Lag0029622 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029622
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	17.6 kDa class I heat shock protein-like
Location	chr8: 40649001 .. 40649776 (-)
RNA-Seq Expression	Lag0029622
Synteny	Lag0029622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGTCGTTGGGGCCGTGGTTGGGCGGCGGAGATCGAGATTCGTGGTGCGGCTCGGGCTCCGACGTGATGGATCCTTTAGGAATCTGGCGGGGAGCCGCCGCACGCGGCGGCGATGAAGTGTTTGTAATTGCCAGTGCCAACGTGGACTGGCACGAAACTGAGAACTCTCATATTTTTACGGTTGATCTTCCTGGTCAACCCTCTCTTTTCGTGTTGGCACCTCGATTTAGTGCATGTTTGGGAATGATTTTAAAATGGTTAAAATCACTTTTGTAATATTTAAAATCATTGAAACATGTCAAAATACACCATTTTTCGATCTCATTTTTTATGACGGTCGACGCTTTTTTTCTAAAATTAAACATCTTGAAAAGTTAAACCAATCACACCCTTAATCATTCAAAATCAATTTGTTATTTTATTTTATACTTTCAAATGATTTTCACACCATAATTCATGTTTAGGGTGATTTTGAAAATTACAAAATAAATTAAAATCAATATATAATTGGCTTGGCTCATCGAATGAATAAGGATTCGATAGATGAAACTGAAACCGACCTGCTAACACTCTCGATAACCATTTTCAAAATAGGCTGCGGAATCGCATTATGCGCCATAATTTCACCGGCGTGCGAGTTCGCCATGGCTATACTCACAAAGTTAAGAGGCTGCCCTAACCCTAACCCTAACAATAAAATTGGGTGCAGGAGTGAGGAAAGAGGACCTGAAGGTGCAGGTGGAAGACGGCAGAGTCCTGGAGATCAGCGGTGA

mRNA sequence

ATGACGTCGTTGGGGCCGTGGTTGGGCGGCGGAGATCGAGATTCGTGGTGCGGCTCGGGCTCCGACGTGATGGATCCTTTAGGAATCTGGCGGGGAGCCGCCGCACGCGGCGGCGATGAAGTGTTTGTAATTGCCAGTGCCAACGTGGACTGGCACGAAACTGAGAACTCTCATATTTTTACGGTTGATCTTCCTGGTCAACCCTCTCTTTTCGTGTTGGCACCTCGATTTAGTGCATGCTGCGGAATCGCATTATGCGCCATAATTTCACCGGCGTGCGAGTTCGCCATGGCTATACTCACAAAGTTAAGAGGCTGCCCTAACCCTAACCCTAACAATAAAATTGGGTGCAGGAGTGAGGAAAGAGGACCTGAAGGTGCAGGTGGAAGACGGCAGAGTCCTGGAGATCAGCGGTGA

Coding sequence (CDS)

ATGACGTCGTTGGGGCCGTGGTTGGGCGGCGGAGATCGAGATTCGTGGTGCGGCTCGGGCTCCGACGTGATGGATCCTTTAGGAATCTGGCGGGGAGCCGCCGCACGCGGCGGCGATGAAGTGTTTGTAATTGCCAGTGCCAACGTGGACTGGCACGAAACTGAGAACTCTCATATTTTTACGGTTGATCTTCCTGGTCAACCCTCTCTTTTCGTGTTGGCACCTCGATTTAGTGCATGCTGCGGAATCGCATTATGCGCCATAATTTCACCGGCGTGCGAGTTCGCCATGGCTATACTCACAAAGTTAAGAGGCTGCCCTAACCCTAACCCTAACAATAAAATTGGGTGCAGGAGTGAGGAAAGAGGACCTGAAGGTGCAGGTGGAAGACGGCAGAGTCCTGGAGATCAGCGGTGA

Protein sequence

MTSLGPWLGGGDRDSWCGSGSDVMDPLGIWRGAAARGGDEVFVIASANVDWHETENSHIFTVDLPGQPSLFVLAPRFSACCGIALCAIISPACEFAMAILTKLRGCPNPNPNNKIGCRSEERGPEGAGGRRQSPGDQR

Homology

[Close]

BLAST of Lag0029622 vs. NCBI nr
Match: XP_009599116.1 (16.9 kDa class I heat shock protein 1-like [Nicotiana tomentosiformis] >XP_016471458.1 PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana tabacum])

HSP 1 Score: 69.3 bits (168), Expect = 2.9e-08
Identity = 35/71 (49.30%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 2  TSLGPWLGGGDRDSW-----CGSGSDVMDPLGIWRGAAARGG-DEVFVIASANVDWHETE 61
          +S+GPW+GGG R  W         SD+ DP  I      RGG D+V  +A ANVDW ET+
Sbjct: 3  SSIGPWMGGGRRRDWDVGFSSPFASDIWDPFNIGGLGWRRGGEDDVSALAHANVDWRETD 62

Query: 62 NSHIFTVDLPG 67
          N+H F VDLPG
Sbjct: 63 NAHFFRVDLPG 73

[Close]

BLAST of Lag0029622 vs. NCBI nr
Match: XP_019242266.1 (PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana attenuata] >XP_019261733.1 PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana attenuata] >OIT18738.1 16.9 kda class i heat shock protein 1 [Nicotiana attenuata] >OIT38296.1 16.9 kda class i heat shock protein 1 [Nicotiana attenuata])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 2  TSLGPWLGGGDRDSW-----CGSGSDV-MDPLGIWRGAAARGG--DEVFVIASANVDWHE 61
          +S+GPW+GGG R  W         SD+ +DP  I      RGG  D+V  +A ANVDW E
Sbjct: 3  SSIGPWMGGGRRRDWDVGFSSPFSSDILLDPFDIGGLGWRRGGGEDDVSALAHANVDWRE 62

Query: 62 TENSHIFTVDLPG 67
          T+N+HIF VDLPG
Sbjct: 63 TDNAHIFRVDLPG 75

[Close]

BLAST of Lag0029622 vs. NCBI nr
Match: XP_009795364.1 (PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana sylvestris])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 2  TSLGPWLGGGDRDSW-----CGSGSDV-MDPLGIWRGAAARGG--DEVFVIASANVDWHE 61
          +S+GPW+GGG R  W         SD+ +DP  I      RGG  D+V  +A ANVDW E
Sbjct: 3  SSIGPWMGGGRRRDWDVGFSSPFSSDILLDPFDIGGLGWRRGGGEDDVSALAHANVDWRE 62

Query: 62 TENSHIFTVDLPG 67
          T+N+HIF VDLPG
Sbjct: 63 TDNAHIFRVDLPG 75

[Close]

BLAST of Lag0029622 vs. NCBI nr
Match: XP_016488118.1 (PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana tabacum])

HSP 1 Score: 66.6 bits (161), Expect = 1.9e-07
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 2  TSLGPWLGGGDRDSW-----CGSGSDV-MDPLGIWRGAAARGG--DEVFVIASANVDWHE 61
          +S+GPW+GGG R  W         SD+ +DP  I      RGG  D+V  +A ANVDW E
Sbjct: 3  SSIGPWMGGGRRRDWDVGFSSPFSSDILLDPFDIGGLGWRRGGGEDDVSALAHANVDWRE 62

Query: 62 TENSHIFTVDLPG 67
          T+N+HIF VDLPG
Sbjct: 63 TDNAHIFRVDLPG 75

[Close]

BLAST of Lag0029622 vs. NCBI nr
Match: XP_021820489.1 (17.6 kDa class I heat shock protein-like [Prunus avium])

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0


Query: 4  LGPWLGGGDRDSWCGS--GSDVMDPLGIWRGAA----ARGGDEVFVIASANVDWHETENS 63
          LGPW GG     W     GS+V DP G+  G +      GGDE   +A+A+VDW ET+N+
Sbjct: 2  LGPWRGGRRGGGWIEPWFGSEVWDPFGLGLGISDWEQQGGGDETSAVANAHVDWRETDNA 61

Query: 64 HIFTVDLPG 67
          HIF  DLPG
Sbjct: 62 HIFVADLPG 70

The following BLAST results are available for this feature:

BLAST of Lag0029622 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_009599116.1	2.9e-08	49.30	16.9 kDa class I heat shock protein 1-like [Nicotiana tomentosiformis] >XP_01647...	[more]
XP_019242266.1	1.9e-07	49.32	PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana attenuata] >XP_...	[more]
XP_009795364.1	1.9e-07	49.32	PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana sylvestris]	[more]
XP_016488118.1	1.9e-07	49.32	PREDICTED: 16.9 kDa class I heat shock protein 1-like [Nicotiana tabacum]	[more]
XP_021820489.1	4.2e-07	47.83	17.6 kDa class I heat shock protein-like [Prunus avium]	[more]

BLAST of Lag0029622 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029622.1	Lag0029622.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006950	response to stress