Lag0029703 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029703
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Flowering time control protein FY
Location	chr8: 41288663 .. 41290719 (+)
RNA-Seq Expression	Lag0029703
Synteny	Lag0029703

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTAAGTAAACTCGAAGCTGAGAAATCTGTCAGGCATGAAAATTGTCTTTGAGAAAGGACTAATTATGGAACCTCCGGATGGAATAGCACCTTTTCAACTCTTTCAAAATGGAATTTATTCTGAATATATAAGCATTAAATATCTAAATTTTCTACTTTCTCTTTTAGACCTATTGCGTACTAAGTTGCAGCCAAGAATTTGAATCCATTTTTCATGATTTTATGCACAATGTTGGATATATGAATTCTTCCCAAAATGTGTTCCTCAATGACATCTAATAAGTGAGATTTTTGGTAAACACTTAAACAATCTTGTGCATTTTGTGGATTTTGTTCCATGAAAGAAACATATAAATTGAATGTAATTATTTAGGGTGAACTTGTGGTAATTTCCAAACAGGTGAAGAAATATGTGTTGTATCCTTTTCCTAGAGCAGAATCGAGGAAAAAGTGATTTAGATTTCACTGTCACTTGCTTAGAATGCACCAAGAAGTCACTTAGCAATGGGGATTTCCTTTAAAGGAAATCACAAAGTTCTAAACTTTTCTAATTCTTGATCCCCAGCAGTTCACAAATCATAGCATGCTCATCATTTTCTTATAGATGATTTTTTTTTGTGAATGACTTTATCTGGCTTTCAATTAAGTGACGTATTGAAAGCCCAAGATATGAATTTTTGTAATTACTCTGCTGCCATGATTATCCTTCATTGGAATGCTTTTGTGTAGTTTCTTTTGGAGGAGGGATGCCTTATCCCTCTGTCTTTGGCTGTATTTTGTTGTGGCTTCTGTGAATGAGTTCTTTGCCATGGTAGGTTTTGTTTATTGGAGATGGCTTGTTGTCGGTCCCACTGTGTAACCTGTGCGTCTTAAACATTCATCTTATAACCTTATTGAGACTTTTCGGGTAGTCTAGATCTTTTACCCCAAGCAATCTTTTTGCCAAGACTTGCTTTTTTTTCTTTTTCTTTTTCCAATGATTTGTGAAGTTATGGATGATAGGAAGGATTCAATATCATTAAGTTAAATTATTGAAGAAGTTTGGTTTGTCTTCTGATATCATGGTTAGGGACCTAGGGTTGATTCGGTATGATTTTATTTCATTACGTTTGCTGACATAATTTGTAAACAGCCCTTGAATCTTGTAGTCTAGACTTTAGATATATCATCAAATAAGTTTATTCTACGTTCTATTGATCTAATTGCTCCCTCCCTTGATACACCTCTCTTTTCTCTTCCTGTAGTACCCCTTTCCTCCTTGTGACACAAGGACAAGGGAGAAAGAATAATTTCTAAATAGGTCCAAACTCATTCTCTGAACACTAGCCTTTGTTATTCTCAAGCTAAGGCTATTTTTTAAAGTGGGGTTACTTGCCTCTCGTGGCTTTTGGTTCTCCAGTTCAACCATGTGATTTTTTAATAAGAACAGACAGTACTTAATAATTTGGGATGGAATATCTCTGACTGCTTATGGGTCCTTTTGAATGATGACATGCATAAACTTCTGCCTGTTAAGAACTTTTTGAATGACATTTTTATTTTAACTTCTGCCTTTTCTTTTGAAGGCCTGACGAATTTAACTATGATTATAGGGGATGCAAGGATCTATGAATCAGATGGTTCCTCCCATGCAACAAAACCATTTTATGGGCATGAATCCAATGCACTCAGGACCTATGCCCACTAGTGGTGCTCCACCTTCTGTCCAAGGCTTTCAGAATAGCTTACCAAATATGCAGGGCCCATCAAATGCGTCTGGGGCACCAATGTATCCACAAGGTGGTGCATTCAATCGGACACAGGCTGGACAAATGCCAATGACACCAGGGTTCAATCCGTACCAGGTATGATTATAACAGTTATCATTATCTTCAACATCATCTTTTGGCTATAAGTTTTCCATTATAGAGAAACTGAATTGGGATTGTGTTTAATATTAACCATTGAGGCTGTTAAATCACATGTGTATTCATGTTTATGACACTGCAATTGAAACAAAATCTAGGCTGTATTGATCTACTTCGCCCTGGGGGAGGGGTTTCAAATGGGATAA

mRNA sequence

ATGCTTTTCTTTTGGAGGAGGGATGCCTTATCCCTCTGTCTTTGGCTGTATTTTGTTGTGGCTTCTGTGAATGAGTTCTTTGCCATGGGGATGCAAGGATCTATGAATCAGATGGTTCCTCCCATGCAACAAAACCATTTTATGGGCATGAATCCAATGCACTCAGGACCTATGCCCACTAGTGGTGCTCCACCTTCTGTCCAAGGCTTTCAGAATAGCTTACCAAATATGCAGGGCCCATCAAATGCGTCTGGGGCACCAATGTATCCACAAGGTGGTGCATTCAATCGGACACAGGCTGGACAAATGCCAATGACACCAGGGTTCAATCCGTACCAGGCTGTATTGATCTACTTCGCCCTGGGGGAGGGGTTTCAAATGGGATAA

Coding sequence (CDS)

ATGCTTTTCTTTTGGAGGAGGGATGCCTTATCCCTCTGTCTTTGGCTGTATTTTGTTGTGGCTTCTGTGAATGAGTTCTTTGCCATGGGGATGCAAGGATCTATGAATCAGATGGTTCCTCCCATGCAACAAAACCATTTTATGGGCATGAATCCAATGCACTCAGGACCTATGCCCACTAGTGGTGCTCCACCTTCTGTCCAAGGCTTTCAGAATAGCTTACCAAATATGCAGGGCCCATCAAATGCGTCTGGGGCACCAATGTATCCACAAGGTGGTGCATTCAATCGGACACAGGCTGGACAAATGCCAATGACACCAGGGTTCAATCCGTACCAGGCTGTATTGATCTACTTCGCCCTGGGGGAGGGGTTTCAAATGGGATAA

Protein sequence

MLFFWRRDALSLCLWLYFVVASVNEFFAMGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPMYPQGGAFNRTQAGQMPMTPGFNPYQAVLIYFALGEGFQMG

Homology

[Close]

BLAST of Lag0029703 vs. NCBI nr
Match: KAA0050222.1 (flowering time control protein FY [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 89/100 (89.00%), Postives = 93/100 (93.00%), Query Frame = 0


Query: 29  MGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 88
           MGMQGSMNQMVPPMQQNH+MGMNPMHSGPMPTSGAPPSVQGFQN++PNMQGPSNASGAPM
Sbjct: 280 MGMQGSMNQMVPPMQQNHYMGMNPMHSGPMPTSGAPPSVQGFQNNVPNMQGPSNASGAPM 339

Query: 89  YPQGGAFNRTQAGQMPMTPGFNPYQAVLIYFALGEGFQMG 129
           YPQGG FNR QAGQMPMTPGFNPYQAVL+ F L  G QMG
Sbjct: 340 YPQGGGFNRGQAGQMPMTPGFNPYQAVLVRFPL-MGVQMG 378

[Close]

BLAST of Lag0029703 vs. NCBI nr
Match: KAG7016648.1 (Flowering time control protein FY, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 29  MGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 88
           MGMQGSMNQM PPMQQNHFMGMNPMHSG MPTSGAPPSVQGFQNSLPNMQGPSNASGAPM
Sbjct: 187 MGMQGSMNQMGPPMQQNHFMGMNPMHSGSMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 246

Query: 89  YPQGGAFNRTQAGQMPMTPGFNPYQ 114
           YPQGGAFNRTQAGQMPMTPGFNPYQ
Sbjct: 247 YPQGGAFNRTQAGQMPMTPGFNPYQ 271

[Close]

BLAST of Lag0029703 vs. NCBI nr
Match: XP_022993789.1 (flowering time control protein FY isoform X2 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 29  MGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 88
           MGMQGSMNQM PPMQQNHFMGMNPMHSG MPTSGAPPSVQGFQNSLPNMQGPSNASGAPM
Sbjct: 520 MGMQGSMNQMGPPMQQNHFMGMNPMHSGSMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 579

Query: 89  YPQGGAFNRTQAGQMPMTPGFNPYQ 114
           YPQGGAFNRTQAGQMPMTPGFNPYQ
Sbjct: 580 YPQGGAFNRTQAGQMPMTPGFNPYQ 604

[Close]

BLAST of Lag0029703 vs. NCBI nr
Match: XP_022938944.1 (flowering time control protein FY-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 29  MGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 88
           MGMQGSMNQM PPMQQNHFMGMNPMHSG MPTSGAPPSVQGFQNSLPNMQGPSNASGAPM
Sbjct: 520 MGMQGSMNQMGPPMQQNHFMGMNPMHSGSMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 579

Query: 89  YPQGGAFNRTQAGQMPMTPGFNPYQ 114
           YPQGGAFNRTQAGQMPMTPGFNPYQ
Sbjct: 580 YPQGGAFNRTQAGQMPMTPGFNPYQ 604

[Close]

BLAST of Lag0029703 vs. NCBI nr
Match: XP_023550001.1 (flowering time control protein FY-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023550002.1 flowering time control protein FY-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0


Query: 29  MGMQGSMNQMVPPMQQNHFMGMNPMHSGPMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 88
           MGMQGSMNQM PPMQQNHFMGMNPMHSG MPTSGAPPSVQGFQNSLPNMQGPSNASGAPM
Sbjct: 618 MGMQGSMNQMGPPMQQNHFMGMNPMHSGSMPTSGAPPSVQGFQNSLPNMQGPSNASGAPM 677

Query: 89  YPQGGAFNRTQAGQMPMTPGFNPYQ 114
           YPQGGAFNRTQAGQMPMTPGFNPYQ
Sbjct: 678 YPQGGAFNRTQAGQMPMTPGFNPYQ 702

The following BLAST results are available for this feature:

BLAST of Lag0029703 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050222.1	1.7e-42	89.00	flowering time control protein FY [Cucumis melo var. makuwa]	[more]
KAG7016648.1	1.3e-39	97.65	Flowering time control protein FY, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022993789.1	1.3e-39	97.65	flowering time control protein FY isoform X2 [Cucurbita maxima]	[more]
XP_022938944.1	1.3e-39	97.65	flowering time control protein FY-like isoform X2 [Cucurbita moschata]	[more]
XP_023550001.1	1.3e-39	97.65	flowering time control protein FY-like isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]

BLAST of Lag0029703 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029703.1	Lag0029703.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005847	mRNA cleavage and polyadenylation specificity factor complex
molecular_function	GO:0016746	acyltransferase activity