Lag0029702 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029702
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr8: 41284415 .. 41286695 (+)
RNA-Seq ExpressionLag0029702
SyntenyLag0029702
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGAAGGTAGATAACACAATCAAGAAACTTATTGGTGGAAGTAATATTTTTAAGCTTAATTTTCAAAAACCAAAAACTACGGCTCACACAAAAAAGAGAAGGCAAATTAAGGGCATGTTTGGGAATGATGTTTGCATTATTGATTTTGGCAAACTAAGGGCAGTTCAAAATTTCCACTACTGTTGTGGGTAATTTTGGCTTGGCAGGTACACTAAAGAAGAAGGACTTCGGACCCAGCTGAGATCGGCCCGAGGAGATGAAGGCCCACAAGAGGTGGGATGTCCACCTCGGCCTCGACCCAAAGCCGAGGCCGAGGGTCTGGTCGGCCTTGGCCCAATACCGAGGCCGACCAGGCCAATTAAGCCCACTGGGCACTTGGGTTGCCCGGGTCAATCCCCTTGGGCCCAGTAGCGGGAGGCTACGTGCGGTGGACGACGTAGAAAGGGAAAAACCCTAGCAAGAGAGGTATAAAAGGCTAGAGATGATCCAAAAAAGGGGTAACTGATATCTGAACTCTGAACTCCACTGAACTGCACTTTTCGACTGGGAGACCGGTCGGAGTTTTACCGATCACTGACTTAAGCTTCGGAGCGCGTGTGGCAAGCACCACACCGGTGTGCAGTGCTCACTTTCTTTCTTTGCAGGTCACGTCTTCTCCATATCACAACAAATTCATTGTTGGTGTCACGTGAAGGGCAGGTGAGCGCTTGGCCAGATTTTGGCATCAACAGTTGGCACTTTCTGTGGGGAAGAGGTGTCAAATTGAGAGCATTGCAGGCCGGTGTGACAGGATAATGGAGCAGGAAAATCCAGCGGGTGAGAAAGGTCAACAGTCCAAGGTAAACACTCCGGGCACTGAGATGGAAGACCTTAGAGGTAGGGTAAACGAGATGGGGCAGAGTTTGGCTGAGATTTTGGGTATATTAAAGCAACCGCATCCCGGCACGACGTACAAGAGGAGTTCCGTACGAGACCATGAGAGGAAGAGAGGGGCCTCCGGTGAAGAGGAAGAGGAAACAGATAGTGCCACCAGCAAGTTGCGCCAGCCGAGGGAGGGCGAAAAACTTGTCTTAAGGGAATCAGGGTCGAGCAGAGGGGCAGAGCGCAAAGGCGCACTTGATGTCCCAGATGAGGTAAGCACAGTGGGCTCGCACAGGAAGATCGGGGCCGAGGCCGAGGCCGAGGCCATGGCCAAGGCCAAGATATTGGAAAAAGTCGAGCTCGAGGCAAAGATCCGGGTTGAGCTAGAAGGTAAACTGAGAGCCGAGGCCGAAGCTGCGGCTAAAGCAAAGGTCGAGGCCGAGCAGATCAAGGGTAAGACCAAGGAAGGTACCCAGGGAAGTGCACGCCCTAGGGATGCAGACAGGGATTATTTGGAAAGCCTAATAGGGCAGGCTGACCCGCCCTTTGTCGATGAGATTATGCAAGCCGAGGTTCCACACAAGTTTAAGTTACCAACTTTTCCGCAGTACGATGGGAAAAAAGACACAGTGCAGCATTTGGACACCTACCGATCCTGGATGGGATTTCATGGGGCTTCCGAGGCGACTAAGTGTCGGGCATTCTCGTTAACCCTAACCGGAGCAGCACAGCAATGGTACGGTAAATTGCCACCCAAATCCATTGGATCGTTTAAAGAATTATCCCGCCTCTTTGCCACCCAGTTCTTAGGGGCAAGGGATCGGAAGAAGCCACAGTTCAATTTGTTGACTATCAAGCAAAGGCCAGGGGAGAGCCTGAATGGGTATATCACACGGTTCAGTAACGAGGTTGTGCAGGTAGAAGGGTATGACGACGCAGTGGCACTAACCGCGGTTATCGCCGGGCTACAGGATGAGAGATTGCTGAATTCCGTAGGGGAGGACCAACCAAGGATGTATACTGAGTTCGTTGCCAGGGCACAAAAGTACATAAACGCAGAGGAGTTAATGAAATCCAAACGGGCGGAAAGGGAAGCGCAGAAGGTAACCACCATCGACAAGGGCAGAAGAAAGGAGGAGAGGGGTAAACGGTCGCGGGAAGAGGACGAGGACTGGGGCCGCCTCAGGTATTCTGCTGGTCGGGGCCAACCAGACCAGAAAGAAGGCCGAGGCCGACCAGAGTTCAGGGGAAAGTATGAAAAGTACACTCCCCTCTCTTTCTCGCCCGACCAGGTTCTGGCTGCAGTCAATCATACGGATCTGTTGAAACGCCCGGATAGACTGAAAGGGAACCCTGATAGAAGGGATAGGAGCAAATTTTGCTACTTCCATCGAGATCATGGTCATACGACATGA

mRNA sequence

ATGGGAAGAAGGTACACTAAAGAAGAAGGACTTCGGACCCAGCTGAGATCGGCCCGAGGAGATGAAGGCCCACAAGAGGTGGGATGTCCACCTCGGCCTCGACCCAAAGCCGAGGCCGAGGGTCTGGTCGGCCTTGGCCCAATACCGAGGCCGACCAGGCCAATTAAGCCCACTGGGCACTTGGGTTGCCCGGGTGAGCGCTTGGCCAGATTTTGGCATCAACAGTTGGCACTTTCTGTGGGGAAGAGGTGTCAAATTGAGAGCATTGCAGGCCGGTGTGACAGGATAATGGAGCAGGAAAATCCAGCGGGTGAGAAAGGTCAACAGTCCAAGGTAAACACTCCGGGCACTGAGATGGAAGACCTTAGAGGTAGGGTAAACGAGATGGGGCAGAGTTTGGCTGAGATTTTGGGTATATTAAAGCAACCGCATCCCGGCACGACGTACAAGAGGAGTTCCGTACGAGACCATGAGAGGAAGAGAGGGGCCTCCGGTGAAGAGGAAGAGGAAACAGATAGTGCCACCAGCAAGTTGCGCCAGCCGAGGGAGGGCGAAAAACTTGTCTTAAGGGAATCAGGGTCGAGCAGAGGGGCAGAGCGCAAAGGCGCACTTGATGTCCCAGATGAGGTAAGCACAGTGGGCTCGCACAGGAAGATCGGGGCCGAGGCCGAGGCCGAGGCCATGGCCAAGGCCAAGATATTGGAAAAAGTCGAGCTCGAGGCAAAGATCCGGGTTGAGCTAGAAGGTAAACTGAGAGCCGAGGCCGAAGCTGCGGCTAAAGCAAAGGTCGAGGCCGAGCAGATCAAGGGTAAGACCAAGGAAGGTACCCAGGGAAGTGCACGCCCTAGGGATGCAGACAGGGATTATTTGGAAAGCCTAATAGGGCAGGCTGACCCGCCCTTTGTCGATGAGATTATGCAAGCCGAGGTTCCACACAAGTTTAAGTTACCAACTTTTCCGCAGTACGATGGGAAAAAAGACACAGTGCAGCATTTGGACACCTACCGATCCTGGATGGGATTTCATGGGGCTTCCGAGGCGACTAAGTGTCGGGCATTCTCGTTAACCCTAACCGGAGCAGCACAGCAATGGTACGGTAAATTGCCACCCAAATCCATTGGATCGTTTAAAGAATTATCCCGCCTCTTTGCCACCCAGTTCTTAGGGGCAAGGGATCGGAAGAAGCCACAGTTCAATTTGTTGACTATCAAGCAAAGGCCAGGGGAGAGCCTGAATGGGTATATCACACGGTTCAGTAACGAGGTTGTGCAGGTAGAAGGGTATGACGACGCAGTGGCACTAACCGCGGTTATCGCCGGGCTACAGGATGAGAGATTGCTGAATTCCGTAGGGGAGGACCAACCAAGGATGTATACTGAGTTCGTTGCCAGGGCACAAAAGTACATAAACGCAGAGGAGTTAATGAAATCCAAACGGGCGGAAAGGGAAGCGCAGAAGGTAACCACCATCGACAAGGGCAGAAGAAAGGAGGAGAGGGGTAAACGGTCGCGGGAAGAGGACGAGGACTGGGGCCGCCTCAGGTATTCTGCTGGTCGGGGCCAACCAGACCAGAAAGAAGGCCGAGGCCGACCAGAGTTCAGGGGAAAGTATGAAAAGTACACTCCCCTCTCTTTCTCGCCCGACCAGGTTCTGGCTGCAGTCAATCATACGGATCTGTTGAAACGCCCGGATAGACTGAAAGGGAACCCTGATAGAAGGGATAGGAGCAAATTTTGCTACTTCCATCGAGATCATGGTCATACGACATGA

Coding sequence (CDS)

ATGGGAAGAAGGTACACTAAAGAAGAAGGACTTCGGACCCAGCTGAGATCGGCCCGAGGAGATGAAGGCCCACAAGAGGTGGGATGTCCACCTCGGCCTCGACCCAAAGCCGAGGCCGAGGGTCTGGTCGGCCTTGGCCCAATACCGAGGCCGACCAGGCCAATTAAGCCCACTGGGCACTTGGGTTGCCCGGGTGAGCGCTTGGCCAGATTTTGGCATCAACAGTTGGCACTTTCTGTGGGGAAGAGGTGTCAAATTGAGAGCATTGCAGGCCGGTGTGACAGGATAATGGAGCAGGAAAATCCAGCGGGTGAGAAAGGTCAACAGTCCAAGGTAAACACTCCGGGCACTGAGATGGAAGACCTTAGAGGTAGGGTAAACGAGATGGGGCAGAGTTTGGCTGAGATTTTGGGTATATTAAAGCAACCGCATCCCGGCACGACGTACAAGAGGAGTTCCGTACGAGACCATGAGAGGAAGAGAGGGGCCTCCGGTGAAGAGGAAGAGGAAACAGATAGTGCCACCAGCAAGTTGCGCCAGCCGAGGGAGGGCGAAAAACTTGTCTTAAGGGAATCAGGGTCGAGCAGAGGGGCAGAGCGCAAAGGCGCACTTGATGTCCCAGATGAGGTAAGCACAGTGGGCTCGCACAGGAAGATCGGGGCCGAGGCCGAGGCCGAGGCCATGGCCAAGGCCAAGATATTGGAAAAAGTCGAGCTCGAGGCAAAGATCCGGGTTGAGCTAGAAGGTAAACTGAGAGCCGAGGCCGAAGCTGCGGCTAAAGCAAAGGTCGAGGCCGAGCAGATCAAGGGTAAGACCAAGGAAGGTACCCAGGGAAGTGCACGCCCTAGGGATGCAGACAGGGATTATTTGGAAAGCCTAATAGGGCAGGCTGACCCGCCCTTTGTCGATGAGATTATGCAAGCCGAGGTTCCACACAAGTTTAAGTTACCAACTTTTCCGCAGTACGATGGGAAAAAAGACACAGTGCAGCATTTGGACACCTACCGATCCTGGATGGGATTTCATGGGGCTTCCGAGGCGACTAAGTGTCGGGCATTCTCGTTAACCCTAACCGGAGCAGCACAGCAATGGTACGGTAAATTGCCACCCAAATCCATTGGATCGTTTAAAGAATTATCCCGCCTCTTTGCCACCCAGTTCTTAGGGGCAAGGGATCGGAAGAAGCCACAGTTCAATTTGTTGACTATCAAGCAAAGGCCAGGGGAGAGCCTGAATGGGTATATCACACGGTTCAGTAACGAGGTTGTGCAGGTAGAAGGGTATGACGACGCAGTGGCACTAACCGCGGTTATCGCCGGGCTACAGGATGAGAGATTGCTGAATTCCGTAGGGGAGGACCAACCAAGGATGTATACTGAGTTCGTTGCCAGGGCACAAAAGTACATAAACGCAGAGGAGTTAATGAAATCCAAACGGGCGGAAAGGGAAGCGCAGAAGGTAACCACCATCGACAAGGGCAGAAGAAAGGAGGAGAGGGGTAAACGGTCGCGGGAAGAGGACGAGGACTGGGGCCGCCTCAGGTATTCTGCTGGTCGGGGCCAACCAGACCAGAAAGAAGGCCGAGGCCGACCAGAGTTCAGGGGAAAGTATGAAAAGTACACTCCCCTCTCTTTCTCGCCCGACCAGGTTCTGGCTGCAGTCAATCATACGGATCTGTTGAAACGCCCGGATAGACTGAAAGGGAACCCTGATAGAAGGGATAGGAGCAAATTTTGCTACTTCCATCGAGATCATGGTCATACGACATGA

Protein sequence

MGRRYTKEEGLRTQLRSARGDEGPQEVGCPPRPRPKAEAEGLVGLGPIPRPTRPIKPTGHLGCPGERLARFWHQQLALSVGKRCQIESIAGRCDRIMEQENPAGEKGQQSKVNTPGTEMEDLRGRVNEMGQSLAEILGILKQPHPGTTYKRSSVRDHERKRGASGEEEEETDSATSKLRQPREGEKLVLRESGSSRGAERKGALDVPDEVSTVGSHRKIGAEAEAEAMAKAKILEKVELEAKIRVELEGKLRAEAEAAAKAKVEAEQIKGKTKEGTQGSARPRDADRDYLESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATKCRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGESLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYINAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREEDEDWGRLRYSAGRGQPDQKEGRGRPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHTT
Homology
BLAST of Lag0029702 vs. NCBI nr
Match: XP_024041095.1 (uncharacterized protein LOC112098853 [Citrus clementina])

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-56
Identity = 123/301 (40.86%), Postives = 187/301 (62.13%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L+ +  + +PPF  +IM A+ P +F LP    YDG++D  +HL+ YR+ M   GAS+A  
Sbjct: 166 LDDVTAEHEPPFTSDIMVAKYPPRFHLPQMEPYDGQRDPTEHLELYRTLMEVQGASQAIL 225

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF LTL GAA++W+ +L P SI SF +LSR F + F  AR R KP   LLT+KQ+ GE
Sbjct: 226 CRAFPLTLVGAARRWFRRLQPHSISSFGDLSREFTSHFRSARQRGKPVTYLLTVKQQEGE 285

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  YI R++NE+ QV+GYDD +AL+ ++ GL+  +L  SV +  P  Y+E +ARA+KY 
Sbjct: 286 TLRDYIRRYNNEITQVDGYDDGIALSGIMEGLRMGKLWWSVSKRPPTSYSEMLARAEKYA 345

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREEDEDWGRLRYSAGRGQPDQKEGRG 529
           NAEE  K++  E+     +T  K ++ ++R +R    D+   R ++  G    ++ E R 
Sbjct: 346 NAEERFKNRNQEKGE---STKGKKKKDDQRERRVVRPDQSLRRNQFRPG----ERSEVRD 405

Query: 530 -RPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHT 589
            RP    ++  +T L+   +Q+L  V +  L + P  +K NP RR+ +K+C+FH+DHGH 
Sbjct: 406 TRPRLASQFTNFTELNTPREQILMQVRNPTLFRTPPPMKTNPSRRNPNKYCHFHKDHGHD 459

BLAST of Lag0029702 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-53
Identity = 160/460 (34.78%), Postives = 236/460 (51.30%), Query Frame = 0

Query: 140 LKQPHPGTTYKRSSVRDHERKRGASGEEEEETDSATSK----LRQPREGEKLVLRESGSS 199
           L  P  G     +S  + ER+ G        T     K    L      E  ++R+    
Sbjct: 22  LGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQFAVLEDKESDEVPLVRDPKKG 81

Query: 200 RGAERKGALDVPDEVSTVGSHRKIGAEAEAEAMAKAKILE--KVELEAKIRVELEGKLRA 259
           +G       D  +  ++VGS  +IG         + +I +  K + + K      GK   
Sbjct: 82  KGPTES---DTEESTNSVGSKLRIGGNTR----QRTRIFDPRKTKKQHKSPAPNGGKSDH 141

Query: 260 EAEAAAKAKVEAEQIKGKTKEGTQGS-ARPRDADRDY-LESLIGQADPPFVDEIMQAEVP 319
           +   +    ++    KGK  +  + S  R    ++ + LE L+ QAD PF +EIM+ +VP
Sbjct: 142 DDRNSEPISLD----KGKPADRPESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVP 201

Query: 320 HKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATKCRAFSLTLTGAAQQWYGKLPPK 379
            KFKLPT  Q+D   D V HLD YR WM  +G SEA +CR FS TL G+A+ W+ +L   
Sbjct: 202 PKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRG 261

Query: 380 SIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGESLNGYITRFSNEVVQVEGYDDA 439
           SI SFK L+R F TQF+G R R +P   LLTIKQR  ESL  Y+ RF+ E +QVEG  DA
Sbjct: 262 SISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDA 321

Query: 440 VALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYINAEELMKSKRAEREAQKVTTID 499
           V+L A ++G++DE L  S G+  P  ++E ++RAQ+Y++A E   SKR            
Sbjct: 322 VSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKRE----------P 381

Query: 500 KGRRKEERGKRSREEDED--WGRLRYSAGRGQPDQKEGRGRPEFRGKYEKYTPLSFSPDQ 559
            G+R + + +RS ++ +   W +   S+ +  P             K+EKYTP +   +Q
Sbjct: 382 DGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPP------------RKFEKYTPTTVPIEQ 441

Query: 560 VLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHTT 590
           VL  +    LLK P+R+K +  +R + ++C FHRDHGH T
Sbjct: 442 VLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHAT 448

BLAST of Lag0029702 vs. NCBI nr
Match: XP_024042801.1 (uncharacterized protein LOC112099618 [Citrus clementina])

HSP 1 Score: 211.5 bits (537), Expect = 2.0e-50
Identity = 121/273 (44.32%), Postives = 168/273 (61.54%), Query Frame = 0

Query: 316 LPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATKCRAFSLTLTGAAQQWYGKLPPKSIGS 375
           +P    Y GK+D+ +HL TYRSWM   GAS A  CRAFSLTL  AA++WY KL P SI S
Sbjct: 1   MPQIKLYGGKRDSTEHLKTYRSWMELQGASGAAMCRAFSLTLIEAARRWYRKLRPGSISS 60

Query: 376 FKELSRLFATQFLGARDRKKPQFNLLTIKQRPGESLNGYITRFSNEVVQVEGYDDAVALT 435
           F +LS++   QF+GARD++ P    L +KQ   ESL   ITRF+ EVV+VE Y DAVALT
Sbjct: 61  FAQLSQILVNQFVGARDQQFPPTYFLLVKQGKDESLKDCITRFNKEVVRVENYSDAVALT 120

Query: 436 AVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYINAEELMKSKR-AEREAQKVTTIDKGR 495
            ++ GLQ  +   S+ ++  R +TE ++RAQKY N +EL  +KR A  ++ +V   +K +
Sbjct: 121 TIMVGLQPGKFHYSLAKNPARTFTELLSRAQKYSNVDELTNAKRGANSDSPRVA--EKRK 180

Query: 496 RKEERGKRSREEDEDWGRLRYSAGRGQPDQKEGRGRPEFRGKYEKYTPLSFSPDQVLAAV 555
            KEE+ K      E   RL            E +G    + ++ +YTPL+   +QVL  +
Sbjct: 181 IKEEQIKNK----EKTSRL------------EKKGPKILQSRFPRYTPLNLPEEQVLMQI 240

Query: 556 NHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGH 588
            + DLL++P  +K  P+RRDRSK+C +HRDH H
Sbjct: 241 RNLDLLRKPKDIKIAPNRRDRSKYCRYHRDHRH 255

BLAST of Lag0029702 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 210.7 bits (535), Expect = 3.4e-50
Identity = 124/314 (39.49%), Postives = 177/314 (56.37%), Query Frame = 0

Query: 291 ESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATKC 350
           + ++ +++PPF  EIM+A  P  F+LP+   YDG+K  ++H++ YRS M   G S A  C
Sbjct: 9   DDMMAESEPPFTQEIMRARYPSGFRLPSIEPYDGQKYPMEHVELYRSLMEVQGVSSAILC 68

Query: 351 RAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGES 410
           RAF LTL+ AA++W+  L P SI SF EL R F   F  AR R KP   LLT+KQ  GES
Sbjct: 69  RAFPLTLSRAARRWFRMLRPNSISSFNELIREFTMHFHSARQRGKPVTYLLTVKQHEGES 128

Query: 411 LNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYIN 470
           L  YI R++ E  QV+GYDD VAL+ ++ GLQ  RL  SV ++ P  Y+E ++RA+KY N
Sbjct: 129 LREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRLWWSVAKNPPSTYSEMLSRAEKYAN 188

Query: 471 AEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREEDEDWGRLRYSAGRGQPDQ------ 530
           AEE  +SK             KGR K E  K  + +++     R     G+PDQ      
Sbjct: 189 AEERFQSK-------------KGREKGESSKNKKTKED-----RRDIRPGRPDQASRKDQ 248

Query: 531 ---------KEGRGRPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDR 590
                    +E R RP    ++  YT L+   + +L  + ++ L K P  LK +  RR++
Sbjct: 249 FRPWDQLSSQEPRSRPPV--QFTNYTELNAPREHILMQMKNSTLFKAPPPLKSDRSRRNQ 302

BLAST of Lag0029702 vs. NCBI nr
Match: XP_030924794.1 (uncharacterized protein LOC115951787 [Quercus lobata])

HSP 1 Score: 203.0 bits (515), Expect = 7.2e-48
Identity = 113/300 (37.67%), Postives = 166/300 (55.33%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L++L+ + D PF   +    +P KF++P    YDG KD + HL+T+++ M   G  +   
Sbjct: 98  LDNLVNRTDSPFTTSVNSFPLPQKFRMPQIESYDGVKDPLDHLETFKTLMHLQGVPDEIM 157

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF  TL G A+ W+ +L P SI +FKELS LF + F+G    KK    L+ IKQR  E
Sbjct: 158 CRAFPTTLKGPARVWFSRLTPNSINTFKELSTLFTSHFIGGHRYKKSTACLMNIKQREDE 217

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  YITRF+ E + ++  DD + + A  +GL+  + L S+ ++ P+  T+ + RA KY+
Sbjct: 218 TLRAYITRFNKEALSIDEADDKILVAAFTSGLRKGKFLFSLYKNDPKTMTDVLYRATKYM 277

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREEDEDWGRLRYSAGRGQPDQKEGRG 529
           NAE  + +                 R+E   KR R+ED    R R  A  G   + E R 
Sbjct: 278 NAEVALVA-----------------REERPKKRERQEDTRQDRGRKVAKTGD-QRDEKRS 337

Query: 530 RPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHTT 589
           RP   G++  +TPL+   DQVL  +     L  P +LKG+P++R R K+C FHRDHGH T
Sbjct: 338 RPP-TGRFTNFTPLTAPIDQVLMQIKDEGALTFPGKLKGDPNKRPRDKYCRFHRDHGHDT 378

BLAST of Lag0029702 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-53
Identity = 160/460 (34.78%), Postives = 236/460 (51.30%), Query Frame = 0

Query: 140 LKQPHPGTTYKRSSVRDHERKRGASGEEEEETDSATSK----LRQPREGEKLVLRESGSS 199
           L  P  G     +S  + ER+ G        T     K    L      E  ++R+    
Sbjct: 22  LGDPQVGGPEDGTSQPNQERQEGLXEXXALTTPEPFQKQFAVLEDKESDEVPLVRDPKKG 81

Query: 200 RGAERKGALDVPDEVSTVGSHRKIGAEAEAEAMAKAKILE--KVELEAKIRVELEGKLRA 259
           +G       D  +  ++VGS  +IG         + +I +  K + + K      GK   
Sbjct: 82  KGPTES---DTEESTNSVGSKLRIGGNTR----QRTRIFDPRKTKKQHKSPAPNGGKSDH 141

Query: 260 EAEAAAKAKVEAEQIKGKTKEGTQGS-ARPRDADRDY-LESLIGQADPPFVDEIMQAEVP 319
           +   +    ++    KGK  +  + S  R    ++ + LE L+ QAD PF +EIM+ +VP
Sbjct: 142 DDRNSEPISLD----KGKPADRPESSEKRHSHKEKGFDLEELLDQADSPFTEEIMREKVP 201

Query: 320 HKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATKCRAFSLTLTGAAQQWYGKLPPK 379
            KFKLPT  Q+D   D V HLD YR WM  +G SEA +CR FS TL G+A+ W+ +L   
Sbjct: 202 PKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRG 261

Query: 380 SIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGESLNGYITRFSNEVVQVEGYDDA 439
           SI SFK L+R F TQF+G R R +P   LLTIKQR  ESL  Y+ RF+ E +QVEG  DA
Sbjct: 262 SISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDA 321

Query: 440 VALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYINAEELMKSKRAEREAQKVTTID 499
           V+L A ++G++DE L  S G+  P  ++E ++RAQ+Y++A E   SKR            
Sbjct: 322 VSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKRE----------P 381

Query: 500 KGRRKEERGKRSREEDED--WGRLRYSAGRGQPDQKEGRGRPEFRGKYEKYTPLSFSPDQ 559
            G+R + + +RS ++ +   W +   S+ +  P             K+EKYTP +   +Q
Sbjct: 382 DGKRTDPKRERSGDKPQGSRWEKRDRSSQKDPP------------RKFEKYTPTTVPIEQ 441

Query: 560 VLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHTT 590
           VL  +    LLK P+R+K +  +R + ++C FHRDHGH T
Sbjct: 442 VLMEIKDQRLLKWPERMKASSAKRSKGRYCLFHRDHGHAT 448

BLAST of Lag0029702 vs. ExPASy TrEMBL
Match: A0A7N2N9G0 (Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.1e-49
Identity = 112/302 (37.09%), Postives = 171/302 (56.62%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L+ L+ + D PF   +    +P KF++P    YDG KD + HL+T+++ M   G ++A  
Sbjct: 486 LDDLVNRTDSPFTATVNSYPLPSKFRMPQIDSYDGVKDPLDHLETFKTLMHLQGVADAIM 545

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF  TL GAA+ W+ +L P SIG+FKELS  F   F+G    KK    L+++KQR  E
Sbjct: 546 CRAFPTTLKGAARIWFSRLAPNSIGTFKELSAQFTAHFIGGHRYKKSTACLMSMKQREDE 605

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  YI+RF+ E + V+  DD + + A   GL+  + L S+ ++ P+  +E + RA KY+
Sbjct: 606 TLRAYISRFNKEALSVDEADDKILVAAFTNGLKKGKFLFSLYKNDPKTMSEVLYRATKYM 665

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREED--EDWGRLRYSAGRGQPDQKEG 529
           NAE+ + +                 R+E+  KR R+ED  +D GR +   G    D++E 
Sbjct: 666 NAEDALLA-----------------REEKPRKRERQEDNRQDQGRKKTRTG----DRREE 725

Query: 530 RGRPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGH 589
           R      G++  +TPL+   DQVL  +   + L  P +LK +P++R R K+C FHRDHGH
Sbjct: 726 RRPRPMGGRFTSFTPLTAPVDQVLMQIKDEEALTFPGKLKSDPNKRSRDKYCRFHRDHGH 766

BLAST of Lag0029702 vs. ExPASy TrEMBL
Match: A0A2N9IF11 (Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51244 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.2e-48
Identity = 111/300 (37.00%), Postives = 168/300 (56.00%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L+ L+   D PF   ++   +P KF++P+   +DG KD + HL+++++ M   G  +   
Sbjct: 20  LDDLVHTTDSPFTKSVISFPLPSKFRMPSLDTFDGSKDPLDHLESFKTVMCLQGVPDEIM 79

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF  TL G A+ W+ K+ P S+GSF +LSRLF   F+GA+   +P  +LL IKQ+ GE
Sbjct: 80  CRAFPTTLKGPARVWFKKITPDSVGSFAQLSRLFFNHFIGAQRYGRPTTHLLNIKQKEGE 139

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  Y+TRF+ E + V+G DD V LTA I+GLQ    L SV +D P   TE +  AQ+++
Sbjct: 140 TLRSYLTRFNKETLLVDGADDKVVLTAFISGLQAGDFLFSVYKDPPSTMTEMMYEAQRHM 199

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREEDEDWGRLRYSAGRGQPDQKEGRG 529
           N EE + ++          T+ K R+ E   + +   D      R  A R +  + E R 
Sbjct: 200 NGEEALLARD--------QTVGKKRKWEHPDRPAEPHD-----TRPKAQRNRNRKHEDRN 259

Query: 530 RPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGHTT 589
              F  ++  +TPL+   D +   + +   LK P +L  +PD+R R K+C FHRDHGH T
Sbjct: 260 GRGFNERFNHFTPLNAPVDHIFMQIRNDPALKWPGKLLTDPDKRPRDKYCRFHRDHGHNT 306

BLAST of Lag0029702 vs. ExPASy TrEMBL
Match: A0A7N2LNH8 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-48
Identity = 111/302 (36.75%), Postives = 169/302 (55.96%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L+ L+ + D PF   +    +P+KF++P+   YDG KD + HL+T+++ M   G ++A  
Sbjct: 127 LDDLVNRTDSPFTAAVNSFPLPNKFRMPSMDSYDGVKDPLDHLETFKTLMHLQGVADAIM 186

