Lag0029527 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029527
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionIleal sodium/bile acid cotransporter, putative
Locationchr8: 39828372 .. 39828866 (+)
RNA-Seq ExpressionLag0029527
SyntenyLag0029527
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAACTTCACACCAAACCTCTGTTGATATGAATGCACTTGCTTCCATTATCAATAGAATCAATCAAAGAAACAATGGAATCAACATTTTTGCCACACCATCAGATTGCCTTCCAATCTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCAGCAGCCCTCAGAATCTTGGCAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCAAGTTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGGTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCACGTTTCTTCGAGAAGGTCGGCGCCCTTTTCGCTGCCATTGGTGTGTGCATCATATCAAGCCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTCTGCCTTCTCCTTGGTTGTCTTTGGTTTATCATTCAAGTGA

mRNA sequence

ATGGCTTCAACTTCACACCAAACCTCTGTTGATATGAATGCACTTGCTTCCATTATCAATAGAATCAATCAAAGAAACAATGGAATCAACATTTTTGCCACACCATCAGATTGCCTTCCAATCTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCAGCAGCCCTCAGAATCTTGGCAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCAAGTTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGGTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCACGTTTCTTCGAGAAGGTCGGCGCCCTTTTCGCTGCCATTGGTGTGTGCATCATATCAAGCCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTCTGCCTTCTCCTTGGTTGTCTTTGGTTTATCATTCAAGTGA

Coding sequence (CDS)

ATGGCTTCAACTTCACACCAAACCTCTGTTGATATGAATGCACTTGCTTCCATTATCAATAGAATCAATCAAAGAAACAATGGAATCAACATTTTTGCCACACCATCAGATTGCCTTCCAATCTGCATCAGAATGCAGCAGCAGAGGCCTCAACCAGCAGCCAGCAGCCCTCAGAATCTTGGCAAGACAATTCTTGGCCTTACTTTTCAGGCAGTTTTGGCCTTGTTCATCAGCTCACCAAGTTCATCTCCTCCACTTTTGACACATCTTTTTGGTGCTGCTGTTTTGATTAGCTTTGCAGTTTCATTTGCTGGTCTTTTCCTTCAAAATTCGTTCCCGAGAATCGCACGTTTCTTCGAGAAGGTCGGCGCCCTTTTCGCTGCCATTGGTGTGTGCATCATATCAAGCCTTCTTCTTGTTCATCAGAACTTTGCTTGGATCTGTTGGTTGGCTTCTGCCTTCTCCTTGGTTGTCTTTGGTTTATCATTCAAGTGA

Protein sequence

MASTSHQTSVDMNALASIINRINQRNNGINIFATPSDCLPICIRMQQQRPQPAASSPQNLGKTILGLTFQAVLALFISSPSSSPPLLTHLFGAAVLISFAVSFAGLFLQNSFPRIARFFEKVGALFAAIGVCIISSLLLVHQNFAWICWLASAFSLVVFGLSFK
Homology
BLAST of Lag0029527 vs. NCBI nr
Match: KGN49808.1 (hypothetical protein Csa_004650 [Cucumis sativus])

HSP 1 Score: 214.9 bits (546), Expect = 5.1e-52
Identity = 115/165 (69.70%), Postives = 129/165 (78.18%), Query Frame = 0

Query: 1   MASTSHQTSVDMNALASIINRINQRNNGINIFATPSDCLPICIRMQQQRPQPAASSPQNL 60
           MASTSHQTS+DM+A +S I  I+QRN G+    TPS+CLP+ IRMQQ  PQ  A S Q L
Sbjct: 1   MASTSHQTSLDMSAFSSFIRTISQRNYGLGCCCTPSNCLPVFIRMQQS-PQATADSSQKL 60

Query: 61  GKTILGLTFQAVLALFISS-PSSSPPLLTHLFGAAVLISFAVSFAGLFLQNSFPRIARFF 120
           GK IL L+FQAVLALFISS P+S PPLL H F AAV ISFAVSFA LFL NSFPR A  F
Sbjct: 61  GKIILSLSFQAVLALFISSPPTSPPPLLIHFFAAAVFISFAVSFAALFLHNSFPRTAHLF 120

Query: 121 EKVGALFAAIGVCIISSLLLVHQNFAWICWLASAFSLVVFGLSFK 165
           EKVGALF+A GVC I+S LLVHQNFAWICW+A  FS++VF LSFK
Sbjct: 121 EKVGALFSAFGVCFIASFLLVHQNFAWICWVACTFSIIVFALSFK 164

BLAST of Lag0029527 vs. NCBI nr
Match: KAA0050246.1 (putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ98160.1 putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa])

HSP 1 Score: 191.8 bits (486), Expect = 4.6e-45
Identity = 105/153 (68.63%), Postives = 120/153 (78.43%), Query Frame = 0

Query: 12  MNALASIINRINQRNNGINIFATPSDCLPICIRMQQQRPQPAASSPQNLGKTILGLTFQA 71
           MN L S I  IN+RN  IN        LPICI MQ+  P  ++ +  N+GKTILGLTFQA
Sbjct: 1   MNELYSFITAINERNPEIN-------SLPICITMQRPSPANSSKTENNVGKTILGLTFQA 60

Query: 72  VLALFISSPSSSPPLLTHLFGAAVLISFAVSFAGLFLQNSFPRIARFFEKVGALFAAIGV 131
           VLALFI+SP+SSPPLLTHLF AAVLISFAVSFAG+FLQN FPRIA  FEK+GAL AAIGV
Sbjct: 61  VLALFITSPNSSPPLLTHLFAAAVLISFAVSFAGIFLQNGFPRIALLFEKIGALIAAIGV 120

Query: 132 CIISSLLLVHQNFAWICWLASAFSLVVFGLSFK 165
           CI++S LL+HQNFAWI WLAS FSL+ F LSF+
Sbjct: 121 CIVAS-LLIHQNFAWISWLASGFSLMAFVLSFR 145

BLAST of Lag0029527 vs. NCBI nr
Match: KGN49803.1 (hypothetical protein Csa_004681 [Cucumis sativus])

HSP 1 Score: 190.7 bits (483), Expect = 1.0e-44
Identity = 107/164 (65.24%), Postives = 125/164 (76.22%), Query Frame = 0

Query: 1   MASTSHQTSVDMNALASIINRINQRNNGINIFATPSDCLPICIRMQQQRPQPAASSPQNL 60
           M S+S Q S+DMN L S+I  IN+RN  IN        LPICI MQ   P  ++ +  N+
Sbjct: 1   MESSSQQISIDMNHLYSLITSINERNPEIN-------GLPICIIMQTASPANSSKTENNV 60

Query: 61  GKTILGLTFQAVLALFISSPSSSPPLLTHLFGAAVLISFAVSFAGLFLQNSFPRIARFFE 120
           G TILGLTFQAVLALFI+S +SSPPLLTHLFGAAVLISFAVSF G+FLQ+ FPRIA  FE
Sbjct: 61  GTTILGLTFQAVLALFITSSTSSPPLLTHLFGAAVLISFAVSFPGVFLQDGFPRIALLFE 120

Query: 121 KVGALFAAIGVCIISSLLLVHQNFAWICWLASAFSLVVFGLSFK 165
           K+GAL AAIGVCI++S LL+HQNFAWI WLA  FSL+ F LSF+
Sbjct: 121 KIGALIAAIGVCILAS-LLIHQNFAWISWLACGFSLMAFLLSFR 156

BLAST of Lag0029527 vs. NCBI nr
Match: KAG6579132.1 (hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 159.1 bits (401), Expect = 3.3e-35
Identity = 85/132 (64.39%), Postives = 106/132 (80.30%), Query Frame = 0

Query: 32  FATPSDCLPICIRMQQQRPQPAASSPQNLGKTILGLTFQAVLALFISSPSSSPPLLTHLF 91
           F+TP DCLPI  R ++QR +P      N+GK I+GLT QA+LA+FISSPSSSPPLL  LF
Sbjct: 3   FSTPRDCLPIW-RAREQRLEP-DKGHSNVGKAIIGLTSQALLAMFISSPSSSPPLLRVLF 62

Query: 92  GAAVLISFAVSFAGLFLQNSFPRIARFFEKVGALFAAIGVCIISSLLLVHQNFAWICWLA 151
           GA + ISF +SFAG+FL+N+FP+ AR FEK+GALFAAIGV II+S LL+H+N+AWI  LA
Sbjct: 63  GATMFISFLLSFAGIFLRNAFPKAARLFEKLGALFAAIGVSIIASFLLMHENYAWISGLA 122

Query: 152 SAFSLVVFGLSF 164
             FSL+VFGLS+
Sbjct: 123 CVFSLIVFGLSY 132

BLAST of Lag0029527 vs. NCBI nr
Match: XP_022146444.1 (uncharacterized protein LOC111015658 [Momordica charantia])

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-35
Identity = 93/127 (73.23%), Postives = 101/127 (79.53%), Query Frame = 0

Query: 1   MASTSHQTSVDMNALASIINRINQRNNGINIF------ATPSDCLPICIRMQQQRPQPAA 60
           MAST  QTSVDMNAL+S I  IN+RN GI+ F      +TPSDCLPICIRM  QRP PA 
Sbjct: 1   MASTPQQTSVDMNALSSFITAINERNLGISSFTWGGGTSTPSDCLPICIRM--QRPPPAK 60

Query: 61  SSPQNLGKTILGLTFQAVLALFISSPSSSPPLLTHLFGAAVLISFAVSFAGLFLQNSFPR 120
           SS Q+LGKTILGLTFQAVLALFIS PSS P L T LFGAAVLISFAVSFAGLFLQ ++PR
Sbjct: 61  SS-QSLGKTILGLTFQAVLALFISLPSSPPQLPTLLFGAAVLISFAVSFAGLFLQTAYPR 120

Query: 121 IARFFEK 122
           +A  FEK
Sbjct: 121 MALLFEK 124

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN49808.15.1e-5269.70hypothetical protein Csa_004650 [Cucumis sativus][more]
KAA0050246.14.6e-4568.63putative Ileal sodium/bile acid cotransporter [Cucumis melo var. makuwa] >TYJ981... [more]
KGN49803.11.0e-4465.24hypothetical protein Csa_004681 [Cucumis sativus][more]
KAG6579132.13.3e-3564.39hypothetical protein SDJN03_23580, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022146444.15.7e-3573.23uncharacterized protein LOC111015658 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029527.1Lag0029527.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane