Lag0029491 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029491
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Two-component response regulator
Location	chr8: 39471731 .. 39472420 (-)
RNA-Seq Expression	Lag0029491
Synteny	Lag0029491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCGTTGCTGTTGAAACCACGCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCTTCCTATCATGGTATTAATCGATTTCACTCTCTCTTTCTTGCCTTTTTTTCTTTCCCTCTCGGATTTAGGGCTAATCGGTGTTTGGTTTTCTGTTTTGATTAGTTACTGCTGTTGATTCTGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCGTGCTCACGACGATGAACAACGCGACCACTCCAAAATCGCCCCGCCCTCGAATCTTCATCCTAATTCGCGACAGGAGGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGAGCTCCTCAGGAAGATCAAGGTTTGCCCTAATTTCCTCTAATTTCCCCTCCTTTTTTTTAAAACATTCTGCCGAATCCAATGAGATTCATTTCGATGACTAAATCAATTTGATCATGTAATTGCAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACGTTCCTTCGAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCAACCAGGAATTGA

mRNA sequence

ATGGGCGTTGCTGTTGAAACCACGCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCTGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCGTGCTCACGACGATGAACAACGCGACCACTCCAAAATCGCCCCGCCCTCGAATCTTCATCCTAATTCGCGACAGGAGGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGAGCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACGTTCCTTCGAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCAACCAGGAATTGA

Coding sequence (CDS)

ATGGGCGTTGCTGTTGAAACCACGCAGTTCCATGTTCTTGCTGTTGATGATAGCTTCATCGATCGGAAATTGATCGAGCGCCTCCTCAAAACCTCTTCCTATCATGTTACTGCTGTTGATTCTGGTACCAAGGCCTTGGAATTTCTCGGTCTTGTTGAAGATCGTGCTCACGACGATGAACAACGCGACCACTCCAAAATCGCCCCGCCCTCGAATCTTCATCCTAATTCGCGACAGGAGGTGGATGTGAATTTGATCATCACGGATTACAGTATGCCTGGAATGAGCGGCTACGAGCTCCTCAGGAAGATCAAGGAATCGAAATCTCTTAAAGACATACCAGTTGTGATCATGTCCTCTGAGAACGTTCCTTCGAGAATCAACAGATGCTTGGAAGAAGGAGCTGAAGAATTCTTCCTCAAACCAGTTCAATTGTCTGATGTGAGGAAGTTGAGACCTCATTTGATTAAAGAAAAATCAACCAGGAATTGA

Protein sequence

MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDEQRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN

Homology

[Close]

BLAST of Lag0029491 vs. NCBI nr
Match: KAG7032635.1 (Two-component response regulator ARR9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 271.2 bits (692), Expect = 6.0e-69
Identity = 144/164 (87.80%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVED-RAHDD 60
           MGVAVETT+FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVED    DD
Sbjct: 1   MGVAVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDPDLDDD 60

Query: 61  EQRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMS 120
           +   HSK+ P       S QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIMS
Sbjct: 61  DDEQHSKLPP-------SIQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMS 120

Query: 121 SENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 164
           SENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN
Sbjct: 121 SENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 157

[Close]

BLAST of Lag0029491 vs. NCBI nr
Match: XP_038875323.1 (two-component response regulator ORR4-like [Benincasa hispida])

HSP 1 Score: 270.4 bits (690), Expect = 1.0e-68
Identity = 145/163 (88.96%), Postives = 149/163 (91.41%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VAVETT+FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGL ED  H DE
Sbjct: 1   MVVAVETTRFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLAEDHNH-DE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
           + + SKIA PSN H    Q+VDVNLIITDYSMPGMSGYELLRKIKESKS KDIPVVIMSS
Sbjct: 61  ETNSSKIA-PSNQH---HQDVDVNLIITDYSMPGMSGYELLRKIKESKSFKDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 164
           ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN
Sbjct: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 158

[Close]

BLAST of Lag0029491 vs. NCBI nr
Match: XP_004140290.1 (two-component response regulator ORR10 [Cucumis sativus] >KGN51089.1 hypothetical protein Csa_008199 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 144/163 (88.34%), Postives = 147/163 (90.18%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VAVE+T FHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLV+   H D+
Sbjct: 1   MVVAVESTPFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVQ---HHDQ 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
           Q D SKIAP  N H    QEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS
Sbjct: 61  QTD-SKIAPDQNHH---HQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 164
           ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKST N
Sbjct: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTNN 156

[Close]

BLAST of Lag0029491 vs. NCBI nr
Match: XP_023550008.1 (two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 141/163 (86.50%), Postives = 146/163 (89.57%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           MGVAVE+T+FHVLAVDDSFIDRKLIERLLKTSSYHVT VDSG KALEFLGLV D  HDD+
Sbjct: 1   MGVAVESTRFHVLAVDDSFIDRKLIERLLKTSSYHVTVVDSGNKALEFLGLVGD--HDDD 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
               S+IAP      N  QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIMSS
Sbjct: 61  DETDSEIAP-----SNHHQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 164
           ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN
Sbjct: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 156

[Close]

BLAST of Lag0029491 vs. NCBI nr
Match: XP_022938947.1 (two-component response regulator ORR4-like [Cucurbita moschata])

HSP 1 Score: 266.2 bits (679), Expect = 1.9e-67
Identity = 142/165 (86.06%), Postives = 146/165 (88.48%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           MGVAVE+TQFHVLAVDDSFIDRKLIERLLKTSSYHVT VDSG KALEFLGLV D   DD+
Sbjct: 1   MGVAVESTQFHVLAVDDSFIDRKLIERLLKTSSYHVTVVDSGNKALEFLGLVGDHDDDDD 60

Query: 61  QRDH--SKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIM 120
             D   S+IAP      N  QEVDVNLIITDYSMPGMSGY+LLRKIKESKSLKDIPVVIM
Sbjct: 61  DDDEPDSEIAP-----SNHHQEVDVNLIITDYSMPGMSGYDLLRKIKESKSLKDIPVVIM 120

Query: 121 SSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 164
           SSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN
Sbjct: 121 SSENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEKSTRN 160

[Close]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot
Match: B8BLZ4 (Two-component response regulator ORR10 OS=Oryza sativa subsp. indica OX=39946 GN=RR10 PE=2 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.8e-50
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VA+E   FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL     HD E
Sbjct: 1   MAVAIE-APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL-----HDHE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
               S I+  S+     +QEV VNLIITDY MPGM+GY+LL+KIKES  L+DIPVVIMSS
Sbjct: 61  D---SPISTQSD-----QQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 160
           +N+PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 DNIPSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot
Match: Q2QXY3 (Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica OX=39947 GN=RR10 PE=2 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 3.8e-50
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VA+E   FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL     HD E
Sbjct: 1   MAVAIE-APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL-----HDHE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
               S I+  S+     +QEV VNLIITDY MPGM+GY+LL+KIKES  L+DIPVVIMSS
Sbjct: 61  D---SPISTQSD-----QQEVGVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 160
           +N+PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 DNIPSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot
Match: Q4GZK2 (Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=RR9 PE=2 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.9e-50
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VA+E   FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL     HD E
Sbjct: 1   MAVAIE-APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL-----HDHE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
               S I+  S+     +QEV VNLIITDY MPGM+GY+LL+KIKES  L+DIPVVIMSS
Sbjct: 61  D---SPISTQSD-----QQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 160
           +N+PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 DNIPSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot
Match: Q2RAP3 (Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 GN=RR9 PE=2 SV=2)

HSP 1 Score: 198.7 bits (504), Expect = 4.9e-50
Identity = 108/159 (67.92%), Postives = 127/159 (79.87%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M VA+E   FHVLAVDDS  DRKLIERLLKTSS+ VT VDSG+KALEFLGL     HD E
Sbjct: 1   MAVAIE-APFHVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGL-----HDHE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
               S I+  S+     +QEV VNLIITDY MPGM+GY+LL+KIKES  L+DIPVVIMSS
Sbjct: 61  D---SPISTQSD-----QQEVAVNLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 160
           +N+PSRINRCLEEGA+EFFLKPV+LSD+ KL+PH++K +
Sbjct: 121 DNIPSRINRCLEEGADEFFLKPVRLSDMSKLKPHILKSR 145

[Close]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot
Match: Q4GZK7 (Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=RR4 PE=2 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-49
Identity = 106/159 (66.67%), Postives = 126/159 (79.25%), Query Frame = 0


Query: 1   MGVAVETTQFHVLAVDDSFIDRKLIERLLKTSSYHVTAVDSGTKALEFLGLVEDRAHDDE 60
           M V    ++FHVLAVDDS IDRKLIE LLK SSY VT VDSG+KALE LGL       DE
Sbjct: 1   MTVVDAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGL------RDE 60

Query: 61  QRDHSKIAPPSNLHPNSRQEVDVNLIITDYSMPGMSGYELLRKIKESKSLKDIPVVIMSS 120
             D S  + PS+  P+  QE+DVNLIITDY MPGM+GY+LL+++K S SLKDIPVVIMSS
Sbjct: 61  GDDSS--SSPSSSSPD-HQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSS 120

Query: 121 ENVPSRINRCLEEGAEEFFLKPVQLSDVRKLRPHLIKEK 160
           ENVP+RINRCLE+GAEEFFLKPV+L+D++KL+ HL+K K
Sbjct: 121 ENVPARINRCLEDGAEEFFLKPVKLADMKKLKSHLLKRK 150

The following BLAST results are available for this feature:

BLAST of Lag0029491 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032635.1	6.0e-69	87.80	Two-component response regulator ARR9 [Cucurbita argyrosperma subsp. argyrosperm...	[more]
XP_038875323.1	1.0e-68	88.96	two-component response regulator ORR4-like [Benincasa hispida]	[more]
XP_004140290.1	1.5e-67	88.34	two-component response regulator ORR10 [Cucumis sativus] >KGN51089.1 hypothetica...	[more]
XP_023550008.1	1.5e-67	86.50	two-component response regulator ORR4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938947.1	1.9e-67	86.06	two-component response regulator ORR4-like [Cucurbita moschata]	[more]

BLAST of Lag0029491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8BLZ4	3.8e-50	67.92	Two-component response regulator ORR10 OS=Oryza sativa subsp. indica OX=39946 GN...	[more]
Q2QXY3	3.8e-50	67.92	Two-component response regulator ORR10 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q4GZK2	4.9e-50	67.92	Two-component response regulator ORR9 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
Q2RAP3	4.9e-50	67.92	Two-component response regulator ORR9 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q4GZK7	1.4e-49	66.67	Two-component response regulator ORR4 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001789	Signal transduction response regulator, receiver domain	SMART	SM00448	REC_2	coord: 10..152 e-value: 1.8E-17 score: 74.0
IPR001789	Signal transduction response regulator, receiver domain	PFAM	PF00072	Response_reg	coord: 79..150 e-value: 6.8E-16 score: 58.4
IPR001789	Signal transduction response regulator, receiver domain	PROSITE	PS50110	RESPONSE_REGULATORY	coord: 11..156 score: 33.88097
None	No IPR available	GENE3D	3.40.50.2300		coord: 11..162 e-value: 3.7E-32 score: 114.2
None	No IPR available	PIRSR	PIRSR002937-1	PIRSR002937-1	coord: 79..149 e-value: 1.4E-5 score: 22.1
None	No IPR available	PANTHER	PTHR43874:SF140	RESPONSE REGULATOR ARR8, PUTATIVE-RELATED	coord: 3..161
None	No IPR available	PANTHER	PTHR43874	TWO-COMPONENT RESPONSE REGULATOR	coord: 3..161
None	No IPR available	CDD	cd17581	REC_typeA_ARR	coord: 12..151 e-value: 1.46901E-73 score: 214.537
IPR011006	CheY-like superfamily	SUPERFAMILY	52172	CheY-like	coord: 9..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029491.1	Lag0029491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
molecular_function	GO:0016301	kinase activity