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF  TL GAA+ W+ ++ P SI +FKELS  F T F+G    KK    L+ IKQR  E
Sbjct: 187 CRAFPTTLKGAARIWFSRIAPNSISTFKELSAQFTTHFIGGHRYKKSTACLMNIKQREEE 246

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  YI+RF+ E + ++  DD + + A   GL+  + L S+ ++ P+  +E + RA KY+
Sbjct: 247 TLRAYISRFNKEALSIDEADDKILVAAFTNGLKGGKFLFSLYKNDPKTMSEVLYRATKYM 306

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREED--EDWGRLRYSAGRGQPDQKEG 529
           NAE+ + S                 R++   KR R+ED  +D GR +   G    D++E 
Sbjct: 307 NAEDALLS-----------------REDRPKKRDRQEDSRQDQGRKKGRMG----DRRED 366

Query: 530 RGRPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGH 589
           R      G++  +TPL+   DQVL  +     L  P +LK +P +R R K+C FHRDHGH
Sbjct: 367 RRPKPMGGRFASFTPLNAPIDQVLMQIKDEGSLTFPGKLKSDPSKRPRDKYCRFHRDHGH 407

BLAST of Lag0029702 vs. ExPASy TrEMBL
Match: A0A7N2MG20 (Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.7e-48
Identity = 111/302 (36.75%), Postives = 169/302 (55.96%), Query Frame = 0

Query: 290 LESLIGQADPPFVDEIMQAEVPHKFKLPTFPQYDGKKDTVQHLDTYRSWMGFHGASEATK 349
           L+ L+ + D PF   +    +P+KF++P+   YDG KD + HL+T+++ M   G ++A  
Sbjct: 127 LDDLVNRTDSPFTAAVNSFPLPNKFRMPSMDSYDGVKDPLDHLETFKTLMHLQGVADAIM 186

Query: 350 CRAFSLTLTGAAQQWYGKLPPKSIGSFKELSRLFATQFLGARDRKKPQFNLLTIKQRPGE 409
           CRAF  TL GAA+ W+ ++ P SI +FKELS  F T F+G    KK    L+ IKQR  E
Sbjct: 187 CRAFPTTLKGAARIWFSRIAPNSISTFKELSAQFTTHFIGGHRYKKSTACLMNIKQREEE 246

Query: 410 SLNGYITRFSNEVVQVEGYDDAVALTAVIAGLQDERLLNSVGEDQPRMYTEFVARAQKYI 469
           +L  YI+RF+ E + ++  DD + + A   GL+  + L S+ ++ P+  +E + RA KY+
Sbjct: 247 TLRAYISRFNKEALSIDEADDKILVAAFTNGLKGGKFLFSLYKNDPKTMSEVLYRATKYM 306

Query: 470 NAEELMKSKRAEREAQKVTTIDKGRRKEERGKRSREED--EDWGRLRYSAGRGQPDQKEG 529
           NAE+ + S                 R++   KR R+ED  +D GR +   G    D++E 
Sbjct: 307 NAEDALLS-----------------REDRPKKRDRQEDSRQDQGRKKGRMG----DRRED 366

Query: 530 RGRPEFRGKYEKYTPLSFSPDQVLAAVNHTDLLKRPDRLKGNPDRRDRSKFCYFHRDHGH 589
           R      G++  +TPL+   DQVL  +     L  P +LK +P +R R K+C FHRDHGH
Sbjct: 367 RRPKPMGGRFASFTPLNAPIDQVLMQIKDEGSLTFPGKLKSDPSKRPRDKYCRFHRDHGH 407

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024041095.11.4e-5640.86uncharacterized protein LOC112098853 [Citrus clementina][more]
XP_022158830.14.4e-5334.78uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_024042801.12.0e-5044.32uncharacterized protein LOC112099618 [Citrus clementina][more]
XP_024047974.13.4e-5039.49uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_030924794.17.2e-4837.67uncharacterized protein LOC115951787 [Quercus lobata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DWY02.1e-5334.78uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A7N2N9G04.1e-4937.09Reverse transcriptase OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A2N9IF111.2e-4837.00Ribonuclease H OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS51244 PE=4 SV=1[more]
A0A7N2LNH82.7e-4836.75Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1[more]
A0A7N2MG202.7e-4836.75Ribonuclease H OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 352..443
e-value: 1.7E-13
score: 50.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..118
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..206
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..16
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 478..535
NoneNo IPR availablePANTHERPTHR33223FAMILY NOT NAMEDcoord: 312..494

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029702.1Lag0029702.1mRNA