ZAT5-like [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 7.7e-32
Identity = 77/129 (59.69%), Postives = 93/129 (72.09%), Query Frame = 0

Query: 4   SPANEQ------FNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQA 63
           SPAN+Q      +NNN+S   DQ+R+SRS+Y+N      N   KVHEC+VCGA F+SGQA
Sbjct: 136 SPANKQHEQRFNYNNNVSNQLDQVRMSRSDYYNNFKSSNNHKIKVHECSVCGADFISGQA 195

Query: 64  LGGHVRRHRRGDDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGMA 123
           LGGH+RRHRRG  G   DS E++RR  KKQRSNLLCLDL+LNLPAPE+DKR+    V M 
Sbjct: 196 LGGHMRRHRRGCGGTSRDSSEIDRRCSKKQRSNLLCLDLNLNLPAPENDKRENLG-VAMG 255

Query: 124 APALLGCHY 127
           A  L+ CHY
Sbjct: 256 ATNLVDCHY 263

BLAST of Lag0029752 vs. NCBI nr
Match: XP_022939503.1 (zinc finger protein ZAT5-like [Cucurbita moschata])

HSP 1 Score: 119.0 bits (297), Expect = 2.9e-23
Identity = 64/119 (53.78%), Postives = 80/119 (67.23%), Query Frame = 0

Query: 8   EQFNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRR 67
           ++ NN IS PFD LR++R+ Y+          +K HE +VCG+ F S QAL GH+RRHRR
Sbjct: 134 QRLNNTISSPFDPLRMNRTGYY----------HKTHEFSVCGSGFTSVQALSGHMRRHRR 193

Query: 68  GDDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVVGMAAPALLGCHY 127
           G      DSGE+  RR ++ RSNLLCL+LDLNLPA E+DKRDRS VV MAA   +  HY
Sbjct: 194 GCG---RDSGEIAHRRPQRHRSNLLCLELDLNLPAAEEDKRDRSGVVSMAAMDRVSSHY 239

BLAST of Lag0029752 vs. ExPASy Swiss-Prot
Match: Q681X4 (Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.4e-15
Identity = 53/139 (38.13%), Postives = 74/139 (53.24%), Query Frame = 0

Query: 3   RSPANEQFNNNISRPFDQLRLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHV 62
           +S A+E+  N+        ++S S   ++   ++N  NKVHEC++CG+ F SGQALGGH+
Sbjct: 156 KSSASEEGQNS------HFKVSGSALASQASNIINKANKVHECSICGSEFTSGQALGGHM 215

Query: 63  RRHRRG-------------DDGGFEDSGEMERRRVKKQRSNLLCLDLDLNLPAPEDDKRD 122
           RRHR                    E+  E+   R  +Q+     L LDLNLPAPEDD R+
Sbjct: 216 RRHRTAVTTISPVAATAEVSRNSTEEEIEINIGRSMEQQRKY--LPLDLNLPAPEDDLRE 275

Query: 123 R--SSVVGMAAPALLGCHY 127
                +V  A PAL+ CHY
Sbjct: 276 SKFQGIVFSATPALIDCHY 286

BLAST of Lag0029752 vs. ExPASy Swiss-Prot
Match: Q39092 (Zinc finger protein ZAT1 OS=Arabidopsis thaliana OX=3702 GN=ZAT1 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.4e-06
Identity = 35/92 (38.04%), Postives = 47/92 (51.09%), Query Frame = 0

Query: 22  RLSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRRGDDGGFEDSGEMER 81
           +L   E   KK K  +S+   HEC +C   F SGQALGGH R H   ++       E  R
Sbjct: 191 QLGSDELKKKKKKSTSSH---HECPICAKVFTSGQALGGHKRSHASANN-------EFTR 250

Query: 82  RRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSV 114
                 RS ++   +DLNLPAP +++   SSV
Sbjct: 251 ------RSGIIISLIDLNLPAPSEEEEMASSV 266

BLAST of Lag0029752 vs. ExPASy Swiss-Prot
Match: Q9M202 (Zinc finger protein ZAT9 OS=Arabidopsis thaliana OX=3702 GN=ZAT9 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-05
Identity = 36/91 (39.56%), Postives = 49/91 (53.85%), Query Frame = 0

Query: 24  SRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRRGDDGGFEDSGEMERRR 83
           S +EY N    +V    ++HEC +C   F SGQALGGH R H      G  +    ++RR
Sbjct: 209 SETEYDN----VVVVAKRIHECPICLRVFASGQALGGHKRSH------GVGNLSVNQQRR 268

Query: 84  VKKQRSNLLCLDLDLNLPAPEDDKRDRSSVV 115
           V +  S    + +DLNLPAP ++  D  SVV
Sbjct: 269 VHRNESVKQRM-IDLNLPAPTEE--DEVSVV 286

BLAST of Lag0029752 vs. ExPASy Swiss-Prot
Match: Q9SHD0 (Zinc finger protein ZAT4 OS=Arabidopsis thaliana OX=3702 GN=ZAT4 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 6.4e-05
Identity = 34/96 (35.42%), Postives = 48/96 (50.00%), Query Frame = 0

Query: 23  LSRSEYHNKKFKLVNSNNKVHECAVCGARFMSGQALGGHVRRHRRGDDGG----FEDSGE 82
           ++++E    ++ L     KVHEC +C   F SGQALGGH R H      G         +
Sbjct: 223 MTKTEQVETEYVLGVKEKKVHECPICFRVFTSGQALGGHKRSHGSNIGAGRGLSVSQIVQ 282

Query: 83  MERRRVKKQRSNLLCLDLDLNLPAPEDDKRDRSSVV 115
           +E     KQR       +DLNLPAP ++  D +S+V
Sbjct: 283 IEEEVSVKQRM------IDLNLPAPNEE--DETSLV 310

BLAST of Lag0029752 vs. ExPASy Swiss-Prot
Match: Q42453 (Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.2e-04
Identity = 28/86 (32.56%), Postives = 39/86 (45.35%), Query Frame = 0

Query: 34  KLVNSNN-------------KVHECAVCGARFMSGQALGGHVRRHRRGDDGG-------F 93
           KL+NS+N               H C +CG +F  GQALGGH+RRHR     G        
Sbjct: 64  KLINSDNPSLLGSLSNKKTKTSHPCPICGVKFPMGQALGGHMRRHRNEKVSGSLVTRSFL 123

Query: 94  EDSGEMERRRVKKQRSNLLCLDLDLN 100
            ++  +   +       + CLDLDL+
Sbjct: 124 PETTTVTALKKFSSGKRVACLDLDLD 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038885865.11.0e-3669.75zinc finger protein ZAT5-like [Benincasa hispida][more]
XP_011650172.25.9e-3260.77zinc finger protein ZAT5 [Cucumis sativus] >KAE8652011.1 hypothetical protein Cs... [more]
TYJ99965.17.7e-3259.69zinc finger protein ZAT5-like [Cucumis melo var. makuwa][more]
XP_008456545.17.7e-3259.69PREDICTED: zinc finger protein ZAT5-like [Cucumis melo][more]
XP_022939503.12.9e-2353.78zinc finger protein ZAT5-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q681X41.4e-1538.13Zinc finger protein ZAT5 OS=Arabidopsis thaliana OX=3702 GN=ZAT5 PE=2 SV=1[more]
Q390923.4e-0638.04Zinc finger protein ZAT1 OS=Arabidopsis thaliana OX=3702 GN=ZAT1 PE=2 SV=1[more]
Q9M2021.3e-0539.56Zinc finger protein ZAT9 OS=Arabidopsis thaliana OX=3702 GN=ZAT9 PE=2 SV=1[more]
Q9SHD06.4e-0535.42Zinc finger protein ZAT4 OS=Arabidopsis thaliana OX=3702 GN=ZAT4 PE=2 SV=1[more]
Q424539.2e-0432.56Zinc finger protein ZAT7 OS=Arabidopsis thaliana OX=3702 GN=ZAT7 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 22..95
e-value: 1.9E-6
score: 29.6
NoneNo IPR availablePFAMPF13912zf-C2H2_6coord: 42..67
e-value: 4.1E-10
score: 39.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..81
NoneNo IPR availablePANTHERPTHR26374:SF392C2H2-TYPE ZINC FINGER PROTEINcoord: 8..109
NoneNo IPR availablePANTHERPTHR26374ZINC FINGER PROTEIN ZAT5coord: 8..109
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 45..65
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 43..70
score: 9.016026
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 39..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029752.1Lag0029752.1mRNA