Lag0029715 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029715
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 41426168 .. 41427489 (-)
RNA-Seq Expression	Lag0029715
Synteny	Lag0029715

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGAGTCCCCAAAAGTTATTGGGATGAACGACGACGAGACCCCGAAATCCCCTTTCACTTGGTTCTCTTTCCTTCCCAAGTTCGACTTCCGATTGCCTCTTCCGATCAACGACGGCAAGAAACCGCCGGCTGCGGCGGTTGATGAAGGCCGGAAGGTTGGCGACGACTCGCAGAAGCCCGAGTTTGTCAGGTTTCCTAAAGCAGAGTTGGCCGTCTCTTCGGTGGAGGCTGAAGTCGATGTCTCCGGCAAGACTTCCAATCCGGCGGTTATCTGGCAGGTTTGTGTTCTATTTCGTTTTTGTGGAAAGTGGATGAATTAGAACTTGATACTGTGGTTTGAAACTCGTTGTGTTTGTGGATTTGACTGAACTGGGAATGATTGTTGACTGTTAAAACATCTCGTTAGGTGCTTGTACTTTCAGCTTTCGGCTGCCTAGTTTTTCCCTTTTTTTTAATCTATTCTTGATTGGTTTAGTCGATACGTTCTTAAGATGTTCGGAAACGTGTAAGGATTTCTCCCATGTACATTGTACATAGCAAATAGAAAACTAAACCTCAGCAGTCATCAGGTTGAGTTTTACCAAAAAAGTGCAATACAGAAACTCAATTTTGAAAGCTTTTGGGAATTTCCAATTTTCATCGGGATAGATAGAACAGAAAGGAACCTGGATGCCTGATGCAATATGGATTTTTTTTTCTTCCAATTGCATTAGTATTTCAGTGTCCCACCCAGCTGCTATCATCAGGTTATCAATACTAGTTCCGTGGTGTTCTATCTCCTCAGATTGAATTGGGTCATTTTATTTCTAATCATTGAGAACTTGAAAGCTAGTCTTAGAAAGTTTTCGAAAATGAAGGGTTGATTAAGTATCTCTAGGGAGCAAAAGAGAGAAGAAAATGAGAAGAAGGCTCTGCTTATAATCTGTAGGGGTGAGGTAAGCCTACTGTACTCAAAGAATGCATCCATTTAAAAGTATGGAAGGACTGGGGCCAGGGGCACTTAACTTTTAGTACAAACGTAAACTGAGGGATTGTAAAGGTATCACTATCAGGGGTTGTTCATAAAGGAGAGGATCCCATTATTGTCAGCATCCTACTTTCATATTGATTCTTTTACTTGTTTTTATCCTCTTGCCTTGCTGACTTCGTTGGAACTTGAGCTTTTCTGGTTCCTTGCTTATAACATGAATCATTTCGTTTGCATTAGGTATATGCTCTTGGAGGGTTTTTTATTTTGAGTTGGGCATGGGCAAGATGGAAGGAGAGAAGGCCCCAAAGACGTCCAGATGATGAGGATGAGGATTCCAGGGACACATAG

mRNA sequence

ATGTCAGAGTCCCCAAAAGTTATTGGGATGAACGACGACGAGACCCCGAAATCCCCTTTCACTTGGTTCTCTTTCCTTCCCAAGTTCGACTTCCGATTGCCTCTTCCGATCAACGACGGCAAGAAACCGCCGGCTGCGGCGGTTGATGAAGGCCGGAAGGTTGGCGACGACTCGCAGAAGCCCGAGTTTGTCAGGTTTCCTAAAGCAGAGTTGGCCGTCTCTTCGGTGGAGGCTGAAGTCGATGTCTCCGGCAAGACTTCCAATCCGGCGGTTATCTGGCAGGTATATGCTCTTGGAGGGTTTTTTATTTTGAGTTGGGCATGGGCAAGATGGAAGGAGAGAAGGCCCCAAAGACGTCCAGATGATGAGGATGAGGATTCCAGGGACACATAG

Coding sequence (CDS)

ATGTCAGAGTCCCCAAAAGTTATTGGGATGAACGACGACGAGACCCCGAAATCCCCTTTCACTTGGTTCTCTTTCCTTCCCAAGTTCGACTTCCGATTGCCTCTTCCGATCAACGACGGCAAGAAACCGCCGGCTGCGGCGGTTGATGAAGGCCGGAAGGTTGGCGACGACTCGCAGAAGCCCGAGTTTGTCAGGTTTCCTAAAGCAGAGTTGGCCGTCTCTTCGGTGGAGGCTGAAGTCGATGTCTCCGGCAAGACTTCCAATCCGGCGGTTATCTGGCAGGTATATGCTCTTGGAGGGTTTTTTATTTTGAGTTGGGCATGGGCAAGATGGAAGGAGAGAAGGCCCCAAAGACGTCCAGATGATGAGGATGAGGATTCCAGGGACACATAG

Protein sequence

MSESPKVIGMNDDETPKSPFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDDSQKPEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQRRPDDEDEDSRDT

Homology

[Close]

BLAST of Lag0029715 vs. NCBI nr
Match: XP_023550789.1 (uncharacterized protein LOC111808822 isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MSESPKVIGMNDDETPKSPFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDDSQK 60
           MSE+PKVIGM +DE+PK PFTWFSFLPKFD RLPLPIN GKKPPA  +DEG K  DD+QK
Sbjct: 42  MSETPKVIGMKEDESPKFPFTWFSFLPKFDLRLPLPINGGKKPPATVMDEGPKDDDDAQK 101

Query: 61  PEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQRRP 120
           PEFVRFPKA LAV SVE E DVSGKTSNPAVIWQVYALGGF ILSWAWARWKERRP+RR 
Sbjct: 102 PEFVRFPKANLAVPSVEVEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERRPKRRS 161

Query: 121 DDED--EDSRDT 131
           DD+D  EDSRDT
Sbjct: 162 DDDDENEDSRDT 173

[Close]

BLAST of Lag0029715 vs. NCBI nr
Match: XP_023550786.1 (uncharacterized protein LOC111808822 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 223.4 bits (568), Expect = 1.1e-54
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MSESPKVIGMNDDETPKSPFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDDSQK 60
           MSE+PKVIGM +DE+PK PFTWFSFLPKFD RLPLPIN GKKPPA  +DEG K  DD+QK
Sbjct: 74  MSETPKVIGMKEDESPKFPFTWFSFLPKFDLRLPLPINGGKKPPATVMDEGPKDDDDAQK 133

Query: 61  PEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQRRP 120
           PEFVRFPKA LAV SVE E DVSGKTSNPAVIWQVYALGGF ILSWAWARWKERRP+RR 
Sbjct: 134 PEFVRFPKANLAVPSVEVEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERRPKRRS 193

Query: 121 DDED--EDSRDT 131
           DD+D  EDSRDT
Sbjct: 194 DDDDENEDSRDT 205

[Close]

BLAST of Lag0029715 vs. NCBI nr
Match: XP_022993210.1 (uncharacterized protein LOC111489298 [Cucurbita maxima] >XP_022993211.1 uncharacterized protein LOC111489298 [Cucurbita maxima])

HSP 1 Score: 219.9 bits (559), Expect = 1.3e-53
Identity = 106/132 (80.30%), Postives = 115/132 (87.12%), Query Frame = 0


Query: 1   MSESPKVIGMNDDETPKSPFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDDSQK 60
           MSESPKVIG+ ++E+PK PFTWFSFLPKFD RLPLPIN GKKPPA  +DEG K  +D+QK
Sbjct: 1   MSESPKVIGIKEEESPKFPFTWFSFLPKFDLRLPLPINGGKKPPATVMDEGPKDDEDAQK 60

Query: 61  PEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQRRP 120
           PEFVRFPKA LAV SVE E DVSGKTSNPAVIWQVYALGGF ILSWAWARWKERRP+RR 
Sbjct: 61  PEFVRFPKANLAVPSVEVEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERRPKRRS 120

Query: 121 DDED--EDSRDT 131
           DD+D  EDSRDT
Sbjct: 121 DDDDENEDSRDT 132

[Close]

BLAST of Lag0029715 vs. NCBI nr
Match: KAG6578783.1 (hypothetical protein SDJN03_23231, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016314.1 hypothetical protein SDJN02_21421 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 6.2e-53
Identity = 106/132 (80.30%), Postives = 113/132 (85.61%), Query Frame = 0


Query: 1   MSESPKVIGMNDDETPKSPFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDDSQK 60
           MSE+PKVIGM +DE+PK PFTWFSFLPKFD RLPLPIN GKKPPA  +DE  K  D +QK
Sbjct: 1   MSENPKVIGMKEDESPKFPFTWFSFLPKFDLRLPLPINGGKKPPATVMDERPKDDDGAQK 60

Query: 61  PEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQRRP 120
           PEFVRFPKA LAV SVE E DVSGKTSNPAVIWQVYALGGF ILSWAWARWKERRP+RR 
Sbjct: 61  PEFVRFPKANLAVPSVEVEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERRPKRRS 120

Query: 121 DDED--EDSRDT 131
           DD+D  EDSRDT
Sbjct: 121 DDDDENEDSRDT 132

[Close]

BLAST of Lag0029715 vs. NCBI nr
Match: XP_038886165.1 (uncharacterized protein LOC120076415 [Benincasa hispida])

HSP 1 Score: 215.3 bits (547), Expect = 3.1e-52
Identity = 104/129 (80.62%), Postives = 113/129 (87.60%), Query Frame = 0


Query: 1   MSESPKVIGMNDDE-TPKS--PFTWFSFLPKFDFRLPLPINDGKKPPAAAVDEGRKVGDD 60
           M+E+PK IGM +DE +PKS  PF WFSFLPKFDFRLP PIN GKKPPA  VDEGRK  DD
Sbjct: 1   MAENPKFIGMKEDEDSPKSPFPFPWFSFLPKFDFRLPFPINGGKKPPAVVVDEGRKADDD 60

Query: 61  SQKPEFVRFPKAELAVSSVEAEVDVSGKTSNPAVIWQVYALGGFFILSWAWARWKERRPQ 120
           +QKPEFVRFPKAEL V+SVEAE DVSGKTSNPAVIWQVYALGGF ILSWAWARWKERRPQ
Sbjct: 61  AQKPEFVRFPKAELPVASVEAEADVSGKTSNPAVIWQVYALGGFLILSWAWARWKERRPQ 120

Query: 121 RRPDDEDED 127
           RR +D++ED
Sbjct: 121 RRSNDDEED 129

The following BLAST results are available for this feature:

BLAST of Lag0029715 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023550789.1	1.1e-54	81.82	uncharacterized protein LOC111808822 isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023550786.1	1.1e-54	81.82	uncharacterized protein LOC111808822 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022993210.1	1.3e-53	80.30	uncharacterized protein LOC111489298 [Cucurbita maxima] >XP_022993211.1 uncharac...	[more]
KAG6578783.1	6.2e-53	80.30	hypothetical protein SDJN03_23231, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038886165.1	3.1e-52	80.62	uncharacterized protein LOC120076415 [Benincasa hispida]	[more]

BLAST of Lag0029715 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..60
None	No IPR available	PANTHER	PTHR36374	OS01G0969000 PROTEIN	coord: 3..128
None	No IPR available	PANTHER	PTHR36374:SF1	OS01G0969000 PROTEIN	coord: 3..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029715.1	Lag0029715.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane