Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGACTGTCAAACTCCCAACATCCTGCTTGATCAGAAATGCTGCACCAAGGAGATCCTATGCCCTAGTGCAAAGGCCATCTTCCCTGGGTTCTGTTAGGAATGTATCCTGGGCATTTGGATTGAAGTCTACCTCGTTCAAAGTGTCGGCAATGGCTTCCTACAAAGTGAAATTAATTGGACCAGACGGTGTAGAAAACGAGTTTGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCCGAGAATGCTGGAGTAGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGCGCTGGTCAAGTAGTTTCTGGGACAGTGGACCAGACAGACGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTCGCATATCCACAATCCGACTGTGTCATCCACACACACAAGGAAAGTGATTTGTACTGA
mRNA sequence
ATGTCGACTGTCAAACTCCCAACATCCTGCTTGATCAGAAATGCTGCACCAAGGAGATCCTATGCCCTAGTGCAAAGGCCATCTTCCCTGGGTTCTGTTAGGAATGTATCCTGGGCATTTGGATTGAAGTCTACCTCGTTCAAAGTGTCGGCAATGGCTTCCTACAAAGTGAAATTAATTGGACCAGACGGTGTAGAAAACGAGTTTGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCCGAGAATGCTGGAGTAGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGCGCTGGTCAAGTAGTTTCTGGGACAGTGGACCAGACAGACGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTCGCATATCCACAATCCGACTGTGTCATCCACACACACAAGGAAAGTGATTTGTACTGA
Coding sequence (CDS)
ATGTCGACTGTCAAACTCCCAACATCCTGCTTGATCAGAAATGCTGCACCAAGGAGATCCTATGCCCTAGTGCAAAGGCCATCTTCCCTGGGTTCTGTTAGGAATGTATCCTGGGCATTTGGATTGAAGTCTACCTCGTTCAAAGTGTCGGCAATGGCTTCCTACAAAGTGAAATTAATTGGACCAGACGGTGTAGAAAACGAGTTTGAGGCCCCTGATGATGCTTACATTCTCGACTCAGCCGAGAATGCTGGAGTAGATCTACCTTACTCTTGCAGGGCTGGGGCTTGCTCTACTTGCGCTGGTCAAGTAGTTTCTGGGACAGTGGACCAGACAGACGGATCGTTCTTGGACGACAAGCAGATGGAGAAGGGGTATGTCCTAACCTGCGTCGCATATCCACAATCCGACTGTGTCATCCACACACACAAGGAAAGTGATTTGTACTGA
Protein sequence
MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLIGPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKESDLY
Homology
BLAST of Lag0029678 vs. NCBI nr
Match:
XP_022990479.1 (ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R-B2-like [Cucurbita maxima])
HSP 1 Score: 271.6 bits (693), Expect = 4.2e-69
Identity = 133/149 (89.26%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 1 MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLI 60
MSTV+LPTSCLIRNA PR+S ALVQRPSSLGS RNVS AFGLKS+SFKVSAMASYKVKLI
Sbjct: 1 MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRNVSRAFGLKSSSFKVSAMASYKVKLI 60
Query: 61 GPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
GP+G ENEFEAPDD YILDSAE+AG+DLPYSCRAGACSTCAGQVVSGTVDQ DGSFLDD+
Sbjct: 61 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQADGSFLDDQ 120
Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
QMEKGYVLTCVAYPQSDCVIHTHKE DL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149
BLAST of Lag0029678 vs. NCBI nr
Match:
XP_023533022.1 (ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 270.4 bits (690), Expect = 9.3e-69
Identity = 132/149 (88.59%), Postives = 142/149 (95.30%), Query Frame = 0
Query: 1 MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLI 60
MSTV+LPTSCLIRNA PR+S ALVQRPSSLGS R+VS AFGLK++SFKVSAMASYKVKLI
Sbjct: 1 MSTVRLPTSCLIRNATPRKSCALVQRPSSLGSFRSVSRAFGLKASSFKVSAMASYKVKLI 60
Query: 61 GPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
GP+G ENEFEAPDD YILDSAE+AG+DLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
QMEKGYVLTCVAYPQSDCVIHTHKE DL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149
BLAST of Lag0029678 vs. NCBI nr
Match:
KAG7032935.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 1 MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLI 60
MSTV+LPTSCLIRNA PR+S ALVQRPSSL S R+VS AFGLKS+SFKVSAMASYKVKLI
Sbjct: 10 MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 69
Query: 61 GPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
GP+G ENEFEAPDD YILDSAE+AG+DLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 70 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 129
Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
QMEKGYVLTCVAYPQSDCVIHTHKE DL+
Sbjct: 130 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 158
BLAST of Lag0029678 vs. NCBI nr
Match:
KAG6602256.1 (Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 1 MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLI 60
MSTV+LPTSCLIRNA PR+S ALVQRPSSL S R+VS AFGLKS+SFKVSAMASYKVKLI
Sbjct: 382 MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 441
Query: 61 GPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
GP+G ENEFEAPDD YILDSAE+AG+DLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 442 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 501
Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
QMEKGYVLTCVAYPQSDCVIHTHKE DL+
Sbjct: 502 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 530
BLAST of Lag0029678 vs. NCBI nr
Match:
XP_022922440.1 (ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root R-B2-like [Cucurbita moschata])
HSP 1 Score: 269.2 bits (687), Expect = 2.1e-68
Identity = 132/149 (88.59%), Postives = 141/149 (94.63%), Query Frame = 0
Query: 1 MSTVKLPTSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLKSTSFKVSAMASYKVKLI 60
MSTV+LPTSCLIRNA PR+S ALVQRPSSL S R+VS AFGLKS+SFKVSAMASYKVKLI
Sbjct: 1 MSTVRLPTSCLIRNATPRKSCALVQRPSSLSSFRSVSRAFGLKSSSFKVSAMASYKVKLI 60
Query: 61 GPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120
GP+G ENEFEAPDD YILDSAE+AG+DLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDD+
Sbjct: 61 GPNGEENEFEAPDDTYILDSAESAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDQ 120
Query: 121 QMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
QMEKGYVLTCVAYPQSDCVIHTHKE DL+
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDLF 149
BLAST of Lag0029678 vs. ExPASy Swiss-Prot
Match:
P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)
HSP 1 Score: 189.9 bits (481), Expect = 2.1e-47
Identity = 99/152 (65.13%), Postives = 116/152 (76.32%), Query Frame = 0
Query: 1 MSTVKLPTSC-LIRNA-APRRSYALVQRPSSLGSVRNVSWAFGLK-STSFKVSAMASYKV 60
MST TSC L+ N + S V+ PSSL V+ LK S VSAMA YKV
Sbjct: 1 MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60
Query: 61 KLIGPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDGSFL 120
KL+GP+G E+EF+APDDAYILD+AE AGV+LPYSCRAGACSTCAG++ SG+VDQ+DGSFL
Sbjct: 61 KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120
Query: 121 DDKQMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
DD Q E+GYVLTCV+YP+SDCVIHTHKE DLY
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDLY 152
BLAST of Lag0029678 vs. ExPASy Swiss-Prot
Match:
Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)
HSP 1 Score: 184.5 bits (467), Expect = 8.8e-46
Identity = 93/155 (60.00%), Postives = 115/155 (74.19%), Query Frame = 0
Query: 1 MSTVKLP----TSCLIRNAAPRRSYALVQRPSSLGSVRNVSWAFGLK--STSFKVSAMAS 60
M+TV++ T ++R+ + S+GS + VS +FGLK + S + A
Sbjct: 1 MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60
Query: 61 YKVKLIGPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQTDG 120
YKVKL+GPDG E+EFE DD YILD+AE AGVDLPYSCRAGACSTCAGQ+VSG VDQ+DG
Sbjct: 61 YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120
Query: 121 SFLDDKQMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
SFL+D +EKGYVLTCVAYPQSDCVIHTHKE++L+
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETELF 155
BLAST of Lag0029678 vs. ExPASy Swiss-Prot
Match:
P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 2.5e-40
Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 0
Query: 53 ASYKVKLIGPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQT 112
A YKVKLIGPDG ENEF+ PDD YILD+AE AGVDLPYSCRAGACSTCAG++ G VDQ+
Sbjct: 2 AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61
Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
DGSFL+D EKGYVLTCVAYPQSD VIHTHKE +L+
Sbjct: 62 DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEELF 98
BLAST of Lag0029678 vs. ExPASy Swiss-Prot
Match:
P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)
HSP 1 Score: 166.4 bits (420), Expect = 2.5e-40
Identity = 75/97 (77.32%), Postives = 86/97 (88.66%), Query Frame = 0
Query: 53 ASYKVKLIGPDGVENEFEAPDDAYILDSAENAGVDLPYSCRAGACSTCAGQVVSGTVDQT 112
A YKVKLIGP+G ENEFE DD +ILD+AE AGVDLPYSCRAGACSTCAGQ+V G VDQ+
Sbjct: 2 AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61
Query: 113 DGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKESDLY 150
+GSFL+D EKG+VLTCVAYPQSDCVIHTHKE++L+
Sbjct: 62 EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETELF 98
BLAST of Lag0029678 vs. ExPASy Swiss-Prot
Match:
P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)
HSP 1 Score: 163.7 bits (413), Expect = 1.6e-39
Identity = 76/124 (61.29%), Postives = 101/124 (81.45%), Query Frame = 0
Query: 28 SSLGSVRNVSWAFGLKSTSFKVSAMAS--YKVKLIGPDGVENEFEAPDDAYILDSAENAG 87
S G R + A G + +S V++ A+ +KVKL+GPDG E+EFEAPDD YIL++AE AG
Sbjct: 32 SFAGHARQAARASGPRLSSRFVASAAAVLHKVKLVGPDGTEHEFEAPDDTYILEAAETAG 91
Query: 88 VDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDKQMEKGYVLTCVAYPQSDCVIHTHKE 147
V+LP+SCRAG+CSTCAG++ +G VDQ++GSFLDD QM +GY+LTC++YP++DCVIHTHKE
Sbjct: 92 VELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKE 151
Query: 148 SDLY 150
DLY
Sbjct: 152 EDLY 155
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022990479.1 | 4.2e-69 | 89.26 | ferredoxin, root R-B2-like [Cucurbita maxima] >XP_022990480.1 ferredoxin, root R... | [more] |
XP_023533022.1 | 9.3e-69 | 88.59 | ferredoxin, root R-B2-like [Cucurbita pepo subsp. pepo] | [more] |
KAG7032935.1 | 2.1e-68 | 88.59 | Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma... | [more] |
KAG6602256.1 | 2.1e-68 | 88.59 | Ferredoxin-3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022922440.1 | 2.1e-68 | 88.59 | ferredoxin, root R-B2-like [Cucurbita moschata] >XP_022922445.1 ferredoxin, root... | [more] |
Match Name | E-value | Identity | Description | |
P27788 | 2.1e-47 | 65.13 | Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1 | [more] |
Q9ZQG8 | 8.8e-46 | 60.00 | Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1 | [more] |
P14936 | 2.5e-40 | 78.35 | Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1 | [more] |
P14937 | 2.5e-40 | 77.32 | Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1 | [more] |
P94044 | 1.6e-39 | 61.29 | Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1 | [more] |