Lag0029748 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029748
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	NAC domain-containing protein 78-like isoform X2
Location	chr8: 41772524 .. 41773277 (-)
RNA-Seq Expression	Lag0029748
Synteny	Lag0029748

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAACAGAAAGCAATTGGAAAGGTAGGAAATGAGTTCATGGCCACCAAACAAGCCTCCTGTGCTTCCATCAATGATGCATCCAGTTCAAAGCAAAATCCCAAAGCTATTGACACAGGTTCAGGTAGAATTCTCAACATAAAAATTTAAACATTAATAGTTAGAATCAAGATGGTAGATACTTTTTTCATGATATCTTATACTCATAAAGGAGGCCTTGTTGTTCCAGATTCAAAATCACCATTCCTCAAACGTGTCAGTCACCTGTTGGGCGACATCCCTGCACCTCCTGCATTTGCTTCTGAGTATCCATCAAAGGACATGGCCATTCGGCTCAACTCAACAGCTGAAACTTCCAGTTCAGTTCATATGACTGCTGGAATGATCCATATAAGAAACTTGACATCAAATGGCGATCTGGTGAGTTCCTTATATGGAAAGAATGCGGATGTCAACCTCATCCTTTCTCTTGCTCGACATCAACATCAAGGTGAAAGTGATGAAATGATCCCCCGGTTGTCAATATTTGGTGCACAATCTCAGAAGAATGGGATTATGATTGGGTCACGAGGCGGTTTCTTGTTCTTCTTTCTGCTGTCCTGGATCCTGATACTTTCAGTGAGCTATAAAGTTGGGAGTTGTATCTATTCCCATTGATGCAGAATCAACTATAGCTGTGGCAATCAATAAGGCTTTGTTGGCTGCAAATCTCCCTCTCAAGCAGTCAAGAACAGCGATCTTGCATATCTGA

mRNA sequence

ATGTCTGAACAGAAAGCAATTGGAAAGGTAGGAAATGAGTTCATGGCCACCAAACAAGCCTCCTGTGCTTCCATCAATGATGCATCCAGTTCAAAGCAAAATCCCAAAGCTATTGACACAGGAGGCCTTGTTGTTCCAGATTCAAAATCACCATTCCTCAAACGTGTCAGTCACCTGTTGGGCGACATCCCTGCACCTCCTGCATTTGCTTCTGAGTATCCATCAAAGGACATGGCCATTCGGCTCAACTCAACAGCTGAAACTTCCAGTTCAGTTCATATGACTGCTGGAATGATCCATATAAGAAACTTGACATCAAATGGCGATCTGGTGAGTTCCTTATATGGAAAGAATGCGGATGTCAACCTCATCCTTTCTCTTGCTCGACATCAACATCAAGGTGAAAGTGATGAAATGATCCCCCGGTTGTCAATATTTGGTGCACAATCTCAGAAGAATGGGATTATGATTGGGTCACGAGGCGAATCAACTATAGCTGTGGCAATCAATAAGGCTTTGTTGGCTGCAAATCTCCCTCTCAAGCAGTCAAGAACAGCGATCTTGCATATCTGA

Coding sequence (CDS)

ATGTCTGAACAGAAAGCAATTGGAAAGGTAGGAAATGAGTTCATGGCCACCAAACAAGCCTCCTGTGCTTCCATCAATGATGCATCCAGTTCAAAGCAAAATCCCAAAGCTATTGACACAGGAGGCCTTGTTGTTCCAGATTCAAAATCACCATTCCTCAAACGTGTCAGTCACCTGTTGGGCGACATCCCTGCACCTCCTGCATTTGCTTCTGAGTATCCATCAAAGGACATGGCCATTCGGCTCAACTCAACAGCTGAAACTTCCAGTTCAGTTCATATGACTGCTGGAATGATCCATATAAGAAACTTGACATCAAATGGCGATCTGGTGAGTTCCTTATATGGAAAGAATGCGGATGTCAACCTCATCCTTTCTCTTGCTCGACATCAACATCAAGGTGAAAGTGATGAAATGATCCCCCGGTTGTCAATATTTGGTGCACAATCTCAGAAGAATGGGATTATGATTGGGTCACGAGGCGAATCAACTATAGCTGTGGCAATCAATAAGGCTTTGTTGGCTGCAAATCTCCCTCTCAAGCAGTCAAGAACAGCGATCTTGCATATCTGA

Protein sequence

MSEQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLLGDIPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSSLYGKNADVNLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRGESTIAVAINKALLAANLPLKQSRTAILHI

Homology

[Close]

BLAST of Lag0029748 vs. NCBI nr
Match: KAG6578791.1 (NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.7 bits (548), Expect = 3.5e-52
Identity = 125/193 (64.77%), Postives = 146/193 (75.65%), Query Frame = 0


