Lag0029262 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029262
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr8: 37011658 .. 37012026 (-)
RNA-Seq ExpressionLag0029262
SyntenyLag0029262
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGGAGGTTTACTCAAAGGACTCTTTTTGGAGAAAAGTGATTATTAGCATTCATGGGGAGGATCCTTATGGTTGGAAATCTGGCAACATCTCGCCTAGAAATAAAAGTAGCCCCTGGACTGAAATTGCTAAACACTATAATGCCTTCAATCAATTTGTTCGGTTTTCCCTTAATTGTGGGAAAAACATTAGATTTTGGGAAGATAAATGGTGCGATAATGTCCCCCTCCAAACAGCCTTTCCGGACCTCTATATGTTGTCTGGGAAGAAAGGCGCCTCTATTTTCGACTGCTGGGATCATGGTCAGCAAACGTGGGATCTAGCTCTCTGTAGAGGTTTGTTCGACAGGGAGCTTGATAGCTAG

mRNA sequence

ATGGCTCTGGAGGTTTACTCAAAGGACTCTTTTTGGAGAAAAGTGATTATTAGCATTCATGGGGAGGATCCTTATGGTTGGAAATCTGGCAACATCTCGCCTAGAAATAAAAGTAGCCCCTGGACTGAAATTGCTAAACACTATAATGCCTTCAATCAATTTGTTCGGTTTTCCCTTAATTGTGGGAAAAACATTAGATTTTGGGAAGATAAATGGTGCGATAATGTCCCCCTCCAAACAGCCTTTCCGGACCTCTATATGTTGTCTGGGAAGAAAGGCGCCTCTATTTTCGACTGCTGGGATCATGGTCAGCAAACGTGGGATCTAGCTCTCTGTAGAGGTTTGTTCGACAGGGAGCTTGATAGCTAG

Coding sequence (CDS)

ATGGCTCTGGAGGTTTACTCAAAGGACTCTTTTTGGAGAAAAGTGATTATTAGCATTCATGGGGAGGATCCTTATGGTTGGAAATCTGGCAACATCTCGCCTAGAAATAAAAGTAGCCCCTGGACTGAAATTGCTAAACACTATAATGCCTTCAATCAATTTGTTCGGTTTTCCCTTAATTGTGGGAAAAACATTAGATTTTGGGAAGATAAATGGTGCGATAATGTCCCCCTCCAAACAGCCTTTCCGGACCTCTATATGTTGTCTGGGAAGAAAGGCGCCTCTATTTTCGACTGCTGGGATCATGGTCAGCAAACGTGGGATCTAGCTCTCTGTAGAGGTTTGTTCGACAGGGAGCTTGATAGCTAG

Protein sequence

MALEVYSKDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNIRFWEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWDHGQQTWDLALCRGLFDRELDS
Homology
BLAST of Lag0029262 vs. NCBI nr
Match: XP_022158566.1 (uncharacterized protein LOC111025019 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 3.9e-25
Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 0

Query: 8   KDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNIRF 67
           +++ WR+VI SI+G D YGW +     + K  PW +IAK+ +AF + V F  N G  + F
Sbjct: 256 ENALWRRVIASIYGVDKYGWLTKAPKGKAKGRPWFDIAKNLSAFQEMVVFKANQGDRLSF 315

Query: 68  WEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWDHGQQTWDLALCRGLFD 118
           W DKW  N+PL   FPD++ LS K+ A + DCW+   QTWDLAL RGLFD
Sbjct: 316 WMDKWAGNLPLLDEFPDMFALSLKQNAYVKDCWNEENQTWDLALRRGLFD 365

BLAST of Lag0029262 vs. NCBI nr
Match: RVX06643.1 (SUN domain-containing protein 1 [Vitis vinifera])

HSP 1 Score: 98.2 bits (243), Expect = 5.2e-17
Identity = 42/118 (35.59%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 6   YSKDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNI 65
           + KD+ W+KVI+  +G++ +GW++   S       W EI K  N   + + F +  G  +
Sbjct: 619 HEKDNLWKKVILVKYGQEGFGWRTNEASGTFGMGVWKEILKETNWCWENLEFKVGKGTKV 678

Query: 66  RFWEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWD--HGQQTWDLALCRGLFDRELD 122
            FW D+WC N  L  +FP LY L+  + A++ + WD   GQ  W+L   RG  D ELD
Sbjct: 679 NFWTDRWCGNATLSQSFPQLYALAVHRNATVNEVWDSNFGQGGWNLRFSRGFNDWELD 736

BLAST of Lag0029262 vs. NCBI nr
Match: RVW55455.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 95.5 bits (236), Expect = 3.3e-16
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 0

Query: 8    KDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNIRF 67
            +D+ W++VI + +G++ YGW++  +S       W EI K  +   + + F +  G  I+F
Sbjct: 950  RDNLWKQVISTKYGQEDYGWRAKKVSGAAGVGVWKEIMKESDWCWENLSFLVGKGSKIKF 1009

Query: 68   WEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWDH--GQQTWDLALCRGLFDRELD 122
            W+D+WC N PL   F  L++L+  + ASI + WDH  GQ  W+L   R   D ELD
Sbjct: 1010 WKDRWCTNTPLSQCFNHLFVLAVHRDASIEEMWDHHSGQGDWNLIFERDFNDWELD 1065

BLAST of Lag0029262 vs. NCBI nr
Match: RVW37603.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 95.1 bits (235), Expect = 4.4e-16
Identity = 40/118 (33.90%), Postives = 67/118 (56.78%), Query Frame = 0

Query: 7   SKDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNIR 66
           +K+  W++V+++ +G++ +GW++   +       W EI K  N     + F +  G  IR
Sbjct: 158 AKEEMWKRVLVAKYGQEEFGWRTKKANGAFGVGVWKEILKEANWCWDKMTFKVGKGTKIR 217

Query: 67  FWEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWDH--GQQTWDLALCRGLFDRELDS 123
           FW+D WC +V L   FP L+ ++ ++ A++ D WD   GQ  W+L L RG  D EL+S
Sbjct: 218 FWKDPWCGDVELARRFPQLFNVAAQRSATVGDLWDQNSGQGGWNLRLIRGFNDWELNS 275

BLAST of Lag0029262 vs. NCBI nr
Match: RVW28288.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 94.7 bits (234), Expect = 5.7e-16
Identity = 42/116 (36.21%), Postives = 66/116 (56.90%), Query Frame = 0

Query: 8    KDSFWRKVIISIHGEDPYGWKSGNISPRNKSSPWTEIAKHYNAFNQFVRFSLNCGKNIRF 67
            +D+ W++VI + +G++ YGW++  +S       W EI K  +   + + F +  G  I+F
Sbjct: 1018 RDNLWKQVISTKYGQEDYGWRAKKVSGAAGVGVWKEIMKESDWCWENLSFLVGKGSKIKF 1077

Query: 68   WEDKWCDNVPLQTAFPDLYMLSGKKGASIFDCWDH--GQQTWDLALCRGLFDRELD 122
            W+DKWC + PL   F  L++L+  + ASI + WDH  GQ  W+L   R   D ELD
Sbjct: 1078 WKDKWCTDTPLSQCFNHLFVLAMHRDASIEEMWDHHSGQGDWNLIFERDFNDWELD 1133

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158566.13.9e-2548.18uncharacterized protein LOC111025019 [Momordica charantia][more]
RVX06643.15.2e-1735.59SUN domain-containing protein 1 [Vitis vinifera][more]
RVW55455.13.3e-1636.21Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW37603.14.4e-1633.90putative ribonuclease H protein [Vitis vinifera][more]
RVW28288.15.7e-1636.21LINE-1 retrotransposable element ORF2 protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029262.1Lag0029262.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050896 response to stimulus
molecular_function GO:0005488 binding
molecular_function GO:0003824 catalytic activity