Lag0029668 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029668
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	40S ribosomal protein S17-like
Location	chr8: 41023336 .. 41023761 (-)
RNA-Seq Expression	Lag0029668
Synteny	Lag0029668

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAAGTGATTGAGAGGTACTACTCTAAGATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCATCAAAAAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAGCGCCGTATGGACTTTGTGCCAGATGAATCAGCCATCAAGACCGACGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCCTTCGGCATGTCGGAGATTCCCGGACTTGTGGAGGTTGAGCCACAGGCTATGATTCCACCCCAAGCTTTCGGCAGGGGTGCAGGTGGCCCAAGGAGATACTAA

mRNA sequence

ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAAGTGATTGAGAGGTACTACTCTAAGATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCATCAAAAAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAGCGCCGTATGGACTTTGTGCCAGATGAATCAGCCATCAAGACCGACGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCCTTCGGCATGTCGGAGATTCCCGGACTTGTGGAGGTTGAGCCACAGGCTATGATTCCACCCCAAGCTTTCGGCAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Coding sequence (CDS)

ATGGGTCGTGTTCGCACCAAGACTGTGAAGAAGTCTTCACGCCAAGTGATTGAGAGGTACTACTCTAAGATGACACTGGATTTCCACACAAACAAGAAGATCTTGGAAGAGGTTGCCATCATCCCATCAAAAAGGCTCCGAAACAAGATTGCTGGTTTCTCAACCCACTTGATGAAGAGAATTCAGAAGGGTCCAGTCAGGGGCATCTCATTGAAGCTGCAAGAAGAAGAGCGTGAGCGCCGTATGGACTTTGTGCCAGATGAATCAGCCATCAAGACCGACGAAATTAAGGTTGACAAGGAGACACTTGATATGCTTGCTGCCTTCGGCATGTCGGAGATTCCCGGACTTGTGGAGGTTGAGCCACAGGCTATGATTCCACCCCAAGCTTTCGGCAGGGGTGCAGGTGGCCCAAGGAGATACTAA

Protein sequence

MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEVEPQAMIPPQAFGRGAGGPRRY

Homology

[Close]

BLAST of Lag0029668 vs. NCBI nr
Match: XP_038884069.1 (40S ribosomal protein S17-4 [Benincasa hispida])

HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69
Identity = 140/141 (99.29%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQ MIPPQAFGRGAGGPRRY
Sbjct: 121 EPQTMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Lag0029668 vs. NCBI nr
Match: XP_008456611.1 (PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal protein S17-3 [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAAFGMS+IPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Lag0029668 vs. NCBI nr
Match: XP_004140911.1 (40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein Csa_005187 [Cucumis sativus])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAAFGMS+IPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGAGGPRRY
Sbjct: 121 EPQAMIPPQAFGRGAGGPRRY 141

[Close]

BLAST of Lag0029668 vs. NCBI nr
Match: XP_022134321.1 (40S ribosomal protein S17-4 [Momordica charantia])

HSP 1 Score: 265.4 bits (677), Expect = 2.8e-67
Identity = 137/141 (97.16%), Postives = 139/141 (98.58%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAAFGMS+IPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAMIPPQAFGRGA GPRRY
Sbjct: 121 EPQAMIPPQAFGRGAVGPRRY 141

[Close]

BLAST of Lag0029668 vs. NCBI nr
Match: XP_022961398.1 (40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal protein S17-4 [Cucurbita maxima] >XP_023523463.1 40S ribosomal protein S17-4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 6.3e-67
Identity = 137/141 (97.16%), Postives = 138/141 (97.87%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK DEIKVDKETLDMLAAFGMS+IPGLVEV
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDEIKVDKETLDMLAAFGMSDIPGLVEV 120

Query: 121 EPQAMIPPQAFGRGAGGPRRY 142
           EPQAM P QAFGRGAGGPRRY
Sbjct: 121 EPQAMAPLQAFGRGAGGPRRY 141

[Close]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot
Match: Q9LZ17 (40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3)

HSP 1 Score: 231.5 bits (589), Expect = 5.9e-60
Identity = 124/142 (87.32%), Postives = 130/142 (91.55%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+ GMS+ PG+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG G   PRRY
Sbjct: 121 EPQQAMAPIAAFG-GGRAPRRY 141

[Close]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot
Match: P49215 (40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3)

HSP 1 Score: 228.4 bits (581), Expect = 5.0e-59
Identity = 120/139 (86.33%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVE- 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+A GMS++PG+V+ 
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQ 120

Query: 121 -VEPQAMIPPQAFGRGAGG 138
             EPQA+    ++GRG GG
Sbjct: 121 AAEPQAVAALPSYGRGGGG 139

[Close]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot
Match: Q9SJ36 (40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3)

HSP 1 Score: 226.9 bits (577), Expect = 1.5e-58
Identity = 123/142 (86.62%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+ GMS+  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           EP QAM P  AFG  A  PRRY
Sbjct: 121 EPQQAMAPIAAFGGRA--PRRY 140

[Close]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot
Match: P49205 (40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3)

HSP 1 Score: 226.5 bits (576), Expect = 1.9e-58
Identity = 122/142 (85.92%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+ GMS+  G+  V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAV 120

Query: 121 EP-QAMIPPQAFGRGAGGPRRY 142
           +P QAM P  AFG G   PRRY
Sbjct: 121 DPQQAMAPIPAFG-GGRAPRRY 141

[Close]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot
Match: Q9SQZ1 (40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 116/140 (82.86%), Postives = 127/140 (90.71%), Query Frame = 0


Query: 1   MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60
           MGRVRTKTVKKSSRQVIE+YYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR
Sbjct: 1   MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKR 60

Query: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAAFGMSEIPGLVEV 120
           IQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+ GMS+I G+ +V
Sbjct: 61  IQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQV 120

Query: 121 EPQAMIPPQAFGRGAGGPRR 141
           E Q  + P  FGR AG  +R
Sbjct: 121 ETQQAMAPAVFGRPAGRYQR 140

The following BLAST results are available for this feature:

BLAST of Lag0029668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884069.1	3.0e-69	99.29	40S ribosomal protein S17-4 [Benincasa hispida]	[more]
XP_008456611.1	1.1e-68	98.58	PREDICTED: 40S ribosomal protein S17-3 [Cucumis melo] >TYK11778.1 40S ribosomal ...	[more]
XP_004140911.1	2.6e-68	97.87	40S ribosomal protein S17-3 [Cucumis sativus] >KGN46049.1 hypothetical protein C...	[more]
XP_022134321.1	2.8e-67	97.16	40S ribosomal protein S17-4 [Momordica charantia]	[more]
XP_022961398.1	6.3e-67	97.16	40S ribosomal protein S17-4 [Cucurbita moschata] >XP_022990482.1 40S ribosomal p...	[more]

BLAST of Lag0029668 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ17	5.9e-60	87.32	40S ribosomal protein S17-4 OS=Arabidopsis thaliana OX=3702 GN=RPS17D PE=2 SV=3	[more]
P49215	5.0e-59	86.33	40S ribosomal protein S17 OS=Solanum lycopersicum OX=4081 GN=RPS17 PE=2 SV=3	[more]
Q9SJ36	1.5e-58	86.62	40S ribosomal protein S17-2 OS=Arabidopsis thaliana OX=3702 GN=RPS17B PE=2 SV=3	[more]
P49205	1.9e-58	85.92	40S ribosomal protein S17-1 OS=Arabidopsis thaliana OX=3702 GN=RPS17A PE=2 SV=3	[more]
Q9SQZ1	1.2e-57	82.86	40S ribosomal protein S17-3 OS=Arabidopsis thaliana OX=3702 GN=RPS17C PE=2 SV=3	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036401	Ribosomal protein S17e-like superfamily	GENE3D	1.10.60.20		coord: 1..62 e-value: 1.6E-32 score: 112.9
IPR036401	Ribosomal protein S17e-like superfamily	SUPERFAMILY	116820	Rps17e-like	coord: 1..62
IPR001210	Ribosomal protein S17e	PFAM	PF00833	Ribosomal_S17e	coord: 1..119 e-value: 2.4E-59 score: 198.6
IPR001210	Ribosomal protein S17e	PANTHER	PTHR10732	40S RIBOSOMAL PROTEIN S17	coord: 1..141
IPR001210	Ribosomal protein S17e	HAMAP	MF_00511	Ribosomal_S17e	coord: 1..63 score: 19.921467
None	No IPR available	PANTHER	PTHR10732:SF13	40S RIBOSOMAL PROTEIN S17-4	coord: 1..141
IPR018273	Ribosomal protein S17e, conserved site	PROSITE	PS00712	RIBOSOMAL_S17E	coord: 41..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029668.1	Lag0029668.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome