Lag0029608 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029608
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 40534951 .. 40535382 (+)
RNA-Seq Expression	Lag0029608
Synteny	Lag0029608

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGCAACTGCAAATGATGCATCCCTCACAAGGCACAGCTCAGGTTGGCATGGCTGGTGTGAGCCTTCTCTTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGTCCGGAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTGAACCAAGAAGCAACGGTTGTGACCACGCACCGAGCGAACGCCTGTGTTGTGAATGCCACTGAGCCAGAGAATGTCAACGATGAAATGTTCTTCAGCAGAGAGCAACAAGCTGCGGTGTGGCAGAAGAACATACTCATGGGTGGGAAGTGCCAGCTACCGGACTTCTCGGGCGTCATATTATACGACCCCAATGGAAATGTCGTGACCCCGGCCAAAACCCCACGTCCTTTACTCACCTGGAAGTGA

mRNA sequence

ATGGCAAGGCAACTGCAAATGATGCATCCCTCACAAGGCACAGCTCAGGTTGGCATGGCTGGTGTGAGCCTTCTCTTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGTCCGGAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTGAACCAAGAAGCAACGGTTGTGACCACGCACCGAGCGAACGCCTGTGTTGTGAATGCCACTGAGCCAGAGAATGTCAACGATGAAATGTTCTTCAGCAGAGAGCAACAAGCTGCGGTGTGGCAGAAGAACATACTCATGGGTGGGAAGTGCCAGCTACCGGACTTCTCGGGCGTCATATTATACGACCCCAATGGAAATGTCGTGACCCCGGCCAAAACCCCACGTCCTTTACTCACCTGGAAGTGA

Coding sequence (CDS)

ATGGCAAGGCAACTGCAAATGATGCATCCCTCACAAGGCACAGCTCAGGTTGGCATGGCTGGTGTGAGCCTTCTCTTGTGTGCTTTTGCATTGTTCATGTGTGCTTCCCATGTCCGGAAATGGCGCCGTCGTTGGAATGCTTGCTTGGATTATGGCTACGAGTTTGAGGATCCTGTAATAGAGCTGAACCAAGAAGCAACGGTTGTGACCACGCACCGAGCGAACGCCTGTGTTGTGAATGCCACTGAGCCAGAGAATGTCAACGATGAAATGTTCTTCAGCAGAGAGCAACAAGCTGCGGTGTGGCAGAAGAACATACTCATGGGTGGGAAGTGCCAGCTACCGGACTTCTCGGGCGTCATATTATACGACCCCAATGGAAATGTCGTGACCCCGGCCAAAACCCCACGTCCTTTACTCACCTGGAAGTGA

Protein sequence

MARQLQMMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPVIELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGVILYDPNGNVVTPAKTPRPLLTWK

Homology

[Close]

BLAST of Lag0029608 vs. NCBI nr
Match: XP_038886392.1 (uncharacterized protein LOC120076591 [Benincasa hispida])

HSP 1 Score: 288.1 bits (736), Expect = 4.1e-74
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MARQLQMMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPVI 60
           MARQLQMMHPSQ TAQVGMAGVSLLLCAFALFMCASH RKWRRRWNACLDYGYEFEDPVI
Sbjct: 57  MARQLQMMHPSQATAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 116

Query: 61  ELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGV 120
           ELNQEATV+TT R NACVVNATE ENVNDEMFFSREQQAA+WQKNILMGGKCQLPDFSGV
Sbjct: 117 ELNQEATVMTTQRVNACVVNATESENVNDEMFFSREQQAAIWQKNILMGGKCQLPDFSGV 176

Query: 121 ILYDPNGNVVTPAKTPRPLLTWK 144
           ILYDPNGN VTPAKTPRPLLTWK
Sbjct: 177 ILYDPNGNAVTPAKTPRPLLTWK 199

[Close]

BLAST of Lag0029608 vs. NCBI nr
Match: XP_023512486.1 (uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo] >KAG6602206.1 hypothetical protein SDJN03_07439, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032888.1 hypothetical protein SDJN02_06938, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 268.1 bits (684), Expect = 4.4e-68
Identity = 129/144 (89.58%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MARQLQ-MMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPV 60
           MARQLQ MMH SQ TAQVGMAG SLLLCAFALFMCASH RKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSG 120
           IELNQEATVVTT R N CVVNATEPEN NDEMFFSREQ+AAVW+KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNTCVVNATEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120

Query: 121 VILYDPNGNVVTPAKTPRPLLTWK 144
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDSNGNVVTPARTQLPLLTWK 144

[Close]

BLAST of Lag0029608 vs. NCBI nr
Match: XP_022990795.1 (uncharacterized protein LOC111487577 [Cucurbita maxima])

HSP 1 Score: 266.2 bits (679), Expect = 1.7e-67
Identity = 128/144 (88.89%), Postives = 131/144 (90.97%), Query Frame = 0


Query: 1   MARQLQ-MMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPV 60
           MARQLQ MMH SQ TAQVGMAG SLLLCAFALFMCASH RKWRRRWNACLDYGYEFEDPV
Sbjct: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSG 120
           IELNQEATVVTT R N CVVNATEPEN NDEMFFSREQ+A VW+KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNTCVVNATEPENDNDEMFFSREQRATVWEKNILMGGKCQLPDFSG 120

Query: 121 VILYDPNGNVVTPAKTPRPLLTWK 144
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDSNGNVVTPARTQFPLLTWK 144

[Close]

BLAST of Lag0029608 vs. NCBI nr
Match: XP_011656615.1 (uncharacterized protein LOC105435757 [Cucumis sativus] >KGN46105.1 hypothetical protein Csa_004865 [Cucumis sativus])

HSP 1 Score: 265.4 bits (677), Expect = 2.9e-67
Identity = 127/143 (88.81%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MARQLQMMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPVI 60
           MARQLQ++H SQGTAQVGMAGVSLLLCAFALFMCASH RKWRRRWNACLDYGYEFEDPVI
Sbjct: 1   MARQLQIIHSSQGTAQVGMAGVSLLLCAFALFMCASHARKWRRRWNACLDYGYEFEDPVI 60

Query: 61  ELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSGV 120
           ELNQEATVVTT R     VN TEPEN NDEMFFSREQQA++W KNILMGGKCQLPDFSGV
Sbjct: 61  ELNQEATVVTTQR-----VNTTEPENGNDEMFFSREQQASMWHKNILMGGKCQLPDFSGV 120

Query: 121 ILYDPNGNVVTPAKTPRPLLTWK 144
           ILYDPNGN VTPAKTPRPLLTWK
Sbjct: 121 ILYDPNGNAVTPAKTPRPLLTWK 138

[Close]

BLAST of Lag0029608 vs. NCBI nr
Match: XP_022959632.1 (uncharacterized protein LOC111460648 [Cucurbita moschata])

HSP 1 Score: 263.8 bits (673), Expect = 8.3e-67
Identity = 127/144 (88.19%), Postives = 130/144 (90.28%), Query Frame = 0


Query: 1   MARQLQ-MMHPSQGTAQVGMAGVSLLLCAFALFMCASHVRKWRRRWNACLDYGYEFEDPV 60
           MARQLQ MMH SQ TAQVGMAG SLLLCAFALFMCASH RKWR RWNACLDYGYEFEDPV
Sbjct: 1   MARQLQMMMHSSQATAQVGMAGASLLLCAFALFMCASHARKWRHRWNACLDYGYEFEDPV 60

Query: 61  IELNQEATVVTTHRANACVVNATEPENVNDEMFFSREQQAAVWQKNILMGGKCQLPDFSG 120
           IELNQEATVVTT R N CVVNA EPEN NDEMFFSREQ+AAVW+KNILMGGKCQLPDFSG
Sbjct: 61  IELNQEATVVTTQRVNTCVVNAPEPENGNDEMFFSREQRAAVWEKNILMGGKCQLPDFSG 120

Query: 121 VILYDPNGNVVTPAKTPRPLLTWK 144
           VILYD NGNVVTPA+T  PLLTWK
Sbjct: 121 VILYDSNGNVVTPARTQLPLLTWK 144

The following BLAST results are available for this feature:

BLAST of Lag0029608 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886392.1	4.1e-74	94.41	uncharacterized protein LOC120076591 [Benincasa hispida]	[more]
XP_023512486.1	4.4e-68	89.58	uncharacterized protein LOC111777221 [Cucurbita pepo subsp. pepo] >KAG6602206.1 ...	[more]
XP_022990795.1	1.7e-67	88.89	uncharacterized protein LOC111487577 [Cucurbita maxima]	[more]
XP_011656615.1	2.9e-67	88.81	uncharacterized protein LOC105435757 [Cucumis sativus] >KGN46105.1 hypothetical ...	[more]
XP_022959632.1	8.3e-67	88.19	uncharacterized protein LOC111460648 [Cucurbita moschata]	[more]

BLAST of Lag0029608 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33237	F2P16.13 PROTEIN-RELATED	coord: 1..143
None	No IPR available	PANTHER	PTHR33237:SF4	F14O23.12	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029608.1	Lag0029608.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane