Lag0029636 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029636
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionEpidermal patterning factor-like protein
Locationchr8: 40759924 .. 40760708 (-)
RNA-Seq ExpressionLag0029636
SyntenyLag0029636
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAATTCTCTCTTGTAGCTCACACATCTCTACTTTTTGGGATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGCTGGGATCACAGTAAGAAAAATCACCATCTATGTGGTTTACATTGTCAGCTTATCTAGCTACTCTAGTTGCTGGGAAAATGCATTCATATCCCTATACTCATACATGACATTTTTCTCTGATTTAGATAGCTATGGCATCTAAGCCTTTTAAGTGTGTGATATTTCAGTGAGCTTTAATGCAGAGAATACTCACAGAACAGTTGGCAGTCCAAGGCAACACAAGGTATTATGATTTTTTCAACCCGCATTTCTCCACCTAGTCTTAAACATTTTGCGAGAAAATAAAATTAAAAGGTCGCCTAATTGGTACAAGAATAGGAAAAATATGTATCATAGATGCTTACTTGAGAGCACATTGAACAAGACAAACCATGGCAACAGGCTAACAGAAAAAAATAAATAAATAAATAAATGACTTTTTAAAGAAATTTACTGCAAAAAAAAAAAAAAAAAAAAAAAAGCATTCAGTTTCTTTGTCTTGTGTGCCTGCGCAGGAAAGAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCGTGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCCTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCACGTACCCTCCAATTGA

mRNA sequence

ATGAAGAAATTCTCTCTTGTAGCTCACACATCTCTACTTTTTGGGATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGCTGGGATCACATGAGCTTTAATGCAGAGAATACTCACAGAACAGTTGGCAGTCCAAGGCAACACAAGGAAAGAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCGTGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCCTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCACGTACCCTCCAATTGA

Coding sequence (CDS)

ATGAAGAAATTCTCTCTTGTAGCTCACACATCTCTACTTTTTGGGATTTTCTTCATCATACTAATGATTGGTAGAAGTCTTGATGCAACAACTCGCTGGGATCACATGAGCTTTAATGCAGAGAATACTCACAGAACAGTTGGCAGTCCAAGGCAACACAAGGAAAGAACTAAAGAAGTACTTGGTATGGAGTTATACCCTACAGGATCCAGCCTCCCAGACTGTTCCCATGCATGTGGACCGTGTTTTCCGTGCAAAAGGGTGATGGTGAGCTTCAAATGCTCTGTTGCAGAGTCCTGTCCAACTGTCTACAGATGCATGTGTAAAGGGAAATATTATCACGTACCCTCCAATTGA

Protein sequence

MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEVLGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Homology
[Close]
BLAST of Lag0029636 vs. NCBI nr
Match: XP_022957958.1 (protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 228.8 bits (582), Expect = 2.5e-56
Identity = 106/118 (89.83%), Postives = 111/118 (94.07%), Query Frame = 0 

Query: 1   MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEV 60
           MKKFS+VAH SLLFGIFFIILMIGRSLD TTRWDHMS+NAE+ HRT GS RQ +E+ KEV
Sbjct: 1   MKKFSIVAHMSLLFGIFFIILMIGRSLDVTTRWDHMSYNAEDAHRTDGSLRQEEEKAKEV 60

Query: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 119
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]
BLAST of Lag0029636 vs. NCBI nr
Match: XP_038885051.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Benincasa hispida])

HSP 1 Score: 224.2 bits (570), Expect = 6.0e-55
Identity = 103/118 (87.29%), Postives = 110/118 (93.22%), Query Frame = 0 

Query: 1   MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEV 60
           MK F LVAHTS+LFGIFFIILM GRSLDATTRWDHMSFNAE+THR V + R  +E+T+EV
Sbjct: 1   MKSFPLVAHTSILFGIFFIILMNGRSLDATTRWDHMSFNAEDTHRAVDNSRHEQEKTEEV 60

Query: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 119
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVY+CMCKGKYYHVPSN
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYKCMCKGKYYHVPSN 118

[Close]
BLAST of Lag0029636 vs. NCBI nr
Match: XP_008456675.1 (PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 105/118 (88.98%), Postives = 110/118 (93.22%), Query Frame = 0 

Query: 1   MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEV 60
           MK+F LVAH SLLFGIFFIILMIGRSLDA  RWDHMSFNAE+THRTV + R  +E+TKEV
Sbjct: 1   MKRFPLVAHISLLFGIFFIILMIGRSLDA-ARWDHMSFNAEDTHRTVNNSRNQQEKTKEV 60

Query: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 119
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 117

[Close]
BLAST of Lag0029636 vs. NCBI nr
Match: XP_022990492.1 (protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima])

HSP 1 Score: 221.1 bits (562), Expect = 5.1e-54
Identity = 103/118 (87.29%), Postives = 109/118 (92.37%), Query Frame = 0 

Query: 1   MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEV 60
           MKKFS+VAH SLL GIFFIILMIGRSLD TT WD+MSF+AE+ HRT GS RQ +E+ KEV
Sbjct: 1   MKKFSIVAHMSLLLGIFFIILMIGRSLDVTTHWDNMSFSAEDAHRTDGSLRQEEEKAKEV 60

Query: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 119
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]
BLAST of Lag0029636 vs. NCBI nr
Match: XP_022134337.1 (protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia])

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 0 

Query: 1   MKKFSLVAHTSLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEV 60
           MKK SLVAH S +F +FFIILMIGRSLDAT+RW+HMSFNAE+ HRTV S    KER KEV
Sbjct: 1   MKKCSLVAHLSFIFVVFFIILMIGRSLDATSRWEHMSFNAEDIHRTVDSSMHQKERAKEV 60

Query: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 119
           LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN
Sbjct: 61  LGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPSN 118

[Close]
BLAST of Lag0029636 vs. ExPASy Swiss-Prot
Match: Q8LC53 (Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-22
Identity = 43/55 (78.18%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 63  MELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 118
           ME+YPTGSSLPDCS+ACG C PCKRVM+SF+CSVAESC  +YRC C+G+YYHVPS
Sbjct: 64  MEMYPTGSSLPDCSYACGACSPCKRVMISFECSVAESCSVIYRCTCRGRYYHVPS 118

[Close]
BLAST of Lag0029636 vs. ExPASy Swiss-Prot
Match: C4B8C5 (EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EPFL7 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-17
Identity = 35/50 (70.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 68  TGSSLPDCSHACGPCFPCKRVMVSFKCSVAESCPTVYRCMCKGKYYHVPS 118
           +GSS+PDCS+ACGPC PCK V++S  CS +E+CP VY+C+CKGKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170

[Close]
BLAST of Lag0029636 vs. ExPASy Swiss-Prot
Match: Q8S8I4 (Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.5e-13
Identity = 44/109 (40.37%), Postives = 58/109 (53.21%), Query Frame = 0 

Query: 11  SLLFGIFFIILMIGRSLDATTRWDHMSFNAENTHRTVGSPRQHKERTKEVLGMELYPTGS 70
           SLL   FF+    G  L       H+  ++  +H  VG     K + +    +++   GS
Sbjct: 3   SLLLLAFFLSFFFGSLLAR-----HLPTSSHPSHHHVGMTGALKRQRRRPDTVQV--AGS 62

Query: 71  SLPDCSHACGPCFPCKRVMVSFKCS---VAESCPTVYRCMCKGKYYHVP 117
            LPDCSHACG C PC+ VMVSF C+    AE+CP  Y+CMC  K Y VP
Sbjct: 63  RLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104

The following BLAST results are available for this feature:
BLAST of Lag0029636 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022957958.12.5e-5689.83protein EPIDERMAL PATTERNING FACTOR 1-like [Cucurbita moschata] >XP_023518828.1 ... [more]
XP_038885051.16.0e-5587.29protein EPIDERMAL PATTERNING FACTOR 2-like [Benincasa hispida][more]
XP_008456675.11.8e-5488.98PREDICTED: protein EPIDERMAL PATTERNING FACTOR 1 [Cucumis melo][more]
XP_022990492.15.1e-5487.29protein EPIDERMAL PATTERNING FACTOR 1 [Cucurbita maxima][more]
XP_022134337.12.5e-5386.44protein EPIDERMAL PATTERNING FACTOR 2-like [Momordica charantia][more]
BLAST of Lag0029636 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8LC531.1e-2278.18Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana OX=3702 GN=EPF2 PE... [more]
C4B8C51.4e-1770.00EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=EP... [more]
Q8S8I44.5e-1340.37Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=EPF1 PE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF17181EPFcoord: 68..115
e-value: 1.1E-14
score: 54.1
NoneNo IPR availablePANTHERPTHR33109:SF6EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 7coord: 5..117
IPR039455EPIDERMAL PATTERNING FACTOR-like proteinPANTHERPTHR33109EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4coord: 5..117

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029636.1Lag0029636.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010052 guard cell differentiation
biological_process GO:0010374 stomatal complex development
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane