Lag0029501 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029501
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr8: 39558087 .. 39558392 (-)
RNA-Seq ExpressionLag0029501
SyntenyLag0029501
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGGGACCAATCATGGGCCATTATATCAAGCCCTCCCTCGCCTTTTTGCGCTGTCCAGTAGGAAAAATATGATTGTCTCGGATGCCTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTCGACAGGGAGGCCTTTGCTCAGGCGGAATGTGCTTCCTCCTTTCCAGTTCCTGCATTATCTAGAGGGGCGGACCACATGCTTTGGAACCCGGACTCCAAGGGACGCTTCTCCGTTGCTTCAACTAGGCAATTCTATTGGAATATGTCATCGCCAGATCGGCCTTAG

mRNA sequence

ATGCCTGGGACCAATCATGGGCCATTATATCAAGCCCTCCCTCGCCTTTTTGCGCTGTCCAGTAGGAAAAATATGATTGTCTCGGATGCCTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTCGACAGGGAGGCCTTTGCTCAGGCGGAATGTGCTTCCTCCTTTCCAGTTCCTGCATTATCTAGAGGGGCGGACCACATGCTTTGGAACCCGGACTCCAAGGGACGCTTCTCCGTTGCTTCAACTAGGCAATTCTATTGGAATATGTCATCGCCAGATCGGCCTTAG

Coding sequence (CDS)

ATGCCTGGGACCAATCATGGGCCATTATATCAAGCCCTCCCTCGCCTTTTTGCGCTGTCCAGTAGGAAAAATATGATTGTCTCGGATGCCTGGGACCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTCGACAGGGAGGCCTTTGCTCAGGCGGAATGTGCTTCCTCCTTTCCAGTTCCTGCATTATCTAGAGGGGCGGACCACATGCTTTGGAACCCGGACTCCAAGGGACGCTTCTCCGTTGCTTCAACTAGGCAATTCTATTGGAATATGTCATCGCCAGATCGGCCTTAG

Protein sequence

MPGTNHGPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPVPALSRGADHMLWNPDSKGRFSVASTRQFYWNMSSPDRP
Homology
BLAST of Lag0029501 vs. NCBI nr
Match: KAA0037436.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 7   GPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPVPAL 66
           G L    PRL+ LS  +N  + + WD  T+ W L+PRRPL DRE            +  L
Sbjct: 589 GSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTL 648

Query: 67  SRGADHMLWNPDSKGRFSVASTRQ 91
           + G ++M+W P+ KG ++ AS ++
Sbjct: 649 NGGKNNMIWTPNDKGTYTAASAKR 672

BLAST of Lag0029501 vs. NCBI nr
Match: TYK00226.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 30/84 (35.71%), Postives = 46/84 (54.76%), Query Frame = 0

Query: 7   GPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPVPAL 66
           G L    PRL+ LS  +N  + + WD  T+ W L+PRRPL DRE            +  L
Sbjct: 564 GSLSNTYPRLYTLSKAQNATIEELWDPNTNDWNLHPRRPLNDREIELWTNLKGILKILTL 623

Query: 67  SRGADHMLWNPDSKGRFSVASTRQ 91
           + G ++M+W P+ KG ++ AS ++
Sbjct: 624 NGGKNNMIWTPNDKGTYTAASAKR 647

BLAST of Lag0029501 vs. NCBI nr
Match: KAA0045138.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK23599.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 1.9e-09
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0

Query: 7   GPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPVPAL 66
           G L  A PRLFAL+  K + V DAW+   + W +  RR L DRE    A+     P P  
Sbjct: 693 GRLSTAYPRLFALTLDKEISVKDAWNTFDNRWNIIFRRELNDRERSKWAKILEILPTPRS 752

Query: 67  SRGADHMLWNPDSKGRFSVASTR 90
           +RG+  + WNPDS   FS+AS +
Sbjct: 753 NRGSSKLTWNPDSNNSFSIASAK 775

BLAST of Lag0029501 vs. NCBI nr
Match: KAA0058105.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 4.3e-09
Identity = 37/95 (38.95%), Postives = 48/95 (50.53%), Query Frame = 0

Query: 7   GPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPVPAL 66
           G L  A PRLFALS  K   + D W+   + W++  RR L DRE     +   + P+P  
Sbjct: 157 GCLSTAYPRLFALSIDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWQKILENLPIPRT 216

Query: 67  SRGADHMLWNPDSKGRFSVASTRQFYWNMSSPDRP 102
           +RG     W PDSK  FS+AS +        PDRP
Sbjct: 217 NRGPSKPTWIPDSKKLFSIASAKSCI--SHQPDRP 249

BLAST of Lag0029501 vs. NCBI nr
Match: KAA0058554.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK01631.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.2e-08
Identity = 33/86 (38.37%), Postives = 45/86 (52.33%), Query Frame = 0

Query: 4   TNHGPLYQALPRLFALSSRKNMIVSDAWDHTTSSWKLYPRRPLFDREAFAQAECASSFPV 63
           +  G L  A PRLFALS  K   + D W+   + W++  RR L DRE     +   + P+
Sbjct: 743 SQEGCLSTAYPRLFALSLDKESSIKDVWNSNNNQWEITFRRKLNDRELSTWEKILENLPI 802

Query: 64  PALSRGADHMLWNPDSKGRFSVASTR 90
           P  +RG     W PDSK  FS+AS +
Sbjct: 803 PRTNRGPSKPTWIPDSKKSFSIASAK 828

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0037436.11.9e-0935.71LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK00226.11.9e-0935.71LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0045138.11.9e-0942.17LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK235... [more]
KAA0058105.14.3e-0938.95LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0058554.11.2e-0838.37LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK016... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029501.1Lag0029501.1mRNA