Lag0029384 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029384
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 38425017 .. 38428815 (-)
RNA-Seq Expression	Lag0029384
Synteny	Lag0029384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTTCTCAAGATTTCCTTTGCTTTGAAGCTGCTGCTTTTCTTCGCAGTGCTTCTCTTGATTTCCTCTACTGTTTCTGCAATGGATAACACTGCGTTTCAAAAACCTCGCATTCGTAAGTGCTTTTTTGTTTTTTTTTCTGTTTTCTACTCTCTCAGGAGTGATTTTAGTTTTGAATAAACTATGCTATGCTTGGGTGGGTTTTTGTCATTGTTGTCAATTATACCCACTTTCAAAAGTTTCATTTTAGCTCTCGTAATTTGAAGTTTGTTTCAAAACGACTCTGGAAAATATTTTACGTTATATTTATTGACAAAAAATGATGGGTTTGCATGTTTTTTTTATTGTTCTTTTCAAATATTTGTTCAAATCTATTCACTTAAGGCAATGCCATTTTCCGTCCATGAATTTAACGAAAAAAAATGTCATTTTGAAACAAGCTTTAAACTTCAAGGACTAAAATGAAACTTTTGAAAGTTCAAAGCTTCGGATTCCTCCCCAAATGTTGTTGCTAAAAAAAACTATAATTTTTCAATAAATAAATATAATGTTGATATTTAATTTCAAATGTTTATAAGATAATTTCAAAATTATTATAAGATAATTATTTTAAATTTCATATGATTTACCATATAATTTTGTGTTTATTCTAGGATATTCTTATATTTTGATAAGAAATATAATTTATTACTTGTATTGAAAAAAATATTATTTTAATTTAAATAAAAAATAAAAACAAATAATTTCAATTGAGTATAAGATAAGAATAAAAAATTTTAACTTAGAATTAACAAAATATATATATATATATATATAGACCATAAATCACGTCTCAACAACTTGTAGACTTGGAAGATATTTAAGTTACAAATCAATTTTTTTAGGAAAGCGCTAAAGCTACAATTATTAGATTTTGCCAATCATCGTCAACCTAGTTGAAAATTTATAATTTGTTTTACCAGATACTAAAAACGGTTAAGATTCTTTTTTAATCATTTCAACATCCTCCCTGATCCATGCTAAACACACCCTAGTTTCTATTTGATGTTTCTAAGTTTTTTAGTGACCTTTTTGGTTTGTGAGAGGAGTCTATATGTATAAAAAAAACAAATTCAAACTCATTTAAAAATACAAATTAGTAATGTTTTAGTTAGGATGTTTTGTTATATAAATTACCTAGCAACTCTCAGAAGTTAATTTCTTGAAAAGAAAAATAAAACTCTCAGAACAGAAGATAAAATTTAAGCCTTGATAAATAAACTTGTCACTATTGAAATCTCTCCAAAGACAAAATAGAAACTAAATATACACAATGGTTCTTGATTTGAAGGCTTTTTTTTCCTTTTAAACTTTTCAATTTTACTTTCAATATATTAAAACACTAAATTAGGTTCTTACCTAAAAAAATGGATTTTGCTTAATTGATGGGTCAAATATATAAAACTTATTGATAGGTTGAGTTTTATGTGTCAAGTAATTAACATGTGAGTTTCACATGTCTAAATATGTCAATAAAATAATTTAATGAGTATTATCAACTTTTTATTCATAAATTTTAACAAAACTCTGATGGAGAGAAGGACCAAACTGAGGATGTTTATAAAGGTAAAATCAAGCTTGACTAAAAGGACAAAAGACTCGTCTCGTATATTTGATTTTAGCTTTTTGTACTTGATATAAAATTTAAGCCATCTATTTCTACCCTCAATACCAAATTGGTTTAACGACGAGATTTGAACTTTTGGTCTCTTGATTGAAGACATGATATATCTAAACGAGTTAAACTATGTTTAAATTAACCAATTACTCAATTCAAACTATTTATGAAATGATTTTGGTTAGTTGCAACGTATATAAATTTAATGAGGACAAAAGACAAATTCTTATCCTAAGCCTTAGAGCTGGTGTACATGCATGTATATCAAGATTGAGAATAGAAAGAAATGTTGTTTGTTAGTTGCCAACTTGGGCTTTAAGAATATCCTATATTGGATTGTTTGGTAGCAAAATTCTTAAGAAGAATAAAAAAAGAAAAAAAAAAAAGAGAGTATACAGTTATTATATACTTAAAAATTCTTTTTTAAAACATTGTTTTAAATTTACAATTAAGCACTTGAAAAGTTAAACAAAGTATGTACCTAAAATTGCCTCATATATTTCTTTTCCAAGAAAAAAAAAATGTTTCCTTCACCTCTTTATATGTTTAATTACCCATAAAGTGTTTGAATCAGTTTACATGATCTTATAAAACAAGAGTATAACTTACAAGATTGTTGGTAAATTTGTAGGATTTTAATAATTTGGTTAAATTGCTTTAAGGTCTATGTCTATTTGGCTCCTGTAATTTTACAAATATCTAATAAGTCTCTAAGGTTTCAAATTTTGTTTGCAATAAGTTTCTAAACTTTAAAAAATGTCTAATAGGTTCTTAAACTTTCAAATTTGTGTCTAATATGTTATTGAATTTTCAATCTTGTGTCTAATGAATTCTCGACCTATTTGACATATATTTTTGAAATTTCAAAATCTACTAGACACAAAATTGATAAAGTTGAGAGTCTTAGAGTCTTATTAGATATAAAATTAAAATTTTATATCTAATATAGATCAGTTAATTTAAAAATTTTCAGATATGTCAGGCAACTATTAGATATAGAAAAAAAAAATCAGGAACCTATTAGACAGTTTTTAAAGTTAAGAGATATTTTAGACATAAATTTAAAAATTCAAAGACCAAACTTATAAAATTTGAACATACACACACGTGTAACTTTGGTTAATTAGAGGTCTTCTCACGAGATTATTGTTGTTCGTCGCGATCCCTATAACTCTTCTCGCGAAGGAGAGACAAATTAAACTCTCTTTTCTTTATGGATCTTTTTTTTTTTTTTTTTTTGTTCAAAAAAAAAAAAAGGAAACATCATCAAAGTTAATTTGGTAACAATTGATTCATTTTAATTTTTGGTGTTCTTAAAGGTAAGGTGGCCATGGAGTATAGAACCGTTGGGAAAGCAGAGATGGTAGCAAAGCCAACACAGTATGATTTGCCATGGAAGGGTGGTTATTTCAAACCTCCAAAGAACAACCGTTGATGATCTTTTCAAAAGTGTTTTATTTACTTTTGTGGGTTAATGAAGAAAAAAGAATTATGTTGTATGTGTGTCTGTCTTTACAACATGTGTGGAGGGGAATTGAACCTCTGACCTCTTGGTCGAGGTATAAGTTTTATGTCAGTTGAGACTCTTATCGGCAACTTTCCCTTCTTATATTGATAACAAATTATGATGTCGTTGTATTATTTTTCAGTCCGACGAGAAATATGTGCAATTGTCGTGACAATCATTTTAAACGACCTAACCAAAATGAAGAGTGCTAATTTATTATTTTTTTTTACTCAATATAAATAAATTTTTTAATATAAAATGAAGAGTGTTTAAAAAAATATTTTTTTAATTACGTTGTCCCTACTTTATTTTTAAATTTACAAGCATGCTATCGACATTAATTAATAATAATTGTTATAGGTAATTTTGGACCACCCCGATGCACAAGAAACTGACAAGGACAACCGAGCAGGAATCAGACCGAAAGATGGACCCAAGAGGCGAAACCGGCTAGCAGGACGGGCCAAGAAAGGCCCGACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGAGCCTCATGGTCGGCCTCGAAGCCGAGCCCATCGGGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCCGGATCCGCCTGGTTTGCCCCGAAGCGCCTCCGAACTCCTAAAAAACCCTAG

mRNA sequence

ATGGCTTTTCTCAAGATTTCCTTTGCTTTGAAGCTGCTGCTTTTCTTCGCAGTGCTTCTCTTGATTTCCTCTACTGTTTCTGCAATGGATAACACTGCGTTTCAAAAACCTCGCATTCGTAAGGTGGCCATGGAGTATAGAACCGTTGGGAAAGCAGAGATGGTAGCAAAGCCAACACAGAATCAGACCGAAAGATGGACCCAAGAGGCGAAACCGGCTAGCAGGACGGGCCAAGAAAGGCCCGACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGAGCCTCATGGTCGGCCTCGAAGCCGAGCCCATCGGGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCCGGATCCGCCTGGTTTGCCCCGAAGCGCCTCCGAACTCCTAAAAAACCCTAG

Coding sequence (CDS)

ATGGCTTTTCTCAAGATTTCCTTTGCTTTGAAGCTGCTGCTTTTCTTCGCAGTGCTTCTCTTGATTTCCTCTACTGTTTCTGCAATGGATAACACTGCGTTTCAAAAACCTCGCATTCGTAAGGTGGCCATGGAGTATAGAACCGTTGGGAAAGCAGAGATGGTAGCAAAGCCAACACAGAATCAGACCGAAAGATGGACCCAAGAGGCGAAACCGGCTAGCAGGACGGGCCAAGAAAGGCCCGACCCCCTGCTCGGCCTCGGCCCAAGGCCGAGGCCGAGCCTCATGGTCGGCCTCGAAGCCGAGCCCATCGGGCCCCGTTTGGTCCCTGTAGCCTCTAGCCGCCCCGGATCCGCCTGGTTTGCCCCGAAGCGCCTCCGAACTCCTAAAAAACCCTAG

Protein sequence

MAFLKISFALKLLLFFAVLLLISSTVSAMDNTAFQKPRIRKVAMEYRTVGKAEMVAKPTQNQTERWTQEAKPASRTGQERPDPLLGLGPRPRPSLMVGLEAEPIGPRLVPVASSRPGSAWFAPKRLRTPKKP

Homology

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BLAST of Lag0029384 vs. NCBI nr
Match: KAG6600177.1 (hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0


Query: 6  ISFALKLLLFFAVLLLISSTVSAMDNTAFQKPRIRKVAMEYRTVGKAEMVAKPTQ 61
          ISF LKLL+ FA LLLI+S +SAMDNT    PRIRK+ MEY+ VGKA +VAKP +
Sbjct: 7  ISFVLKLLVCFA-LLLIASPISAMDNT----PRIRKMGMEYKLVGKAVVVAKPVR 56

The following BLAST results are available for this feature:

BLAST of Lag0029384 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6600177.1	3.2e-04	65.45	hypothetical protein SDJN03_05410, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Lag0029384 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..89
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029384.1	Lag0029384.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane