Lag0029640 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029640
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 40798886 .. 40799542 (-)
RNA-Seq Expression	Lag0029640
Synteny	Lag0029640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTACACTTTTCTACTCATGTCTTCTCTCCATCTTCACACTCCAGCTCGAGCTGCAAGAACGCTCCTCCCGTCTCCTCGTGTCGCTTCTACGTCGTCATCGTCGTATCGAGTTGATCTTCTTCATCTTCCTCTTGCAGCTCGGAAGCTCCCCGAAACGACATCGTCTACTTCCTCGAGCCTTCGCCGGATACCTCGTAGCGGCCCAAATCCTACACAGAACAGGTAATGATTCTGAATCCTAGTTTGTTTTCTGTTTTGTGTTGATGTTAAGTTCTGACTCAAAGATTCTGTGTCTCTCTTTCTTGTTTTATTTTTGGGACAGAATGAAGCCTAAGTTGAGAAGCTAAATCTCAAAGAAATCATCAAGATGAAGAAGAAGATGTTCAAAGGAATCTCAAAGGCAGCCATTGTAGTTTTCTTTTTATACTGAGAAAAAAGATTCATAGCTATAGAAATACAGTACTGACTGTTACATACATGATCTGATTAGAAAGTGGCTTCTTTCAAGAACTTCTTGTGTATGTGTAGATTCTCAATGTTAATCAACTTTTACAATTTTGATCTGTTTCTTGAAATCGAGTCGAAATTTCGAGTTATTCCGAGACAGATTCCAATTTGA

mRNA sequence

ATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTACACTTTTCTACTCATGTCTTCTCTCCATCTTCACACTCCAGCTCGAGCTGCAAGAACGCTCCTCCCGTCTCCTCGTGTCGCTTCTACGTCGTCATCGTCGTATCGAGTTGATCTTCTTCATCTTCCTCTTGCAGCTCGGAAGCTCCCCGAAACGACATCGTCTACTTCCTCGAGCCTTCGCCGGATACCTCGTAGCGGCCCAAATCCTACACAGAACAGATTCTCAATGTTAATCAACTTTTACAATTTTGATCTGTTTCTTGAAATCGAGTCGAAATTTCGAGTTATTCCGAGACAGATTCCAATTTGA

Coding sequence (CDS)

ATGAAACCTTTGATCTGCAAATCATTGGTTCCAATTCTCTACACTTTTCTACTCATGTCTTCTCTCCATCTTCACACTCCAGCTCGAGCTGCAAGAACGCTCCTCCCGTCTCCTCGTGTCGCTTCTACGTCGTCATCGTCGTATCGAGTTGATCTTCTTCATCTTCCTCTTGCAGCTCGGAAGCTCCCCGAAACGACATCGTCTACTTCCTCGAGCCTTCGCCGGATACCTCGTAGCGGCCCAAATCCTACACAGAACAGATTCTCAATGTTAATCAACTTTTACAATTTTGATCTGTTTCTTGAAATCGAGTCGAAATTTCGAGTTATTCCGAGACAGATTCCAATTTGA

Protein sequence

MKPLICKSLVPILYTFLLMSSLHLHTPARAARTLLPSPRVASTSSSSYRVDLLHLPLAARKLPETTSSTSSSLRRIPRSGPNPTQNRFSMLINFYNFDLFLEIESKFRVIPRQIPI

Homology

[Close]

BLAST of Lag0029640 vs. NCBI nr
Match: KAG7016372.1 (hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 3.5e-23
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MKPLICKSLVPILYTFLLMSSLHLHTPARAARTLLPSPRVASTSSSS-YRVDLLH-LPLA 60
          MKPLICKSLVPIL +FLLMS   L TP +AAR LLP PRVASTSSSS Y+VD+LH LPL 
Sbjct: 1  MKPLICKSLVPILCSFLLMS--FLPTPTQAARLLLPVPRVASTSSSSLYQVDVLHLLPLT 60

Query: 61 ARKLPETTSSTSSSLRRIPRSGPNPTQNR 88
          ARKL ET SSTSSSLRRIPRSGPNPTQNR
Sbjct: 61 ARKLHETASSTSSSLRRIPRSGPNPTQNR 87

[Close]

BLAST of Lag0029640 vs. NCBI nr
Match: KAG7032911.1 (hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 3.0e-22
Identity = 65/87 (74.71%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 1  MKPLICKSLVPILYTFLLMSSLHLHTPARAARTLLPSPRVASTSSSSYRVDLLHLPLAAR 60
          MKPLICKSL+PILYTFLLM  LHLHT A AARTLLP        SSS RV  LHLPL  R
Sbjct: 1  MKPLICKSLLPILYTFLLMFPLHLHTAALAARTLLP--------SSSSRVGHLHLPLTVR 60

Query: 61 KLPETTSSTSSSLRRIPRSGPNPTQNR 88
          KLPET SSTSSSLR+IP+SGPNPTQN+
Sbjct: 61 KLPETASSTSSSLRQIPKSGPNPTQNK 79

[Close]

BLAST of Lag0029640 vs. NCBI nr
Match: XP_011656590.1 (uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetical protein Csa_005020 [Cucumis sativus])

HSP 1 Score: 109.8 bits (273), Expect = 1.6e-20
Identity = 73/101 (72.28%), Postives = 78/101 (77.23%), Query Frame = 0


Query: 1   MKPLICKS-LVPILYTFLLM-SSLHLHTPARAARTLLPSP--RVAST---------SSSS 60
           MKPLI KS LVPILYTFLL+  S HLHTP +AAR LLP P   VAST         SSSS
Sbjct: 41  MKPLISKSLLVPILYTFLLLIFSFHLHTPTQAARMLLPFPGSHVASTSLPLPLSLSSSSS 100

Query: 61  YRVDLL-HLPLAARKLPETTSSTSSSLRRIPRSGPNPTQNR 88
           Y+VDLL HLP AARKL ET+SSTS+SLRRIPRSGPNPTQNR
Sbjct: 101 YQVDLLHHLPPAARKLGETSSSTSTSLRRIPRSGPNPTQNR 141

[Close]

BLAST of Lag0029640 vs. NCBI nr
Match: KAA0031696.1 (uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MKPLICKS-LVPILYTFLLM-SSLHLHTPARAARTLLPSP--RVAST-------SSSSYR 60
           MKPLI KS LVPIL+TFLL+  S HLHTP +AAR L P P   VA T       SS SY+
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPLAARKLPETTSSTSSSLRRIPRSGPNPTQNR 88
           VD L  HLP AARKL ET+SSTS+SLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

[Close]

BLAST of Lag0029640 vs. NCBI nr
Match: TYK04416.1 (uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 101.3 bits (251), Expect = 5.8e-18
Identity = 68/100 (68.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 1   MKPLICKS-LVPILYTFLLM-SSLHLHTPARAARTLLPSP--RVAST-------SSSSYR 60
           MKPLI KS LVPIL+TFLL+  S HLHTP +AAR L P P   VA T       SS SY+
Sbjct: 1   MKPLISKSLLVPILHTFLLLIFSFHLHTPTQAARMLFPFPGSHVAFTSLPLSLSSSPSYQ 60

Query: 61  VDLL--HLPLAARKLPETTSSTSSSLRRIPRSGPNPTQNR 88
           VD L  HLP AARKL ET+SSTS+SLRRIPRSGPNPTQNR
Sbjct: 61  VDFLLHHLPSAARKLGETSSSTSTSLRRIPRSGPNPTQNR 100

The following BLAST results are available for this feature:

BLAST of Lag0029640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016372.1	3.5e-23	80.90	hypothetical protein SDJN02_21480, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG7032911.1	3.0e-22	74.71	hypothetical protein SDJN02_06961 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_011656590.1	1.6e-20	72.28	uncharacterized protein LOC105435754 [Cucumis sativus] >KAE8646645.1 hypothetica...	[more]
KAA0031696.1	5.8e-18	68.00	uncharacterized protein E6C27_scaffold139G004800 [Cucumis melo var. makuwa]	[more]
TYK04416.1	5.8e-18	68.00	uncharacterized protein E5676_scaffold409G00120 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0029640 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029640.1	Lag0029640.1	mRNA