Query: 1   MSEQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLL 60
           +S Q    +V  EFMATKQAS AS+NDAS+SK NP+AI+T      DSKSPFLKR S++L
Sbjct: 360 ISGQAIPEEVEKEFMATKQASVASVNDASTSKPNPEAIET------DSKSPFLKRASYML 419

Query: 61  GDIPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSSLYGKNAD 120
           G+IPAPPAFASEYPSKDM IRLNS A+TSS  H+TA MI +RN T +G+L SSLYGKNAD
Sbjct: 420 GNIPAPPAFASEYPSKDMVIRLNSLAQTSSPAHVTAQMIRVRNSTPSGELSSSLYGKNAD 479

Query: 121 VNLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRG----ESTIAVAINKALLAA 180
           V+LILS ARH+HQGE D+++ +L IFGAQSQKNG M GSRG         V I   LLAA
Sbjct: 480 VDLILSFARHRHQGERDDIVTQLPIFGAQSQKNGNM-GSRGFLFFFLLFWVLILSVLLAA 539

Query: 181 NLPLKQSRTAILH 190
            LP+KQ RT ILH
Sbjct: 540 YLPIKQLRTEILH 545

[Close]

BLAST of Lag0029748 vs. NCBI nr
Match: XP_038886500.1 (NAC domain-containing protein 78-like isoform X2 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-52
Identity = 118/161 (73.29%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 3   EQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLLGD 62
           E+K  G    EFMATKQ+S ASINDAS+SKQNP AI+TG     DSKSPF KR S++LG+
Sbjct: 384 EEKVNGVAEEEFMATKQSSMASINDASTSKQNPAAIETGS----DSKSPFFKRASYMLGN 443

Query: 63  IPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSSLYGKNADV- 122
           IPAPPAFASEYPSKDMAIRLNS A+TSSSVH+TAGMIHIRNLTS+GDL ++LYGKNADV 
Sbjct: 444 IPAPPAFASEYPSKDMAIRLNSAAQTSSSVHVTAGMIHIRNLTSSGDLGNTLYGKNADVN 503

Query: 123 -NLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRG 162
            NLILSLA  +HQGESD+MI +L +FGAQS+KNG M G RG
Sbjct: 504 LNLILSLAPRRHQGESDDMISQLPLFGAQSEKNGTM-GPRG 539

[Close]

BLAST of Lag0029748 vs. NCBI nr
Match: XP_038886499.1 (NAC domain-containing protein 78-like isoform X1 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 4.5e-52
Identity = 118/161 (73.29%), Postives = 135/161 (83.85%), Query Frame = 0


Query: 3   EQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLLGD 62
           E+K  G    EFMATKQ+S ASINDAS+SKQNP AI+TG     DSKSPF KR S++LG+
Sbjct: 385 EEKVNGVAEEEFMATKQSSMASINDASTSKQNPAAIETGS----DSKSPFFKRASYMLGN 444

Query: 63  IPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSSLYGKNADV- 122
           IPAPPAFASEYPSKDMAIRLNS A+TSSSVH+TAGMIHIRNLTS+GDL ++LYGKNADV 
Sbjct: 445 IPAPPAFASEYPSKDMAIRLNSAAQTSSSVHVTAGMIHIRNLTSSGDLGNTLYGKNADVN 504

Query: 123 -NLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRG 162
            NLILSLA  +HQGESD+MI +L +FGAQS+KNG M G RG
Sbjct: 505 LNLILSLAPRRHQGESDDMISQLPLFGAQSEKNGTM-GPRG 540

[Close]

BLAST of Lag0029748 vs. NCBI nr
Match: XP_016901996.1 (PREDICTED: NAC domain-containing protein 78-like isoform X1 [Cucumis melo] >XP_016901997.1 PREDICTED: NAC domain-containing protein 78-like isoform X1 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 112/162 (69.14%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MSEQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLL 60
           +SE+K       EFMA KQ+S   +NDAS+SKQNPKAI+TG     DSKSPF KR S++L
Sbjct: 383 ISEEKVNEVAEKEFMAAKQSSVTFLNDASTSKQNPKAIETGS----DSKSPFFKRASYML 442

Query: 61  GDIPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSS-LYGKNA 120
           G+IPAPPAFASEYPSKDMAIRLNS A+TSSSVH+TAGMIHIRNLTSNGDLV++ LYGKNA
Sbjct: 443 GNIPAPPAFASEYPSKDMAIRLNSAAQTSSSVHVTAGMIHIRNLTSNGDLVNNPLYGKNA 502

Query: 121 DVNLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRG 162
           DVNLILS A+HQHQ ESD           QS+KNGI++GSRG
Sbjct: 503 DVNLILSFAQHQHQVESDH----------QSEKNGIIVGSRG 530

[Close]

BLAST of Lag0029748 vs. NCBI nr
Match: XP_016901998.1 (PREDICTED: NAC domain-containing protein 78-like isoform X2 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.3e-48
Identity = 112/162 (69.14%), Postives = 129/162 (79.63%), Query Frame = 0


Query: 1   MSEQKAIGKVGNEFMATKQASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLL 60
           +SE+K       EFMA KQ+S   +NDAS+SKQNPKAI+TG     DSKSPF KR S++L
Sbjct: 382 ISEEKVNEVAEKEFMAAKQSSVTFLNDASTSKQNPKAIETGS----DSKSPFFKRASYML 441

Query: 61  GDIPAPPAFASEYPSKDMAIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSS-LYGKNA 120
           G+IPAPPAFASEYPSKDMAIRLNS A+TSSSVH+TAGMIHIRNLTSNGDLV++ LYGKNA
Sbjct: 442 GNIPAPPAFASEYPSKDMAIRLNSAAQTSSSVHVTAGMIHIRNLTSNGDLVNNPLYGKNA 501

Query: 121 DVNLILSLARHQHQGESDEMIPRLSIFGAQSQKNGIMIGSRG 162
           DVNLILS A+HQHQ ESD           QS+KNGI++GSRG
Sbjct: 502 DVNLILSFAQHQHQVESDH----------QSEKNGIIVGSRG 529

[Close]

BLAST of Lag0029748 vs. ExPASy Swiss-Prot
Match: Q949N0 (NAC domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=NAC053 PE=2 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 4.3e-13
Identity = 52/109 (47.71%), Postives = 71/109 (65.14%), Query Frame = 0


Query: 19  QASCASINDASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLLGDIPAPPAFASEYPSKDM 78
           +ASC+   DA +++             PD K P LK+ SH+LG IPAP A ASE+P+KD 
Sbjct: 414 EASCSKQVDADATE-----------FEPDYKYPLLKKASHMLGAIPAPLANASEFPTKDA 473

Query: 79  AIRLNSTAETSSSVHMTAGMIHIRNLTSNGDLVSSLYGKNADVNLILSL 128
           AIRL++ A++S SVH+TAGMI I +  SN   +   YGKN +++LILSL
Sbjct: 474 AIRLHA-AQSSGSVHVTAGMITISD--SN---MGWSYGKNENLDLILSL 505

[Close]

BLAST of Lag0029748 vs. ExPASy Swiss-Prot
Match: Q84K00 (NAC domain-containing protein 78 OS=Arabidopsis thaliana OX=3702 GN=NAC078 PE=2 SV=2)

HSP 1 Score: 70.5 bits (171), Expect = 2.4e-11
Identity = 45/101 (44.55%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 27  DASSSKQNPKAIDTGGLVVPDSKSPFLKRVSHLLGDIPAPPAFASEYPSKDMAIRLNSTA 86
           + SSSKQ+    D         K PFLK+ SH+LG IP P +FAS++ +KD A+RL++ A
Sbjct: 424 EGSSSKQDTDFKDFDSA----PKYPFLKKTSHMLGAIPTPSSFASQFQTKD-AMRLHA-A 483

Query: 87  ETSSSVHMTAGMIHIRNLTSNGDL-VSSLYGKNADVNLILS 127
           ++S SVH+TAGM+ I N+T   D  +   Y KN ++N++LS
Sbjct: 484 QSSGSVHVTAGMMRISNMTLAADSGMGWSYDKNGNLNVVLS 518

The following BLAST results are available for this feature:

BLAST of Lag0029748 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578791.1	3.5e-52	64.77	NAC domain-containing protein 78, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_038886500.1	4.5e-52	73.29	NAC domain-containing protein 78-like isoform X2 [Benincasa hispida]	[more]
XP_038886499.1	4.5e-52	73.29	NAC domain-containing protein 78-like isoform X1 [Benincasa hispida]	[more]
XP_016901996.1	2.3e-48	69.14	PREDICTED: NAC domain-containing protein 78-like isoform X1 [Cucumis melo] >XP_0...	[more]
XP_016901998.1	2.3e-48	69.14	PREDICTED: NAC domain-containing protein 78-like isoform X2 [Cucumis melo]	[more]

BLAST of Lag0029748 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q949N0	4.3e-13	47.71	NAC domain-containing protein 53 OS=Arabidopsis thaliana OX=3702 GN=NAC053 PE=2 ...	[more]
Q84K00	2.4e-11	44.55	NAC domain-containing protein 78 OS=Arabidopsis thaliana OX=3702 GN=NAC078 PE=2 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31989:SF249	NAC DOMAIN-CONTAINING PROTEIN 53-LIKE	coord: 2..146
None	No IPR available	PANTHER	PTHR31989	NAC DOMAIN-CONTAINING PROTEIN 82-RELATED	coord: 2..146

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029748.1	Lag0029748.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding