Lag0029659 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029659
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSHSP domain-containing protein
Locationchr8: 40938433 .. 40938823 (-)
RNA-Seq ExpressionLag0029659
SyntenyLag0029659
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAGTAAGATCGTGAGACGAGCTGATTGGAGAAACATTACTCAATCGAAGCAACCGTTTTCTCCAAAATTTGATTGGGAAGGAGATGACAAGAGTTGGACGTTGACCATGAAACTTGAAGGTAAAATTAACTAGATTTCCTTTATATACATGTTTAAGTGGTAAAATTAATTACTTCCCTTCATTTTATTTAGGTTTTTCAAAAGATCAAGTGCGGATCACCTTGAACGAAGGAATGAAGACTCTTTTAGTTACAGGACAAAAACAAGATGGCTTCAATGTCACTCGTTTGAATGAGCGCATACCAATTAAACCTGACTGTTCATTAAATGATGTTTCTGCAAATCTGTCCGACGAAACTCTTACGGTTACGTTCAGCAAAATATAA

mRNA sequence

ATGTCGAGTAAGATCGTGAGACGAGCTGATTGGAGAAACATTACTCAATCGAAGCAACCGTTTTCTCCAAAATTTGATTGGGAAGGAGATGACAAGAGTTGGACGTTGACCATGAAACTTGAAGGTTTTTCAAAAGATCAAGTGCGGATCACCTTGAACGAAGGAATGAAGACTCTTTTAGTTACAGGACAAAAACAAGATGGCTTCAATGTCACTCGTTTGAATGAGCGCATACCAATTAAACCTGACTGTTCATTAAATGATGTTTCTGCAAATCTGTCCGACGAAACTCTTACGGTTACGTTCAGCAAAATATAA

Coding sequence (CDS)

ATGTCGAGTAAGATCGTGAGACGAGCTGATTGGAGAAACATTACTCAATCGAAGCAACCGTTTTCTCCAAAATTTGATTGGGAAGGAGATGACAAGAGTTGGACGTTGACCATGAAACTTGAAGGTTTTTCAAAAGATCAAGTGCGGATCACCTTGAACGAAGGAATGAAGACTCTTTTAGTTACAGGACAAAAACAAGATGGCTTCAATGTCACTCGTTTGAATGAGCGCATACCAATTAAACCTGACTGTTCATTAAATGATGTTTCTGCAAATCTGTCCGACGAAACTCTTACGGTTACGTTCAGCAAAATATAA

Protein sequence

MSSKIVRRADWRNITQSKQPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQDGFNVTRLNERIPIKPDCSLNDVSANLSDETLTVTFSKI
Homology
BLAST of Lag0029659 vs. NCBI nr
Match: KAG7016359.1 (hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 1   MSSKIVRRADWRNITQSKQPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLL 60
           MSS+IV + DWR++T+S QPFSP   W  ++ S  L+MKL GF K++++ITLN   +TL 
Sbjct: 1   MSSQIVEQ-DWRDVTRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61  VTGQKQDG-FNVTRLNERIPIKPDCSLNDVSANLSDETLTVTFSK 105
           VTGQKQDG FN+ RLNERI I   CSL+ V A L D TL VTFSK
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDHTLFVTFSK 104

BLAST of Lag0029659 vs. NCBI nr
Match: XP_022939359.1 (uncharacterized protein LOC111445297 [Cucurbita moschata])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0

Query: 1   MSSKIVRRADWRNITQSKQPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLL 60
           MSS+IV + DW ++T+S QPFSP   W  ++ S  L+MKL GF K+Q++ITLN   +TL 
Sbjct: 1   MSSQIVEQ-DWGDVTRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNQLQITLNAATRTLT 60

Query: 61  VTGQKQDG-FNVTRLNERIPIKPDCSLNDVSANLSDETLTVTFSK 105
           VTGQKQDG FN+ RLNERI I   CSL+ V A L D+TL VTFSK
Sbjct: 61  VTGQKQDGLFNIIRLNERISIDDTCSLDGVFARLHDQTLFVTFSK 104

BLAST of Lag0029659 vs. NCBI nr
Match: KAE8646641.1 (hypothetical protein Csa_005322 [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-19
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 0

Query: 1   MSSKIVRRADWRN-ITQSKQPFSPKFDWEGDDK--SWTLTMKLEGFSKDQVRITLNEGMK 60
           MSS+IV + DWRN +TQ  Q F P   +E  ++   W+ +MKL GFSKD++RI LN   +
Sbjct: 44  MSSQIVNQ-DWRNVVTQQNQQFFPSITFEESEEKNKWSFSMKLPGFSKDRLRINLNTRTR 103

Query: 61  TLLVTGQKQDG-FNVTRLNERIPIKPDCSLNDVSANLSDETLTVTFSK 105
            ++VTGQK DG FN+TRLNER+ IK DC L  V A LS++TL VTF K
Sbjct: 104 IIVVTGQKSDGLFNITRLNERVTIKEDCLLEGVQAKLSNDTLIVTFEK 150

BLAST of Lag0029659 vs. NCBI nr
Match: KAG6578833.1 (Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 75.1 bits (183), Expect = 4.0e-10
Identity = 37/67 (55.22%), Postives = 50/67 (74.63%), Query Frame = 0

Query: 1  MSSKIVRRADWRNITQSKQPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLL 60
          MSS+IV + DWR++T+S QPFSP   W  ++ S  L+MKL GF K++++ITLN   +TL 
Sbjct: 1  MSSQIVEQ-DWRDVTRSDQPFSPDTKWAEEEHSRILSMKLPGFPKNRLQITLNAATRTLT 60

Query: 61 VTGQKQD 68
          VTGQKQD
Sbjct: 61 VTGQKQD 66

BLAST of Lag0029659 vs. NCBI nr
Match: KAG6602241.1 (hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 30/98 (30.61%), Postives = 61/98 (62.24%), Query Frame = 0

Query: 11  WRNITQSKQPFSPKFDW----EGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ 70
           W  + Q K+ + P  +W    E +   + + +   G S++Q++I+++  ++T+ +   K+
Sbjct: 8   WDEMDQQKENYRPNVEWKERKETNKDYFEMIIDFSGCSRNQLQISMSRELRTIDIMTTKK 67

Query: 71  DGFNVTRLNERIPIKPDCSLNDVSANLSDETLTVTFSK 105
           +G+N+ R+NE IPI+P+CSL++V A+  +  L +TF K
Sbjct: 68  EGYNIARVNETIPIRPECSLDNVYASFVNNDLIITFPK 105

BLAST of Lag0029659 vs. ExPASy Swiss-Prot
Match: D9UBX6 (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-05
Identity = 23/87 (26.44%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 19  QPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ-DGFNVTRLNER 78
           + F PK +W+   ++  L + L GF+K+Q+++T     K + VTG++       +R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEV 76

Query: 79  IPIKPDCSLNDVSANLSDETLTVTFSK 105
             +  +C ++ +  +  +  LT+T  K
Sbjct: 77  FTVPQNCLVDKIHGSFKNNVLTITMPK 103

BLAST of Lag0029659 vs. ExPASy Swiss-Prot
Match: D9UBX4 (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-05
Identity = 23/87 (26.44%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 19  QPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ-DGFNVTRLNER 78
           + F PK +W+   ++  L + L GF+K+Q+++T     K + VTG++       +R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEV 76

Query: 79  IPIKPDCSLNDVSANLSDETLTVTFSK 105
             +  +C ++ +  +  +  LT+T  K
Sbjct: 77  FTVPQNCLVDKIHGSFKNNVLTITMPK 103

BLAST of Lag0029659 vs. ExPASy Swiss-Prot
Match: Q9M670 (Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.3e-05
Identity = 23/87 (26.44%), Postives = 46/87 (52.87%), Query Frame = 0

Query: 19  QPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ-DGFNVTRLNER 78
           + F PK +W+   ++  L + L GF+K+Q+++T     K + VTG++       +R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWSRFNEV 76

Query: 79  IPIKPDCSLNDVSANLSDETLTVTFSK 105
             +  +C ++ +  +  +  LT+T  K
Sbjct: 77  FTVPQNCLVDKIHGSFKNNVLTITMPK 103

BLAST of Lag0029659 vs. ExPASy Swiss-Prot
Match: D5K211 (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-05
Identity = 23/87 (26.44%), Postives = 45/87 (51.72%), Query Frame = 0

Query: 19  QPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ-DGFNVTRLNER 78
           + F PK +W+   ++  L + L GF+K+Q+++T     K + VTG++        R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEV 76

Query: 79  IPIKPDCSLNDVSANLSDETLTVTFSK 105
             +  +C ++ +  +  +  LT+T  K
Sbjct: 77  FTVPQNCLVDKIHGSFKNNVLTITMPK 103

BLAST of Lag0029659 vs. ExPASy Swiss-Prot
Match: D9UC01 (Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 23/87 (26.44%), Postives = 44/87 (50.57%), Query Frame = 0

Query: 19  QPFSPKFDWEGDDKSWTLTMKLEGFSKDQVRITLNEGMKTLLVTGQKQ-DGFNVTRLNER 78
           + F PK +W+   ++  L + L GF+K+Q+++T     K + VTG++        R NE 
Sbjct: 17  EDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKWNRFNEV 76

Query: 79  IPIKPDCSLNDVSANLSDETLTVTFSK 105
             +  +C ++ +  +     LT+T  K
Sbjct: 77  FTVPQNCLVDKIHGSFKKNVLTITMPK 103

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7016359.11.3e-2158.10hypothetical protein SDJN02_21467 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022939359.11.7e-2158.10uncharacterized protein LOC111445297 [Cucurbita moschata][more]
KAE8646641.11.6e-1953.70hypothetical protein Csa_005322 [Cucumis sativus][more]
KAG6578833.14.0e-1055.22Chlorophyll(ide) b reductase NOL, chloroplastic, partial [Cucurbita argyrosperma... [more]
KAG6602241.11.7e-0830.61hypothetical protein SDJN03_07474, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
D9UBX65.3e-0526.44Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
D9UBX45.3e-0526.44Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
Q9M6705.3e-0526.44Protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RTM2 PE=1 S... [more]
D5K2116.9e-0526.44Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
D9UC011.2e-0426.44Inactive protein RESTRICTED TEV MOVEMENT 2 OS=Arabidopsis thaliana OX=3702 GN=RT... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008978HSP20-like chaperoneGENE3D2.60.40.790coord: 16..105
e-value: 8.6E-14
score: 53.2
IPR008978HSP20-like chaperoneSUPERFAMILY49764HSP20-like chaperonescoord: 18..104
IPR002068Alpha crystallin/Hsp20 domainPROSITEPS01031SHSPcoord: 16..105
score: 15.010228
NoneNo IPR availableCDDcd06464ACD_sHsps-likecoord: 26..104
e-value: 5.61454E-8
score: 44.4673

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029659.1Lag0029659.1mRNA