Lag0029477 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029477
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionProtein SIS2
Locationchr8: 39371210 .. 39373416 (-)
RNA-Seq ExpressionLag0029477
SyntenyLag0029477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCATTCCAATTCCCAACACTTCCATACCTATGGCGAGGCTCCTTATCTCGACCCGAACCTTCCCTTTTCCTCCTCTTCCCATCGCTCCGGCACGGGCGTTCTTCAGACCCTGCAGATTGTCGCCGGCGGTCAGATTCTCCGGCGACCCATCGGCCTCCAGAGCCCTACGAGTCGTGACGACTCGTGCCGGCGCCAGTACCAGTAGTTACATCTTCGCCTTCTCTATCCCTTTCTCTCTTATTCTCGTCACTGCCCTCACTGCTCTTAAAATCGGCGATAACCTCGACAAGAAGTTTCTTGAGGAGGTACTTTGTGATTTCTAATTTGGCTCCATTTTGTTTGTGGGACTGAATTTTGTTGGAGATTCTGGTTGCTTTCAGTTCGTGTTTGGTTTAGATAAGATTTCCTGTAATGTTGAGGCTTGTGTGATATTAATGCAGATAACCTGTTTGATTTAAGGCTTACTAGTTAAGGAAAATTACATTTTCATAAGTTTTGACGTTAGAATATGGGTTTTATGGTTGAACTAGCATTCATGTTTAAAATTAGTCTCCGAAGACATGGCTTGTCTTCTATCATGGTGGCACACCTGAACTAAGGTTGTGAAGTGTGTTATGAGTTTTTTAAGGCCAAGTATTACAGGGTTGAGAAATTGTTACTAAGATGCATTTAAGCTAGCTCTATAAGTGCTAATTTCAATACTAAGATTGTTCTAAGTTGTTCTTGTGTGCACTCTATTTTCAGTTTAGTGGGATAAGAAAATAGGAAGAGATCGTTTTGATAAAAATACTAGCTTCATTGAGAAAAAAAAATGAAAGAATACAAGAACATCAAAAAAATACAAGTTTGCCAACTAAAGGAGTGTTCAGTCGAGAATGATAACACCTAACGCATAATTATAAAAGACTTTGTCACCAACGTCTAGAGAGAAATATGTAATCTAGTAAGGATCCATACATTCTGACGGGTTCCTTTCTAGGCCTCTAAATCACTCTAAAGAAAAAAGGGAAGATGGAAAAATATTAAACTTCACTGAAATGAGGTGAAAGCAATTTGTTAAAAGAGATTTTTTTTCCAGTTCTATCTCTCACTAGTCTCTACTTACTCATTTCTTGGTTGAACTCCTTCGGAAGAAGGAAAAGAGTTAATTCTCATCCCATTAATAACATAGCTGTAGAGATTCCTTCTTTTTAAGTTTTCGTTACAGTGATTGAGATACACCCCCACCCAAAAGTTGCCCTGTTTGTGCATCAGTGCTCAAAAGCTTGCTTTTGTAGATTCATGGCCACTTGATTAGATGATCCCTCTCCCTGACACATGGATAGTCTAGGTATTAGAGGCCTCATTCCTGCATGAGAGCTTGAACTTAGGACTTGGAAGGTATCTCAAAACATTTCAAATCCTTTCCACCCTGGTCACCCATAGAGGTTAGGTAAAAGCAGAAAAATAGGGAGATGGCTCCATATACAAAGCTCTTGGATGAGTTTGATCATGTCATTTCACTTCAAGTTCACATACTTGAGATAAAGAGATCAAAAGAACTTGATTCATTTTGTTGTATGGTGATCTGTTTATGAGGCAAATTGATTCCTGTAACTGGGAAATGGGCACTGACTTTGTTGTATTTTGTTTGTGAACCAGCTTGCTCTTAACCAAGCCATCCTGGAGGAAGATGAGGAGAACAAAGATGGTAGTTCAGAAATATCTTTTGAAGAAAAACCAGCTCTTCCACGAACTCGAAACCGCCCTAAAAGGGAAGCTGAGGTATAAATAACTGCATTGTTTTTGGAGGTGAACATGAAAGGGATCAGACGGCAGAGAAATGGCTCAAGGAACTAGGAAGCTTCCATGTATATTGTATGTAATTGGTATTTTTCCCCCTTCTTTAAAATGATTAGTAAAAAGTTAGTTTGTATGCCAAGTAATTTCGATATTTAATAATATTGTTATATATTCTTCAAATTTGCTTCATTTCATTACACTTTGATTGAGGTTGCATATTGTGAGAATTACAACGATGGCTAGTTGGATCATTCATGACAAGGTATTTCATCATTTCTAATATGTGAAAAGCCTTGTAATGAAAAGTTTGAAGGTTTTGTTCTTTACTGCACTCCTAAAGTATTCTACTATCAAGTTGAAGATCAATCTAGCCATGGAAAGGTTTGAAGTGTTTCTTCATTATCTACCTGTAGTGTCATGA

mRNA sequence

ATGTCCATTCCAATTCCCAACACTTCCATACCTATGGCGAGGCTCCTTATCTCGACCCGAACCTTCCCTTTTCCTCCTCTTCCCATCGCTCCGGCACGGGCGTTCTTCAGACCCTGCAGATTGTCGCCGGCGGTCAGATTCTCCGGCGACCCATCGGCCTCCAGAGCCCTACGAGTCGTGACGACTCGTGCCGGCGCCAGTACCAGTAGTTACATCTTCGCCTTCTCTATCCCTTTCTCTCTTATTCTCGTCACTGCCCTCACTGCTCTTAAAATCGGCGATAACCTCGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAACCAAGCCATCCTGGAGGAAGATGAGGAGAACAAAGATGGTAGTTCAGAAATATCTTTTGAAGAAAAACCAGCTCTTCCACGAACTCGAAACCGCCCTAAAAGGGAAGCTGAGGTTTTGTTCTTTACTGCACTCCTAAAGTATTCTACTATCAAGTTGAAGATCAATCTAGCCATGGAAAGGTTTGAAGTGTTTCTTCATTATCTACCTGTAGTGTCATGA

Coding sequence (CDS)

ATGTCCATTCCAATTCCCAACACTTCCATACCTATGGCGAGGCTCCTTATCTCGACCCGAACCTTCCCTTTTCCTCCTCTTCCCATCGCTCCGGCACGGGCGTTCTTCAGACCCTGCAGATTGTCGCCGGCGGTCAGATTCTCCGGCGACCCATCGGCCTCCAGAGCCCTACGAGTCGTGACGACTCGTGCCGGCGCCAGTACCAGTAGTTACATCTTCGCCTTCTCTATCCCTTTCTCTCTTATTCTCGTCACTGCCCTCACTGCTCTTAAAATCGGCGATAACCTCGACAAGAAGTTTCTTGAGGAGCTTGCTCTTAACCAAGCCATCCTGGAGGAAGATGAGGAGAACAAAGATGGTAGTTCAGAAATATCTTTTGAAGAAAAACCAGCTCTTCCACGAACTCGAAACCGCCCTAAAAGGGAAGCTGAGGTTTTGTTCTTTACTGCACTCCTAAAGTATTCTACTATCAAGTTGAAGATCAATCTAGCCATGGAAAGGTTTGAAGTGTTTCTTCATTATCTACCTGTAGTGTCATGA

Protein sequence

MSIPIPNTSIPMARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVVTTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDGSSEISFEEKPALPRTRNRPKREAEVLFFTALLKYSTIKLKINLAMERFEVFLHYLPVVS
Homology
[Close]
BLAST of Lag0029477 vs. NCBI nr
Match: KAG7032638.1 (hypothetical protein SDJN02_06688 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 245.0 bits (624), Expect = 5.0e-61
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 1   MSIPIPNTSIPMARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVV 60
           M+ PIP TS  MARLLISTR FPFPPLP+ PARAFFRP +LSPAVRFSGDPSA+RALRVV
Sbjct: 1   MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVV 60

Query: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDG 120
           TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI+EEDEENKDG
Sbjct: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIMEEDEENKDG 120

Query: 121 SSEISFEEKPALPRTRNRPKREAEV 146
           SSEISFE KPALPRTRNRPKREAEV
Sbjct: 121 SSEISFEGKPALPRTRNRPKREAEV 145

[Close]
BLAST of Lag0029477 vs. NCBI nr
Match: KAG6601944.1 (hypothetical protein SDJN03_07177, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 244.6 bits (623), Expect = 6.6e-61
Identity = 132/145 (91.03%), Postives = 137/145 (94.48%), Query Frame = 0 

Query: 1   MSIPIPNTSIPMARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVV 60
           M+ PIP TS  MARLLISTR FPFPPLP+ PARA FRP +LSPAVRFSGDPSA+RALRVV
Sbjct: 1   MASPIPYTSEAMARLLISTRAFPFPPLPLVPARACFRPSKLSPAVRFSGDPSAARALRVV 60

Query: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDG 120
           TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI+EEDEENKDG
Sbjct: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIMEEDEENKDG 120

Query: 121 SSEISFEEKPALPRTRNRPKREAEV 146
           SSEISFEEKPALPRTRNRPKREAEV
Sbjct: 121 SSEISFEEKPALPRTRNRPKREAEV 145

[Close]
BLAST of Lag0029477 vs. NCBI nr
Match: XP_022961614.1 (uncharacterized protein LOC111462310 [Cucurbita moschata])

HSP 1 Score: 244.2 bits (622), Expect = 8.6e-61
Identity = 131/144 (90.97%), Postives = 136/144 (94.44%), Query Frame = 0 

Query: 1   MSIPIPNTSIPMARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVV 60
           M+ PIP TS  MARLLISTR FPFPPLP+ PARAFFRP +LSPAVRFSGDPSA+RALRVV
Sbjct: 1   MASPIPYTSEAMARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVV 60

Query: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDG 120
           TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI+EEDEENKDG
Sbjct: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIMEEDEENKDG 120

Query: 121 SSEISFEEKPALPRTRNRPKREAE 145
           SSEI FEEKPALPRTRNRPKREAE
Sbjct: 121 SSEIPFEEKPALPRTRNRPKREAE 144

[Close]
BLAST of Lag0029477 vs. NCBI nr
Match: XP_023525740.1 (uncharacterized protein LOC111789252 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-59
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 0 

Query: 12  MARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVVTTRAGASTSSY 71
           MARLLISTR FPFPPLP+ PARAFFRP +LSPAVRFSGDPSA+RALRVVTTRAGASTSSY
Sbjct: 1   MARLLISTRAFPFPPLPLVPARAFFRPSKLSPAVRFSGDPSAARALRVVTTRAGASTSSY 60

Query: 72  IFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDGSSEISFEEKPA 131
           IFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI+EEDEENKDGSSEISFEEKPA
Sbjct: 61  IFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIMEEDEENKDGSSEISFEEKPA 120

Query: 132 LPRTRNRPKREAEV 146
           LPRTRNRPKREAEV
Sbjct: 121 LPRTRNRPKREAEV 134

[Close]
BLAST of Lag0029477 vs. NCBI nr
Match: XP_022990673.1 (uncharacterized protein LOC111487491 [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0 

Query: 1   MSIPIPNTSIPMARLLISTRTFPFPPLPIAPARAFFRPCRLSPAVRFSGDPSASRALRVV 60
           M+ PIP TS  MARLLISTR FPF   P+ PARAFFRP +LSPAVRFSGDPSA+R LRVV
Sbjct: 1   MASPIPYTSEAMARLLISTRAFPF---PLVPARAFFRPSKLSPAVRFSGDPSAARTLRVV 60

Query: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAILEEDEENKDG 120
           TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAI+EEDEENKDG
Sbjct: 61  TTRAGASTSSYIFAFSIPFSLILVTALTALKIGDNLDKKFLEELALNQAIMEEDEENKDG 120

Query: 121 SSEISFEEKPALPRTRNRPKREA 144
           SSEISFEEKPALPRTRNRPKREA
Sbjct: 121 SSEISFEEKPALPRTRNRPKREA 140

The following BLAST results are available for this feature:
BLAST of Lag0029477 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7032638.15.0e-6191.03hypothetical protein SDJN02_06688 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6601944.16.6e-6191.03hypothetical protein SDJN03_07177, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022961614.18.6e-6190.97uncharacterized protein LOC111462310 [Cucurbita moschata][more]
XP_023525740.12.1e-5994.78uncharacterized protein LOC111789252 [Cucurbita pepo subsp. pepo][more]
XP_022990673.17.5e-5788.81uncharacterized protein LOC111487491 [Cucurbita maxima][more]
BLAST of Lag0029477 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..137
NoneNo IPR availablePANTHERPTHR37753OS01G0940600 PROTEINcoord: 12..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029477.1Lag0029477.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane