Lag0029677 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029677
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S25
Location	chr8: 41097260 .. 41098754 (+)
RNA-Seq Expression	Lag0029677
Synteny	Lag0029677

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGTTGCTATGTGCTTTTTGGTTGATTCTTCTTTATTCCAATTATTCGAGATCTTACTTACAATTCTGATTTGGTGTTTTTGAGTTCTGATGTTTGTTTTTTTTTTTTTTTTTTGTTGGTCTGGTTTGAATCGTAGGCGCCGAAGAAGGAGAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAAGCTTCTTAGAGTTAAATGCGGTCTATGGCGAGCGTTTTTTTGTTTTTCGCATAGGGTTGGACTGTAGGGCTAGCGGTTTTATTAATCTTTTTTTCGGTTTGCGGATTATGCCGATGCTTGCTTTATTATTGTCTTGCGATCGTTCAAGAATATCATTAAATAAGATTTAATCGTTTTGATTTCCATTGGTTTACTGTATTGCTTAGATGTTGTAGTGTAACCACTGTTTTTCTGAAGTTAGTTTCGTTGTATTTTATTTCGACATTGTGAAATTTGGAATCATCTCTTTTGTGATTTGGTCTTCATACATTTAGCATATTCCTTCTTCACCGTATAGAGTTCACAATACCAACCTAGGTGTTAGATTATTGACCAATCGGAGAGTGACTTTTTTATAATCGATTAGGAAGAAGGGACAAGAAAATCATTTAGTAATGATAAGACTGAAGGCCCCGAGTAATACAATGAGATGTTTTAGAATTGATGAAGTTTGTTGAATAGGGGGATCTCTATGACCGTAGCTTGGCTTTTCTTTTTGGTATTCATGGATGAAATGTTTATCCGGCTTGTGTATACTTGCTGTTTCACATGTTGTTTATCACATGCAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGACAAGCTTCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCTTCAATCCTTTCCGATAGGTTGAGGGTACGTCTATTCTGCCTTCTATCCATCCATGGTTATTGTGCACGCATACTGCAATTTGTTTGTTGTTAGATCAGAATATATTGGAAAAGAAAATAGACGTATCCTAAACTATGAACATAAGTTTTGACATGTAATGGTGATTCAACTGGTATCACCTGAGCAACCCAACTCAACCTGTGCATTCTTTGGGTTGATAATTAATTCGAAAACCCAACCCATAGATTCATGTCTACTACCAATGAGCACGAAATTCACCGTGAAGGAATCAGATTTGAAATTTAATTTATGCCCGCCCTTTTGGTTCAGCATATCTATAACTGTATTTGTGGTGGAACTTTTCGATTACCATCTACTGATACGACTTGATTTTAGTAATTCCGACAATTTACTTAATGCTCGTGTCATTTGCCATATTCAGATCAATGGATCACTAGCACGAAGAGCAATCAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCGGCACATGCCAGCCAGCAGATCTACACCAGAGCAACCAACACATAA

mRNA sequence

ATGGCGCCGAAGAAGGAGAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGACAAGCTTCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCTTCAATCCTTTCCGATAGGTTGAGGATCAATGGATCACTAGCACGAAGAGCAATCAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCGGCACATGCCAGCCAGCAGATCTACACCAGAGCAACCAACACATAA

Coding sequence (CDS)

ATGGCGCCGAAGAAGGAGAAGGCTCCTCCACCGTCCTCCAAGCCCGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGTAAGCAAAAGGAAAAGGTGAACAACATGGTTTTGTTTGATCAGGGAACTTATGACAAGCTTCTTTCTGAAGTTCCCAAGTACAAGCTAGTCACTCCTTCAATCCTTTCCGATAGGTTGAGGATCAATGGATCACTAGCACGAAGAGCAATCAAGGATTTGATGGCACGAGGTTCCATCAGAATGATCTCGGCACATGCCAGCCAGCAGATCTACACCAGAGCAACCAACACATAA

Protein sequence

MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLVTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT

Homology

[Close]

BLAST of Lag0029677 vs. NCBI nr
Match: XP_008456601.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S ribosomal protein S25-2-like [Momordica charantia] >TYK11764.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 198.7 bits (504), Expect = 2.5e-47
Identity = 106/108 (98.15%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. NCBI nr
Match: CBI18574.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 44  MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 103

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRM+SAHASQQIYTRATN
Sbjct: 104 ITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATN 150

[Close]

BLAST of Lag0029677 vs. NCBI nr
Match: GAV70343.1 (Ribosomal_S25 domain-containing protein [Cephalotus follicularis])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 105/108 (97.22%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           +TPSILSDRLRINGSLARRAI+DLMARGSIRMISAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRLRINGSLARRAIRDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. NCBI nr
Match: XP_002267311.1 (PREDICTED: 40S ribosomal protein S25 [Vitis vinifera] >RVW63871.1 40S ribosomal protein S25 [Vitis vinifera] >RVW67285.1 40S ribosomal protein S25 [Vitis vinifera])

HSP 1 Score: 198.4 bits (503), Expect = 3.2e-47
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 108
           +TPSILSDRLRINGSLARRAIKDLMARGSIRM+SAHASQQIYTRATN
Sbjct: 61  ITPSILSDRLRINGSLARRAIKDLMARGSIRMVSAHASQQIYTRATN 107

[Close]

BLAST of Lag0029677 vs. NCBI nr
Match: XP_038885543.1 (40S ribosomal protein S25 [Benincasa hispida])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 106/108 (98.15%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+KAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL
Sbjct: 1   MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAH SQQIYTRATNT
Sbjct: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHPSQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.7e-46
Identity = 97/108 (89.81%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFD+ TYDKLLSE PKYKL
Sbjct: 1   MAPKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           +TPS+LSDRLRI+GSLAR+AI+DLMARGSIRM+SAHASQQIYTRATNT
Sbjct: 61  ITPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 3.7e-46
Identity = 95/108 (87.96%), Postives = 105/108 (97.22%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM+SAH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 3.2e-45
Identity = 94/107 (87.85%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLLSE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATN 108
           +TPSILSDRLRINGSLARRAI++LMA+G+IRM+SAH+SQQIYTRAT+
Sbjct: 61  ITPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.1e-45
Identity = 93/108 (86.11%), Postives = 104/108 (96.30%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKLL+E PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRATNT 109
           +TPSILSDR+RINGSLARRAI++LMA+G IRM++AH+SQQIYTRATNT
Sbjct: 61  ITPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 174.9 bits (442), Expect = 5.0e-43
Identity = 90/106 (84.91%), Postives = 100/106 (94.34%), Query Frame = 0


Query: 1   MAPKKEKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKL 60
           MAPKK+K PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQ TYDKL+SE PK+KL
Sbjct: 1   MAPKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKL 60

Query: 61  VTPSILSDRLRINGSLARRAIKDLMARGSIRMISAHASQQIYTRAT 107
           +TPSILSDRLRINGSLAR+AI+DLM +G+IRM+S H+SQQI TRAT
Sbjct: 61  ITPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

The following BLAST results are available for this feature:

BLAST of Lag0029677 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456601.1	2.5e-47	98.15	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S r...	[more]
CBI18574.3	3.2e-47	98.13	unnamed protein product, partial [Vitis vinifera]	[more]
GAV70343.1	3.2e-47	97.22	Ribosomal_S25 domain-containing protein [Cephalotus follicularis]	[more]
XP_002267311.1	3.2e-47	98.13	PREDICTED: 40S ribosomal protein S25 [Vitis vinifera] >RVW63871.1 40S ribosomal ...	[more]
XP_038885543.1	4.2e-47	98.15	40S ribosomal protein S25 [Benincasa hispida]	[more]

BLAST of Lag0029677 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46301	1.7e-46	89.81	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9SIK2	3.7e-46	87.96	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	3.2e-45	87.85	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
Q9T029	4.1e-45	86.11	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q9SIW5	5.0e-43	84.91	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.63.20		coord: 21..108 e-value: 6.0E-41 score: 140.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF25	40S RIBOSOMAL PROTEIN S25	coord: 1..108
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..105 e-value: 1.6E-41 score: 140.6
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 1..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029677.1	Lag0029677.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome