Lag0029547 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029547
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionribonuclease P protein subunit p38
Locationchr8: 39951920 .. 39954259 (+)
RNA-Seq ExpressionLag0029547
SyntenyLag0029547
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAAGAAGGCTAAATCTTCTGCTTCTGTTCAATCCAAGCCTGACCCATAGTAAGCCTCCTTTTCTTACTCACTTTCATTCTGTTCGGACCTTCCTCCGTCTCTTCTCCATTCGATTTCTTACCTGAATCTTTTTGTTTTAACTTGAAATTGATTGCGTTTTTGGAATTTGATCAACGCAGTTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAGTCGATTCAGAGGTAAACGAGACTCAATTTGTCTAATAATGCACTTCAAGCCACCAGTAACTGATCGTTGTGTTTAACAGGGAGATAAAGCGAGCAAGAGTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGGTTTTTATTTTTTTGTTTTTTTGTTTCAATGATGTCCTTTCGTATTTTCAACGTCTTTAGTTTCTTCTTGCAAGTCATTTCAATAATGTTTCTTGTTTCTAAGTTACAGAAGCAAAAATTTAATTTATCGTTCTTTTTATAAGCTACTTATGTTGAGTGATGGGTTTCTTCTTAGAAACAATTCGCAGTTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGAAGCCAAGTGGAGATTCTGCTAGCATAACGAACCCTAATTATAAGGCGTGTACAGTCAAGCTTCAGGTTAGTCTACTCTTATGTTTATATTGGGCAATACTATCTAGGGTTTAGGAATTAGCGGTAGTAGAGTAGTGAAACTATACTGCCGAATGCTTAATATTGATAGAATCCCCAGCTTTACCCTTCTAGGGTCGTGTTGTTGCAGTTCACTTTATTATTTCTGGTGGATTGATGGACCCTTTCATTAACTCGAAGTCATAAGTATTACTTTCTACGGTATGCTTAGAAGCGAAGATGAAGTCCATGGATGAGCCCTCCCATGAGTCTTTTTGGATTAGGCATTGGTGTATATAGTTCAGACCTGCCACTTGAGAAACAAGATATCTCGTAGAGTTAGTAACTTCTATCCTAGTTTGTGGCCTAAAGAAATGTACTTATCCGTCCAAAGTGTCCAATTCATCCATTTGAGAGTTACTTGAAGCAAACAATAGTTTCTTTTGAGAGAAACACTTCTGCTGTGGAAAACTCTTGCTGATTCTCATGTTGATGGCAACTATACTAACACTGCCTAAAGCCCTGCCCCTCATCATCTTCATATAGTTTTCTATGGTGTCAAAGGGTATCAACAAAGCCCTTGGTGTAGTTGGCACGGTTACATGCCTTCTTGGGAGTATGCTACATGATTGGTATAGCCCATGAGATGTGCTTAACCATATCCTACAGAATGTTATTTTTGAAGTAATCCATTTCAATTTTTGGTGCCAATATAAATCAAATATAGTGGCCATTATGTAGTGTTTCTTATGTAGCGAGAATTTGGTTGAGGCTTAGAGCTCCTATTGGTAAGTGGACTATTTCCTCCCTTGTAGGCTTAGTTTCTCACTAAAATATTCCATAGCCTTAACATTTTGAGATAGGACTGCTCCTATCCTTTGCAGAAACATCCATCTCGACTTCAAAGAGGATGCCAAATTTTGGCAAGGCCAAGGTGGCTGCAAATATCTATTTTCTTTGAGTGTTTGGCGGCCTATTTTTTTAATCCCAAGATACTTTGAACGTACCCAACAAAGGGAAAAGGATGTTAATTTCATTAACTTCAAACATCTTTTGCAACGTTTGGCGTGGGATAAGATGTATGTTTATTCCCACGATGGATCCTAAGAATAACCGTTTTAATTGTAAGAGATATGCACTTAGAGATATTAAAGAAAAAGCTTAGTGGATTTTGGAGCAGTAAAAATTTCCTATAGATACTATAATGTGTCTTGTGTTGGCTGACTTAGTTTGTCATCCAAGTAGATGACATTATTCCACTCTCTCAAGTGTTAATTGAACACAACCGATCGTGCATTGCCTACTGTCTTTCGGTATACGGTGTCTAATTACTTGGCTTTCATCTTTTATTATGTAGGCTATACTGTTAACTGCTGATTGCAACCCTCTATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGGTAAAGAAGGATCTTTAAGGTTAGGTCAACTCGTCAACCTTAAAACAGCAATTGCAATTGGAATAAAGGTGAGGAGGAAATATTAGACAATGAACTGCCTTTAAAGGTCTACGTTTCTTGTGTTCTGTTGAACCTTTTCAAAAAACTATTATTGACAAAGTTACATGTTTGCAAACGAATTGCAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAACGAACAAGATAG

mRNA sequence

ATGGGAAAGAAGGCTAAATCTTCTGCTTCTGTTCAATCCAAGCCTGACCCATATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAGTCGATTCAGAGGGAGATAAAGCGAGCAAGAGTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTCGCAGTTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGAAGCCAAGTGGAGATTCTGCTAGCATAACGAACCCTAATTATAAGGCGTGTACAGTCAAGCTTCAGGCTATACTGTTAACTGCTGATTGCAACCCTCTATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGGTAAAGAAGGATCTTTAAGGTTAGGTCAACTCGTCAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAACGAACAAGATAG

Coding sequence (CDS)

ATGGGAAAGAAGGCTAAATCTTCTGCTTCTGTTCAATCCAAGCCTGACCCATATTCCTATGAAGGGGAACGTCTCGATGAGTTGCTACAGTCGATTCAGAGGGAGATAAAGCGAGCAAGAGTTCTGAATGCGGAATCCTTGCCGGAAAAAATTTGGCTCAAGAAACAATTCGCAGTTGGAGTTAATGAGGTTACTAGAGTCCTTGAACGGATGAAGCCAAGTGGAGATTCTGCTAGCATAACGAACCCTAATTATAAGGCGTGTACAGTCAAGCTTCAGGCTATACTGTTAACTGCTGATTGCAACCCTCTATGGCTGACAAACCATGTGCCAAGCTTGGCCATATCTAGGAAGGTACCATTGATACTCGTGAAAGGTAAAGAAGGATCTTTAAGGTTAGGTCAACTCGTCAACCTTAAAACAGCAATTGCAATTGGAATAAAGGCGAATGGGAGCCCTGTTAATCAACTTATTGGTGAAATTCTTCAACGAACAAGATAG

Protein sequence

MGKKAKSSASVQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQFAVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISRKVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQRTR
Homology
BLAST of Lag0029547 vs. NCBI nr
Match: XP_022938626.1 (ribonuclease P protein subunit p38 [Cucurbita moschata])

HSP 1 Score: 283.5 bits (724), Expect = 1.2e-72
Identity = 151/168 (89.88%), Postives = 155/168 (92.26%), Query Frame = 0

Query: 1   MGKKAKSS---ASVQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQF 60
           MGKKAKSS   A VQSK +  SYEGERLDELLQSIQREIKRAR LNAESLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISR 120
           A+GVNEVTRVLERM PSGDSA I NPNYKACTV+LQAILLTADCNP WLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQRT 166
           KVPLILVK KEGSLRLG+LVNLKTAIAIGIKANGSPVNQLIGEILQRT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT 168

BLAST of Lag0029547 vs. NCBI nr
Match: KAG6579150.1 (hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016668.1 hypothetical protein SDJN02_21778 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 280.4 bits (716), Expect = 1.0e-71
Identity = 150/168 (89.29%), Postives = 154/168 (91.67%), Query Frame = 0

Query: 1   MGKKAKSS---ASVQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQF 60
           MGKKAKSS   A VQSK +  SYEGERLDELLQSIQREIKRAR LNAESLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAESLPEKIWLKKQF 60

Query: 61  AVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISR 120
           A+GVNEVTRVLERM PS DSA I NPNYKACTV+LQAILLTADCNP WLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQRT 166
           KVPLILVK KEGSLRLG+LVNLKTAIAIGIKANGSPVNQLIGEILQRT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIGEILQRT 168

BLAST of Lag0029547 vs. NCBI nr
Match: XP_023549838.1 (ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 2.9e-71
Identity = 148/168 (88.10%), Postives = 154/168 (91.67%), Query Frame = 0

Query: 1   MGKKAKSS---ASVQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQF 60
           MGKKAKSS   A VQSK +  SYEGERLDELLQSIQREIKRAR LNAE+LPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARCLNAETLPEKIWLKKQF 60

Query: 61  AVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISR 120
           A+GVNEVTRVLERM PS DSA I NPNYKACTV+LQAILLTADCNP WLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARIVNPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQRT 166
           KVPLILVK KEGSLRLG+LVNLKTAIAIGIKANGSP+NQLIGEILQRT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPINQLIGEILQRT 168

BLAST of Lag0029547 vs. NCBI nr
Match: XP_038875290.1 (ribonuclease P protein subunit p38 [Benincasa hispida])

HSP 1 Score: 275.0 bits (702), Expect = 4.2e-70
Identity = 145/167 (86.83%), Postives = 152/167 (91.02%), Query Frame = 0

Query: 1   MGKKAKSSAS---VQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQF 60
           MGKKAKSSA    +QSKP+  SYEGERLDE LQSIQREIK AR LNAESLPEKIWLKKQF
Sbjct: 1   MGKKAKSSAPDAVLQSKPNEDSYEGERLDEFLQSIQREIKTARFLNAESLPEKIWLKKQF 60

Query: 61  AVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISR 120
           A+GVNEVTRVLERM PSGDSA I NPNYKACTVKLQA+LLTA+CNP WLTNHVPSLA+SR
Sbjct: 61  AIGVNEVTRVLERMTPSGDSARIMNPNYKACTVKLQAVLLTANCNPRWLTNHVPSLAMSR 120

Query: 121 KVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQR 165
           KVPLILVK KEGSLRLG+LVNLKTAIAIGIKANGSPVNQLI EILQR
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKANGSPVNQLIDEILQR 167

BLAST of Lag0029547 vs. NCBI nr
Match: XP_022993803.1 (ribonuclease P protein subunit p38 [Cucurbita maxima])

HSP 1 Score: 269.2 bits (687), Expect = 2.3e-68
Identity = 146/168 (86.90%), Postives = 152/168 (90.48%), Query Frame = 0

Query: 1   MGKKAKSS---ASVQSKPDPYSYEGERLDELLQSIQREIKRARVLNAESLPEKIWLKKQF 60
           MGKKAKSS   A VQSK +  SYEGERLDELLQSIQREIKRAR LNA+SLPEKIWLKKQF
Sbjct: 1   MGKKAKSSGPVAVVQSKRNEDSYEGERLDELLQSIQREIKRARFLNADSLPEKIWLKKQF 60

Query: 61  AVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPSLAISR 120
           A+GVNEVTRVLERM PS DSA + NPNYKACTV+LQAILLTADCNP WLTNHVPSLAISR
Sbjct: 61  AIGVNEVTRVLERMTPSEDSARM-NPNYKACTVRLQAILLTADCNPRWLTNHVPSLAISR 120

Query: 121 KVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQRT 166
           KVPLILVK KEGSLRLG+LVNLKTAIAIGIK NGSPVNQLIGEIL RT
Sbjct: 121 KVPLILVKDKEGSLRLGELVNLKTAIAIGIKDNGSPVNQLIGEILSRT 167

BLAST of Lag0029547 vs. ExPASy Swiss-Prot
Match: Q32LC1 (Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-04
Identity = 35/112 (31.25%), Postives = 52/112 (46.43%), Query Frame = 0

Query: 53  LKKQFAVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPS 112
           ++KQ A+G+NEVTR LER                    +L   L      P  +T+H+  
Sbjct: 109 VRKQLAIGINEVTRALERN-------------------ELLLALACKSAKPAIVTSHLVQ 168

Query: 113 LAISRKVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQR 165
           L++SR VP   V     S RL  ++ LK  +A+G K N +   + +  IL R
Sbjct: 169 LSVSRGVPACQV--PRLSERLAPVLGLKCVLALGFKRNTTAFGEELRAILPR 199

BLAST of Lag0029547 vs. ExPASy Swiss-Prot
Match: P78345 (Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.9e-04
Identity = 33/112 (29.46%), Postives = 52/112 (46.43%), Query Frame = 0

Query: 53  LKKQFAVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHVPS 112
           ++KQ A+GVNEVTR LER                    +L  +L+     P  +T+H+  
Sbjct: 109 VRKQLAIGVNEVTRALERR-------------------ELLLVLVCKSVKPAMITSHLIQ 168

Query: 113 LAISRKVPLILVKGKEGSLRLGQLVNLKTAIAIGIKANGSPVNQLIGEILQR 165
           L++SR VP   V     S R+  ++ LK  +A+  K N +     +  I+ R
Sbjct: 169 LSLSRSVPACQV--PRLSERIAPVIGLKCVLALAFKKNTTDFVDEVRAIIPR 199

BLAST of Lag0029547 vs. ExPASy Swiss-Prot
Match: Q80UU2 (Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 9.3e-04
Identity = 30/100 (30.00%), Postives = 49/100 (49.00%), Query Frame = 0

Query: 51  IWLKKQFAVGVNEVTRVLERMKPSGDSASITNPNYKACTVKLQAILLTADCNPLWLTNHV 110
           + ++KQ  +GVNEVTR LER                    +L  +L+     P  +T+H+
Sbjct: 102 VHVRKQLVIGVNEVTRALERN-------------------ELLLVLVCKSVKPAIITSHL 161

Query: 111 PSLAISRKVPLILVKGKEGSLRLGQLVNLKTAIAIGIKAN 151
             L++SR VP   V   + S R+  ++ LK  +A+G + N
Sbjct: 162 IQLSLSRTVPACQV--PQLSERIAPVIGLKCVLALGSRKN 180

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022938626.11.2e-7289.88ribonuclease P protein subunit p38 [Cucurbita moschata][more]
KAG6579150.11.0e-7189.29hypothetical protein SDJN03_23598, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023549838.12.9e-7188.10ribonuclease P protein subunit p38 [Cucurbita pepo subsp. pepo][more]
XP_038875290.14.2e-7086.83ribonuclease P protein subunit p38 [Benincasa hispida][more]
XP_022993803.12.3e-6886.90ribonuclease P protein subunit p38 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Q32LC11.1e-0431.25Ribonuclease P protein subunit p38 OS=Bos taurus OX=9913 GN=RPP38 PE=2 SV=2[more]
P783451.9e-0429.46Ribonuclease P protein subunit p38 OS=Homo sapiens OX=9606 GN=RPP38 PE=1 SV=2[more]
Q80UU29.3e-0430.00Ribonuclease P protein subunit p38 OS=Mus musculus OX=10090 GN=Rpp38 PE=1 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 25..45
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availablePANTHERPTHR47903OS07G0636400 PROTEINcoord: 4..165
IPR004038Ribosomal protein L7Ae/L30e/S12e/Gadd45PFAMPF01248Ribosomal_L7Aecoord: 91..152
e-value: 1.3E-5
score: 24.8
IPR02906450S ribosomal protein L30e-likeGENE3D3.30.1330.30coord: 3..166
e-value: 9.2E-22
score: 79.4
IPR02906450S ribosomal protein L30e-likeSUPERFAMILY55315L30e-likecoord: 27..163

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029547.1Lag0029547.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0043232 intracellular non-membrane-bounded organelle