Lag0029733 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029733
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cyclin-dependent protein kinase inhibitor SMR1-like
Location	chr8: 41667769 .. 41668140 (+)
RNA-Seq Expression	Lag0029733
Synteny	Lag0029733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTTCCTTTACAGGTCCGATCGCCCCCCAACCCTTCCAATTCCGACAACATCCCTTCCTCCGCCGCCTCCGATCACGACGCCTCCTCCCGCGGCGGCTGCCGGACCCCCACCTCCGCCGAGCATAAGATTCCCAAGATCCTCAGCTGCCCTGGAGCCCCGAGGAAGCCCAAGCGCCCGCCCGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTGCCTCCACGGCGCCGCCCAAGCGGAGCTGCTGCCGGTCGGCCTGA

mRNA sequence

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTTCCTTTACAGGTCCGATCGCCCCCCAACCCTTCCAATTCCGACAACATCCCTTCCTCCGCCGCCTCCGATCACGACGCCTCCTCCCGCGGCGGCTGCCGGACCCCCACCTCCGCCGAGCATAAGATTCCCAAGATCCTCAGCTGCCCTGGAGCCCCGAGGAAGCCCAAGCGCCCGCCCGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTGCCTCCACGGCGCCGCCCAAGCGGAGCTGCTGCCGGTCGGCCTGA

Coding sequence (CDS)

ATGTCCATGGACCTTGAATTCCCCAAAAATCTCCCCAAAATCCGCCTTCCTTTACAGGTCCGATCGCCCCCCAACCCTTCCAATTCCGACAACATCCCTTCCTCCGCCGCCTCCGATCACGACGCCTCCTCCCGCGGCGGCTGCCGGACCCCCACCTCCGCCGAGCATAAGATTCCCAAGATCCTCAGCTGCCCTGGAGCCCCGAGGAAGCCCAAGCGCCCGCCCGTCCCTTGCAAGAGGAAGTTGACCATGGAGCTCAAATTCTTCGAGATCGTCAATCAAGAAGAGGTCGATAATTTCTTCCGATCCGCTTACGATCTCGAAGCTGCCTCCACGGCGCCGCCCAAGCGGAGCTGCTGCCGGTCGGCCTGA

Protein sequence

MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDASSRGGCRTPTSAEHKIPKILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRSCCRSA

Homology

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BLAST of Lag0029733 vs. NCBI nr
Match: XP_023521119.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.5 bits (545), Expect = 5.0e-52
Identity = 110/125 (88.00%), Postives = 114/125 (91.20%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDAS--SRGGCRTPTSAEHKI 60
           MSMDLEFP+NLPKIRLPLQVRSPP PSNS NIPSS  SDHD +     GCRTPTSAEHKI
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSS-VSDHDGADLDHRGCRTPTSAEHKI 60

Query: 61  PKILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRS 120
           PKI+SCPGAPRKPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEA+STAPPKRS
Sbjct: 61  PKIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPPKRS 120

Query: 121 CCRSA 124
           CCRSA
Sbjct: 121 CCRSA 124

[Close]

BLAST of Lag0029733 vs. NCBI nr
Match: XP_038884240.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida])

HSP 1 Score: 213.8 bits (543), Expect = 8.5e-52
Identity = 107/122 (87.70%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDASSRGGCRTPTSAEHKIPK 60
           MSMDLEFPKNLPKIRLPLQVRSPP PS SDNIPSSA+       R  CRTPTSAEHKIPK
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIPSSASDRDSDLDRRSCRTPTSAEHKIPK 60

Query: 61  ILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRSCC 120
           ILSCPGAP+KPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEA+STAPPKR+CC
Sbjct: 61  ILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEASSTAPPKRTCC 120

Query: 121 RS 123
           RS
Sbjct: 121 RS 122

[Close]

BLAST of Lag0029733 vs. NCBI nr
Match: XP_022990487.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima])

HSP 1 Score: 212.6 bits (540), Expect = 1.9e-51
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDAS--SRGGCRTPTSAEHKI 60
           MSMDLEFP+NLPKIRLPLQVRSPP PSNS NIPSS  SDHD +     GCRTPTSAEHKI
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSS-VSDHDGADLDHRGCRTPTSAEHKI 60

Query: 61  PKILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRS 120
           PKI+SCPGAPRKPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEA+S APPKRS
Sbjct: 61  PKIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSAAPPKRS 120

Query: 121 CCRSA 124
           CCRSA
Sbjct: 121 CCRSA 124

[Close]

BLAST of Lag0029733 vs. NCBI nr
Match: XP_022923009.1 (cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG6602281.1 hypothetical protein SDJN03_07514, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032961.1 hypothetical protein SDJN02_07012, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.5 bits (537), Expect = 4.2e-51
Identity = 109/125 (87.20%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDAS--SRGGCRTPTSAEHKI 60
           MSMDLEFP+NLPKIRLPLQVRSPP PSNS NIPSS  SDHD +     GCRTPTSAEHKI
Sbjct: 1   MSMDLEFPENLPKIRLPLQVRSPPKPSNSINIPSS-VSDHDGADLDHRGCRTPTSAEHKI 60

Query: 61  PKILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRS 120
           PKI+SCPGAPRKPKRPPVPCKRKLTMELKFFE VNQEEVDNFFRSAYDLEA+STAP KRS
Sbjct: 61  PKIISCPGAPRKPKRPPVPCKRKLTMELKFFEFVNQEEVDNFFRSAYDLEASSTAPSKRS 120

Query: 121 CCRSA 124
           CCRSA
Sbjct: 121 CCRSA 124

[Close]

BLAST of Lag0029733 vs. NCBI nr
Match: XP_008456553.1 (PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >KAA0057132.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa] >TYJ97113.1 cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo var. makuwa])

HSP 1 Score: 206.5 bits (524), Expect = 1.4e-49
Identity = 106/122 (86.89%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MSMDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDAS-SRGGCRTPTSAEHKIP 60
           MSMDLEFPKNLPKIRLPLQVRSPP PS SDNI  S  SDHD+   R  CRTPTSAEHKIP
Sbjct: 1   MSMDLEFPKNLPKIRLPLQVRSPPKPSLSDNIIPS--SDHDSDLDRRSCRTPTSAEHKIP 60

Query: 61  KILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLEAASTAPPKRSC 120
           KILSCPGAP+KPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLE++STAPPKR+C
Sbjct: 61  KILSCPGAPKKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFFRSAYDLESSSTAPPKRNC 120

Query: 121 CR 122
           CR
Sbjct: 121 CR 120

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BLAST of Lag0029733 vs. ExPASy Swiss-Prot
Match: Q9LZ78 (Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN=SIM PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 4.2e-09
Identity = 42/120 (35.00%), Postives = 62/120 (51.67%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRLPLQVRSPPNPSNSDNIPSSAASDHDASSRGGCRTPTSAEHKIPKIL 62
           MDL+  ++LP +  P  ++   N +  D+              GGC TPTS++HKIP   
Sbjct: 1   MDLDLIQDLPILNFPPAIKIRANTNRDDD-------------GGGCTTPTSSDHKIPPTT 60

Query: 63  SC--PGAPRKPKRPPVP-------CKRKLTMELKFFE-IVNQEEVDNFFRSAYDLEAAST 113
           +   P  P+KP+ P  P       CKRKL   L  +E IVN++E++ FF S Y+   AS+
Sbjct: 61  ATTPPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNKDEIERFFSSVYNQTMASS 107

[Close]

BLAST of Lag0029733 vs. ExPASy Swiss-Prot
Match: Q9LPP4 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 GN=SMR1 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-08
Identity = 51/133 (38.35%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 3   MDLEFPKNLPKIRL--PLQVRSPPNPSNSDNIPSSAASDHDASSRGGCRTPTSAEHKIPK 62
           MDLE  ++L K     P+++RS  + +  D        D +   R  C TPTS EHKIP 
Sbjct: 1   MDLELLQDLSKFNFPTPIKIRSKTSKTKKDE-----GDDDEDDLR--CSTPTSQEHKIPA 60

Query: 63  IL-SCPGAPRKPKRPPV-----------PCKRKL---TMELKFFEIVNQEEVDNFFRSAY 119
           ++ S P  PRKP+ PP             CKRKL   T E+    I+N+EE+D FF S Y
Sbjct: 61  VVDSPPPPPRKPRPPPSAPSATAALMIRSCKRKLLVSTCEI----IMNREEIDRFFSSVY 120

[Close]

BLAST of Lag0029733 vs. ExPASy Swiss-Prot
Match: Q9AV28 (Cyclin-dependent protein kinase inhibitor SMR1 OS=Oryza sativa subsp. japonica OX=39947 GN=SMR1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-04
Identity = 24/59 (40.68%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 43  SSRGGCRTPTSAEHKIPKILSCPGAPRKPKRPPVPCKRKLTMELKFFEIVNQEEVDNFF 102
           SS G CRTPT  E  +    +CP APRKP+ P  PC+++L  E++   +   EE++  F
Sbjct: 41  SSGGCCRTPTGGESNLKAPGTCPPAPRKPRAPAAPCRKRL-FEVEVLSL-RLEELERLF 97

[Close]

BLAST of Lag0029733 vs. ExPASy Swiss-Prot
Match: Q9LZ60 (Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 GN=SMR3 PE=1 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.0e-04
Identity = 34/83 (40.96%), Postives = 44/83 (53.01%), Query Frame = 0


Query: 19 QVRSPPNPSNSDNIPSSAASDHDASSRGGCRTPTSAEHKIP--KILSCPGAPRKPK-RPP 78
          ++R P  P    +IP S   D   +   GC+TPTS++HKIP  K   CP APRKPK    
Sbjct: 17 KIRLPTRPEL--DIPDSDHEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKPNRS 76

Query: 79 VPCKRKLTMELKFFEIVNQEEVD 99
             KRKLT       +VN+  +D
Sbjct: 77 SGTKRKLTP----VNVVNRIPID 93

The following BLAST results are available for this feature:

BLAST of Lag0029733 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023521119.1	5.0e-52	88.00	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038884240.1	8.5e-52	87.70	cyclin-dependent protein kinase inhibitor SMR1-like [Benincasa hispida]	[more]
XP_022990487.1	1.9e-51	87.20	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita maxima]	[more]
XP_022923009.1	4.2e-51	87.20	cyclin-dependent protein kinase inhibitor SMR1-like [Cucurbita moschata] >KAG660...	[more]
XP_008456553.1	1.4e-49	86.89	PREDICTED: cyclin-dependent protein kinase inhibitor SMR1-like [Cucumis melo] >K...	[more]

BLAST of Lag0029733 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ78	4.2e-09	35.00	Cyclin-dependent protein kinase inhibitor SIM OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9LPP4	2.7e-08	38.35	Cyclin-dependent protein kinase inhibitor SMR1 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9AV28	9.0e-04	40.68	Cyclin-dependent protein kinase inhibitor SMR1 OS=Oryza sativa subsp. japonica O...	[more]
Q9LZ60	9.0e-04	40.96	Cyclin-dependent protein kinase inhibitor SMR3 OS=Arabidopsis thaliana OX=3702 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..50
None	No IPR available	PANTHER	PTHR33142:SF55	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR14	coord: 3..108
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 3..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029733.1	Lag0029733.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045839	negative regulation of mitotic nuclear division
biological_process	GO:0032875	regulation of DNA endoreduplication
cellular_component	GO:0005634	nucleus