Lag0029693 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029693
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrovirus-related Pol polyprotein from transposon 297
Location	chr8: 41240318 .. 41241957 (+)
RNA-Seq Expression	Lag0029693
Synteny	Lag0029693

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGATTTTTTGCTCTCAAGTAAGAATCCACTGTAGCTGACTATAGGGAAAAGTTTGAGGAATTTGCTGATGCTGTAGATAACCTAGACGACGATTCTTTAGAAGGAAAATTTATAGATGGACTTACTGAAGACATTAAGGTTGAAATGAGGATTTGTATGCATGTTGGGCTTAGGGCTAAAATGGAAATGGCCCAAAAGATTGAGGACAAATTGTTGCATCTTGTAAGCAAACAGACGGGAGTTTCCTTGAGTCCAAAAGTAGTGGGCCAAGTGTTAGTAATTACAAGCCCACTTCGTATGGGGATGGGGCCTGCGCTCGTACCATATCCGTAAACCCGAGTAAGCTCGGTGAAAGATTACGCAAAGACACGTCAGGAAAATCATCGGAGGCCTCTTCTTCATCTAATCCGTACAAACCGCTCACTGAGACAAAGTACCAGAACAAGCGTGATAGAGGACTTTGCTTCAGGTGTGAGGTAAAATTCTTCCCAGGCCATCGGTGTAAGAAAAAAGAGTTGCAAGTCATGATCATACATGATCGTGAGGATGAGGAAGCGGAAAACGGTGATGAGGTTGCCATGCAAGCCGTGGAGATGGCTGATAACAAGAACGATGAGAAACCGACAGAGGAGGAGGCCGAGTTAGCATTGAACTCCATGGTTGGTTTAGGGTCGCCTAAGACCTTAAAGGTCAAAGGCTTGATTGGGTCTCGAGAGGTAGTCGTGCTGATCGATAGCAGCGCCACTCACAATTTTATTGCATCCCCATTAGTAAAAGAACTTCAACTTCCGACGGGCCAGACTGAAGGCTACGGAGTTGTGCTGGGTACCGAAGGATCTTCGATTAAAGGCACCGAGATTTGTAGGGAAGTGGTGTTAACGCTAGGGCCGGTCACGATTGTGCAAGATTTCTTGCCGTTACCGCTGGGCAGCGCGGACATGATCCTCAGCGTTCAATGGCTATCCACCTTGGGAGATGTTATGACCAACCATCAAAGTTTGTTGATGACGTTCATGCTTGGAAAATCTTCAGTCGTGCTCCAAGGTGACCCATCTCTAGTGCGCTCGCAGGTAACGCTTAAGACTTTGATCAAGTAGCTCAAGTTGGAGAAACAGGGGTTTCTGGTGGAGCTAATGTTCTCCAAGGCCAAAGGGGGACATTACGGATAGTCTGAGTAATGGTTGGGAGGAAGTTCCAGAATGTATCCGTTCGGTTCTTGTCCGCCATTCTTCCGTTTTCCAACCTTTGCCGGGGTTACCACCTGAGCATGATGGGGATCATCGCATTGAGTTATTACCAGGTACGGCCCCCGTCAGTGTACGCCCTTATCGATACCCTCAGTGCCAAAAAGACGAGATTGACCCACAAAGACTTCATTCAATAAAGAAAGAACCTAATAAATTTTGTGGCCAACATTTCTCCACTTTTTTAGTGGAAACTTTAGGTGCATTGGTAATGAATAAATCTATACATTAGCTGTTATATTGTTTTGGCCACACCTAAATTCTTATTTGCAACCGTTTACACATTCAACTGTTTGACTTTTGTACATTTGGTAATGATTTTTGAATGCTTTGTCATGCTCAAAATCATTTCTATTTGAAATGATAATGTTTGACAATGGTAGATAATTGA

mRNA sequence

ATGAACGATTTTTTGCTCTCAAACGGGAGTTTCCTTGAGTCCAAAAGTAGTGGGCCAAGTGTTAGTAATTACAAGCCCACTTCGTATGGGGATGGGGCCTGCGCTCGTACCATATCCGTAAACCCGAGTAAGCTCGGTGAAAGATTACGCAAAGACACGTCAGGAAAATCATCGGAGGCCTCTTCTTCATCTAATCCGTACAAACCGCTCACTGAGACAAAGTACCAGAACAAGCGTGATAGAGGACTTTGCTTCAGGTGTGAGGTAAAATTCTTCCCAGGCCATCGGTGTAAGAAAAAAGAGTTGCAAGTCATGATCATACATGATCGTGAGGATGAGGAAGCGGAAAACGGTGATGAGGTTGCCATGCAAGCCGTGGAGATGGCTGATAACAAGAACGATGAGAAACCGACAGAGGAGGAGGCCGAGTTAGCATTGAACTCCATGGTTGGTTTAGGGTCGCCTAAGACCTTAAAGGTCAAAGGCTTGATTGGGTCTCGAGAGGTAGTCGTGCTGATCGATAGCAGCGCCACTCACAATTTTATTGCATCCCCATTAGTAAAAGAACTTCAACTTCCGACGGGCCAGACTGAAGGCTACGGAGTTGTGCTGGGTACCGAAGGATCTTCGATTAAAGGCACCGAGATTTGTAGGGAAGTGGTGTTAACGCTAGGGCCGGTCACGATTGTGCAAGATTTCTTGCCGTTACCGCTGGGCAGCGCGGACATGATCCTCAGCGTTCAATGGCTATCCACCTTGGGAGATGTTATGACCAACCATCAAAGTTTGTTGATGACGTTCATGCTTGGAAAATCTTCAGTCGTGCTCCAAGGTGACCCATCTCTAGTGCGCTCGCAGGGGGACATTACGGATAGTCTGAGTAATGGTTGGGAGGAAGTTCCAGAATGTATCCGTTCGGTTCTTGTCCGCCATTCTTCCGTTTTCCAACCTTTGCCGGGGTTACCACCTGAGCATGATGGGGATCATCGCATTGAGTTATTACCAGATAATTGA

Coding sequence (CDS)

ATGAACGATTTTTTGCTCTCAAACGGGAGTTTCCTTGAGTCCAAAAGTAGTGGGCCAAGTGTTAGTAATTACAAGCCCACTTCGTATGGGGATGGGGCCTGCGCTCGTACCATATCCGTAAACCCGAGTAAGCTCGGTGAAAGATTACGCAAAGACACGTCAGGAAAATCATCGGAGGCCTCTTCTTCATCTAATCCGTACAAACCGCTCACTGAGACAAAGTACCAGAACAAGCGTGATAGAGGACTTTGCTTCAGGTGTGAGGTAAAATTCTTCCCAGGCCATCGGTGTAAGAAAAAAGAGTTGCAAGTCATGATCATACATGATCGTGAGGATGAGGAAGCGGAAAACGGTGATGAGGTTGCCATGCAAGCCGTGGAGATGGCTGATAACAAGAACGATGAGAAACCGACAGAGGAGGAGGCCGAGTTAGCATTGAACTCCATGGTTGGTTTAGGGTCGCCTAAGACCTTAAAGGTCAAAGGCTTGATTGGGTCTCGAGAGGTAGTCGTGCTGATCGATAGCAGCGCCACTCACAATTTTATTGCATCCCCATTAGTAAAAGAACTTCAACTTCCGACGGGCCAGACTGAAGGCTACGGAGTTGTGCTGGGTACCGAAGGATCTTCGATTAAAGGCACCGAGATTTGTAGGGAAGTGGTGTTAACGCTAGGGCCGGTCACGATTGTGCAAGATTTCTTGCCGTTACCGCTGGGCAGCGCGGACATGATCCTCAGCGTTCAATGGCTATCCACCTTGGGAGATGTTATGACCAACCATCAAAGTTTGTTGATGACGTTCATGCTTGGAAAATCTTCAGTCGTGCTCCAAGGTGACCCATCTCTAGTGCGCTCGCAGGGGGACATTACGGATAGTCTGAGTAATGGTTGGGAGGAAGTTCCAGAATGTATCCGTTCGGTTCTTGTCCGCCATTCTTCCGTTTTCCAACCTTTGCCGGGGTTACCACCTGAGCATGATGGGGATCATCGCATTGAGTTATTACCAGATAATTGA

Protein sequence

MNDFLLSNGSFLESKSSGPSVSNYKPTSYGDGACARTISVNPSKLGERLRKDTSGKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEEAENGDEVAMQAVEMADNKNDEKPTEEEAELALNSMVGLGSPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGPVTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVRSQGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIELLPDN

Homology

[Close]

BLAST of Lag0029693 vs. NCBI nr
Match: CAN78588.1 (hypothetical protein VITISV_043911 [Vitis vinifera])

HSP 1 Score: 256.5 bits (654), Expect = 3.1e-64
Identity = 137/301 (45.51%), Postives = 200/301 (66.45%), Query Frame = 0


Query: 44   KLGE--RLRKDTSGKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKE 103
            K+GE  + R    G+ + +     P K LTE++ Q +R++GL F+CE KF PGHRC KKE
Sbjct: 951  KIGENFQTRAVAVGEKTMSQRREIPIKRLTESELQARREKGLWFKCEEKFSPGHRC-KKE 1010

Query: 104  LQVMIIHDREDEEAENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLG 163
            L+V+++H+ E+E+               DN+ D++ TEE A        EL+LNS+VGL 
Sbjct: 1011 LRVLLVHEDEEED---------------DNQFDDRATEEPALIELKDAVELSLNSVVGLT 1070

Query: 164  SPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKG 223
            +P T+K+KG IGS+EV++L+DS ATHNF++  LV++L LP   T  YGV++GT G S+KG
Sbjct: 1071 TPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGT-GISVKG 1130

Query: 224  TEICREVVLTLGPVTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSS 283
              ICR V +++  +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ 
Sbjct: 1131 KGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAV 1190

Query: 284  VVLQGDPSLVRSQGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIEL 335
            +VL+GDPSL R++   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L
Sbjct: 1191 MVLKGDPSLSRTETSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPPSRDIDHAIQL 1234

[Close]

BLAST of Lag0029693 vs. NCBI nr
Match: RVW54082.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 250.0 bits (637), Expect = 2.9e-62
Identity = 136/312 (43.59%), Postives = 195/312 (62.50%), Query Frame = 0


Query: 55  GKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEE 114
           G+ + +     P K LTE++ Q +R++GLCF+CE KF PGHRC KKEL+V+++H  E+E+
Sbjct: 306 GEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRC-KKELRVLLVHKDEEED 365

Query: 115 AENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGS 174
                          DN+ D++ TEE A        EL+LNS+VGL +P T+K+KG IGS
Sbjct: 366 ---------------DNQFDDRATEEPALIELKDIVELSLNSVVGLTTPGTMKIKGTIGS 425

Query: 175 REVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGP 234
           +EV++L+DS ATHNF++  LV++L LP   T  YGV++GT G S+KG  ICR V +++  
Sbjct: 426 KEVIILVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGT-GISVKGKGICRGVCISMQG 485

Query: 235 VTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVRS- 294
           +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R+ 
Sbjct: 486 LTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTK 545

Query: 295 ----------------------QGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPP 336
                                 Q   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP
Sbjct: 546 VSLKAMARALQHHSQGVWVELCQTSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPP 600

[Close]

BLAST of Lag0029693 vs. NCBI nr
Match: RVW86019.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Vitis vinifera])

HSP 1 Score: 243.8 bits (621), Expect = 2.1e-60
Identity = 133/297 (44.78%), Postives = 186/297 (62.63%), Query Frame = 0


Query: 70  LTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEEAENGDEVAMQAVEMA 129
           LTE++ Q  R++GLCF+CE KF PGHRC KKELQV+++H+ E+E+               
Sbjct: 221 LTESELQAHREKGLCFKCEEKFSPGHRC-KKELQVLLVHEDEEED--------------- 280

Query: 130 DNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGSREVVVLIDSSATHNF 189
           DN+ D + TEE A        EL+LNS+VGL +  T+K+KG IGS+EV++L+DS ATHNF
Sbjct: 281 DNQFDGRATEEPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGATHNF 340

Query: 190 IASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGPVTIVQDFLPLPLGSA 249
           ++  LV++L LP   T  YGV++GT G S+KG  ICR V + +  +T+V+DFLPL LG+ 
Sbjct: 341 LSLELVQQLALPLTTTTSYGVMMGT-GISVKGKGICRGVCILMQGLTVVEDFLPLELGNT 400

Query: 250 DMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVRS---------------- 309
           D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R+                
Sbjct: 401 DVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTEVSLKAMARALQHHSQ 460

Query: 310 -------QGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIELLP 336
                  Q   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L+P
Sbjct: 461 GVWVELCQTSTTSELSEGVQEVPKTVKEVLAQHQQIFRPITGLPPSRDIDHAIQLIP 500

[Close]

BLAST of Lag0029693 vs. NCBI nr
Match: RVX19673.1 (Retrovirus-related Pol polyprotein from transposon opus [Vitis vinifera])

HSP 1 Score: 243.4 bits (620), Expect = 2.7e-60
Identity = 133/301 (44.19%), Postives = 190/301 (63.12%), Query Frame = 0


Query: 66  PYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEEAENGDEVAMQA 125
           P K LTE++ Q +R +GLCF+CE KF P HRC KKEL+V+++H+ E+E+           
Sbjct: 8   PIKRLTESELQARRKKGLCFKCEEKFSPSHRC-KKELRVLLVHEDEEED----------- 67

Query: 126 VEMADNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGSREVVVLIDSSA 185
               DN+ D + T+E A        +L+LNS+VGL +P T+K+KG+IGS+EV++L+DS A
Sbjct: 68  ----DNQFDNRATKEPALIELKDAMKLSLNSVVGLTTPGTMKIKGMIGSKEVIILVDSGA 127

Query: 186 THNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGPVTIVQDFLPLP 245
           THNF++  LV++L LP   T  Y V++GT G S+KG  ICR V +++  +T+V+DFLPL 
Sbjct: 128 THNFLSLELVQQLALPLTTTTSYEVMMGT-GISVKGKGICRGVCISMQGLTVVEDFLPLE 187

Query: 246 LGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVR------------- 305
           LG+ D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R             
Sbjct: 188 LGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRIEVSLKAMTRALQ 247

Query: 306 --SQG--------DITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIELL 336
             SQG          T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L+
Sbjct: 248 HHSQGVWVELYQTSTTSDLSEGVQEVPKIVKEVLAQHQQIFEPITGLPPSRDIDHAIQLI 291

[Close]

BLAST of Lag0029693 vs. NCBI nr
Match: RVX15868.1 (Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera])

HSP 1 Score: 239.6 bits (610), Expect = 4.0e-59
Identity = 136/325 (41.85%), Postives = 197/325 (60.62%), Query Frame = 0


Query: 44  KLGE--RLRKDTSGKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKE 103
           K+GE  + R    G+ + +     P K LTE++ Q +R++GLCF+CE KF PGHRC KK+
Sbjct: 25  KIGENFQTRAVAVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRC-KKQ 84

Query: 104 LQVMIIHDREDEEAENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLG 163
           L+V+++H+ ED++               DN+ D + TEE A        EL+LNS+VGL 
Sbjct: 85  LRVLLVHEDEDKD---------------DNQFDGRATEEPALIELKDAVELSLNSVVGLT 144

Query: 164 SPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKG 223
           +P T+K+KG I S+EV++L+DS ATHNF++  LV++L LP   T  YGV++GT   S+KG
Sbjct: 145 TPGTMKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTR-ISVKG 204

Query: 224 TEICREVVLTLGPVTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSS 283
             ICR V +++  +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ 
Sbjct: 205 KGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAV 264

Query: 284 VVLQGDPSLVRS-----------------------QGDITDSLSNGWEEVPECIRSVLVR 336
           +VL+GDPSL R+                       Q   T  LS   +EVP+ ++ VL +
Sbjct: 265 IVLKGDPSLSRTEVSLKAMARALQHHSQGVWVELCQTSTTSDLSEEVQEVPKTVKEVLAQ 324

[Close]

BLAST of Lag0029693 vs. ExPASy TrEMBL
Match: A5B2I6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_043911 PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.5e-64
Identity = 137/301 (45.51%), Postives = 200/301 (66.45%), Query Frame = 0


Query: 44   KLGE--RLRKDTSGKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKE 103
            K+GE  + R    G+ + +     P K LTE++ Q +R++GL F+CE KF PGHRC KKE
Sbjct: 951  KIGENFQTRAVAVGEKTMSQRREIPIKRLTESELQARREKGLWFKCEEKFSPGHRC-KKE 1010

Query: 104  LQVMIIHDREDEEAENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLG 163
            L+V+++H+ E+E+               DN+ D++ TEE A        EL+LNS+VGL 
Sbjct: 1011 LRVLLVHEDEEED---------------DNQFDDRATEEPALIELKDAVELSLNSVVGLT 1070

Query: 164  SPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKG 223
            +P T+K+KG IGS+EV++L+DS ATHNF++  LV++L LP   T  YGV++GT G S+KG
Sbjct: 1071 TPGTMKIKGTIGSKEVIILVDSGATHNFLSLELVQQLTLPLTTTTSYGVMMGT-GISVKG 1130

Query: 224  TEICREVVLTLGPVTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSS 283
              ICR V +++  +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ 
Sbjct: 1131 KGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAV 1190

Query: 284  VVLQGDPSLVRSQGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIEL 335
            +VL+GDPSL R++   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L
Sbjct: 1191 MVLKGDPSLSRTETSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPPSRDIDHAIQL 1234

[Close]

BLAST of Lag0029693 vs. ExPASy TrEMBL
Match: A0A438F372 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_407 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.4e-62
Identity = 136/312 (43.59%), Postives = 195/312 (62.50%), Query Frame = 0


Query: 55  GKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEE 114
           G+ + +     P K LTE++ Q +R++GLCF+CE KF PGHRC KKEL+V+++H  E+E+
Sbjct: 306 GEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRC-KKELRVLLVHKDEEED 365

Query: 115 AENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGS 174
                          DN+ D++ TEE A        EL+LNS+VGL +P T+K+KG IGS
Sbjct: 366 ---------------DNQFDDRATEEPALIELKDIVELSLNSVVGLTTPGTMKIKGTIGS 425

Query: 175 REVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGP 234
           +EV++L+DS ATHNF++  LV++L LP   T  YGV++GT G S+KG  ICR V +++  
Sbjct: 426 KEVIILVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGT-GISVKGKGICRGVCISMQG 485

Query: 235 VTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVRS- 294
           +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R+ 
Sbjct: 486 LTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTK 545

Query: 295 ----------------------QGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPP 336
                                 Q   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP
Sbjct: 546 VSLKAMARALQHHSQGVWVELCQTSTTSDLSEGVQEVPKTVKEVLAQHQQIFEPITGLPP 600

[Close]

BLAST of Lag0029693 vs. ExPASy TrEMBL
Match: A0A438HNN1 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=29760 GN=pol_1584 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.0e-60
Identity = 133/297 (44.78%), Postives = 186/297 (62.63%), Query Frame = 0


Query: 70  LTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEEAENGDEVAMQAVEMA 129
           LTE++ Q  R++GLCF+CE KF PGHRC KKELQV+++H+ E+E+               
Sbjct: 221 LTESELQAHREKGLCFKCEEKFSPGHRC-KKELQVLLVHEDEEED--------------- 280

Query: 130 DNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGSREVVVLIDSSATHNF 189
           DN+ D + TEE A        EL+LNS+VGL +  T+K+KG IGS+EV++L+DS ATHNF
Sbjct: 281 DNQFDGRATEEPALIELKDAVELSLNSVVGLTTSGTMKIKGTIGSKEVIILVDSGATHNF 340

Query: 190 IASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGPVTIVQDFLPLPLGSA 249
           ++  LV++L LP   T  YGV++GT G S+KG  ICR V + +  +T+V+DFLPL LG+ 
Sbjct: 341 LSLELVQQLALPLTTTTSYGVMMGT-GISVKGKGICRGVCILMQGLTVVEDFLPLELGNT 400

Query: 250 DMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVRS---------------- 309
           D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R+                
Sbjct: 401 DVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRTEVSLKAMARALQHHSQ 460

Query: 310 -------QGDITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIELLP 336
                  Q   T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L+P
Sbjct: 461 GVWVELCQTSTTSELSEGVQEVPKTVKEVLAQHQQIFRPITGLPPSRDIDHAIQLIP 500

[Close]

BLAST of Lag0029693 vs. ExPASy TrEMBL
Match: A0A438KEN1 (Retrovirus-related Pol polyprotein from transposon opus OS=Vitis vinifera OX=29760 GN=pol_521 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.3e-60
Identity = 133/301 (44.19%), Postives = 190/301 (63.12%), Query Frame = 0


Query: 66  PYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKELQVMIIHDREDEEAENGDEVAMQA 125
           P K LTE++ Q +R +GLCF+CE KF P HRC KKEL+V+++H+ E+E+           
Sbjct: 8   PIKRLTESELQARRKKGLCFKCEEKFSPSHRC-KKELRVLLVHEDEEED----------- 67

Query: 126 VEMADNKNDEKPTEEEA--------ELALNSMVGLGSPKTLKVKGLIGSREVVVLIDSSA 185
               DN+ D + T+E A        +L+LNS+VGL +P T+K+KG+IGS+EV++L+DS A
Sbjct: 68  ----DNQFDNRATKEPALIELKDAMKLSLNSVVGLTTPGTMKIKGMIGSKEVIILVDSGA 127

Query: 186 THNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTEICREVVLTLGPVTIVQDFLPLP 245
           THNF++  LV++L LP   T  Y V++GT G S+KG  ICR V +++  +T+V+DFLPL 
Sbjct: 128 THNFLSLELVQQLALPLTTTTSYEVMMGT-GISVKGKGICRGVCISMQGLTVVEDFLPLE 187

Query: 246 LGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSSVVLQGDPSLVR------------- 305
           LG+ D+IL + WL TLGDV  N + L M   +GK+ +VL+GDPSL R             
Sbjct: 188 LGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAVIVLKGDPSLSRIEVSLKAMTRALQ 247

Query: 306 --SQG--------DITDSLSNGWEEVPECIRSVLVRHSSVFQPLPGLPPEHDGDHRIELL 336
             SQG          T  LS G +EVP+ ++ VL +H  +F+P+ GLPP  D DH I+L+
Sbjct: 248 HHSQGVWVELYQTSTTSDLSEGVQEVPKIVKEVLAQHQQIFEPITGLPPSRDIDHAIQLI 291

[Close]

BLAST of Lag0029693 vs. ExPASy TrEMBL
Match: A0A438K3V9 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_727 PE=4 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.9e-59
Identity = 136/325 (41.85%), Postives = 197/325 (60.62%), Query Frame = 0


Query: 44  KLGE--RLRKDTSGKSSEASSSSNPYKPLTETKYQNKRDRGLCFRCEVKFFPGHRCKKKE 103
           K+GE  + R    G+ + +     P K LTE++ Q +R++GLCF+CE KF PGHRC KK+
Sbjct: 25  KIGENFQTRAVAVGEKTMSQRREIPIKRLTESELQARREKGLCFKCEEKFSPGHRC-KKQ 84

Query: 104 LQVMIIHDREDEEAENGDEVAMQAVEMADNKNDEKPTEEEA--------ELALNSMVGLG 163
           L+V+++H+ ED++               DN+ D + TEE A        EL+LNS+VGL 
Sbjct: 85  LRVLLVHEDEDKD---------------DNQFDGRATEEPALIELKDAVELSLNSVVGLT 144

Query: 164 SPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKG 223
           +P T+K+KG I S+EV++L+DS ATHNF++  LV++L LP   T  YGV++GT   S+KG
Sbjct: 145 TPGTMKIKGTIRSKEVIILVDSGATHNFLSLELVQQLALPLTTTTSYGVMMGTR-ISVKG 204

Query: 224 TEICREVVLTLGPVTIVQDFLPLPLGSADMILSVQWLSTLGDVMTNHQSLLMTFMLGKSS 283
             ICR V +++  +T+V+DFLPL LG+ D+IL + WL TLGDV  N + L M   +GK+ 
Sbjct: 205 KGICRGVCISMQGLTVVEDFLPLELGNTDVILGMPWLGTLGDVKVNWKMLTMKIKMGKAV 264

Query: 284 VVLQGDPSLVRS-----------------------QGDITDSLSNGWEEVPECIRSVLVR 336
           +VL+GDPSL R+                       Q   T  LS   +EVP+ ++ VL +
Sbjct: 265 IVLKGDPSLSRTEVSLKAMARALQHHSQGVWVELCQTSTTSDLSEEVQEVPKTVKEVLAQ 324

[Close]

BLAST of Lag0029693 vs. TAIR 10
Match: AT3G29750.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 64.7 bits (156), Expect = 1.6e-10
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 149 MVGLGSPKTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEG 208
           ++ L   K ++  G I   +VVV IDS AT NFI   L   L+LPT  T    V+LG + 
Sbjct: 115 VIDLTRNKGMRFYGFILDHKVVVAIDSGATDNFILVELAFSLKLPTSITNQASVLLG-QR 174

Query: 209 SSIKGTEICREVVLTLGPVTIVQDFLPLPLG--SADMILSVQWLSTLGDVMTNHQSLLMT 268
             I+    C  + L +  V I ++FL L L     D+IL  +WLS LG+ M N Q+   +
Sbjct: 175 QCIQSVGTCLGIRLWVQEVEITENFLLLDLAKTDVDVILGYEWLSKLGETMVNWQNQDFS 234

Query: 269 FMLGKSSVVL 277
           F   +  + L
Sbjct: 235 FSHNQQWITL 243

[Close]

BLAST of Lag0029693 vs. TAIR 10
Match: AT3G30770.1 (Eukaryotic aspartyl protease family protein )

HSP 1 Score: 50.8 bits (120), Expect = 2.4e-06
Identity = 33/88 (37.50%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 156 KTLKVKGLIGSREVVVLIDSSATHNFIASPLVKELQLPTGQTEGYGVVLGTEGSSIKGTE 215
           K ++  G I   +VVV+IDS AT+NFI+  L   L+LPT  T    V+LG +   I+   
Sbjct: 282 KDMRFYGFISCHKVVVVIDSGATNNFISDELALVLKLPTSTTNQASVLLG-QRQCIQTIG 341

Query: 216 ICREVVLTLGPVTIVQDFLPLPLGSADM 244
            C  + L +  V I ++FL L L   D+
Sbjct: 342 TCFGINLLVQEVEINENFLLLDLTKTDV 368

The following BLAST results are available for this feature:

BLAST of Lag0029693 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN78588.1	3.1e-64	45.51	hypothetical protein VITISV_043911 [Vitis vinifera]	[more]
RVW54082.1	2.9e-62	43.59	Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]	[more]
RVW86019.1	2.1e-60	44.78	Retrovirus-related Pol polyprotein from transposon 17.6 [Vitis vinifera]	[more]
RVX19673.1	2.7e-60	44.19	Retrovirus-related Pol polyprotein from transposon opus [Vitis vinifera]	[more]
RVX15868.1	4.0e-59	41.85	Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]	[more]

BLAST of Lag0029693 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0029693 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5B2I6	1.5e-64	45.51	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A438F372	1.4e-62	43.59	Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976...	[more]
A0A438HNN1	1.0e-60	44.78	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=297...	[more]
A0A438KEN1	1.3e-60	44.19	Retrovirus-related Pol polyprotein from transposon opus OS=Vitis vinifera OX=297...	[more]
A0A438K3V9	1.9e-59	41.85	Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976...	[more]

BLAST of Lag0029693 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G29750.1	1.6e-10	35.38	Eukaryotic aspartyl protease family protein	[more]
AT3G30770.1	2.4e-06	37.50	Eukaryotic aspartyl protease family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 144..273 e-value: 6.2E-13 score: 50.6
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 158..254
None	No IPR available	PFAM	PF08284	RVP_2	coord: 162..257 e-value: 3.1E-12 score: 46.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..73
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR34482:SF20	SUBFAMILY NOT NAMED	coord: 51..335
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 51..335
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 160..250 e-value: 1.17966E-16 score: 72.3692

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029693.1	Lag0029693.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process