Lag0029185 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029185
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr8: 36192010 .. 36197155 (+)
RNA-Seq Expression	Lag0029185
Synteny	Lag0029185

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAGTCTAAACGGATCCACTGGGTGAGCTGGGACTCTCTCTGTTGTCCTAAATGCCTTGGTGGACTTGGTTTCAGAGATATGAAGCTTTTTAACCAGGCTCTTTTAACTAAGCAGTGTTGGCGCTTGTTCAGAGACCCATCCTCCTTCATGATCTCGGTACTTAAGGGGAGGTATTTCCCGAACTTTGATTTCTTTGAGACGGGTTTAGGCCATCGTCCTTCATATATTTGGAGGAGTTTGCTGTAGGGTCGAGATTTGTTGGAAAGGGATTGTCGTTGGCGAATAGGTAATGGGTTATCTGCCCTATCTATTTTTTCTAATTGGCTCCCTAACAACTTTTCACTACAGGTTCACTTCGTTCCCTCCTTGCCGCTGACTAGTTGTGCTCGGGATCTGTTCTCTGATACAGGGCAATGGGATGGGCCGAAAATTTGGAGCCACTTTACTATTGCAGATAGTGAAGCCATTCTGAGAAGACCACTTGGGAATATGTTAATGGAGGACTGTCTGATTTGGCATTTCGAGAAAAATGGGCTCTTTTCTGTCAAAAGTGGGTACCTTTGGCTCACAACTTGAAATTTCAAGACCGCCCCTCGTCTTCAAATACGGCCTAGTGGCGTGGTTGGTGGGCTAGCCTATAGAAGATGAATATCCCCAACAAAATAAAGCTCTTTCTATGGAGGCTATCCCATAATCATCTGCCTACCAAGGAAAATTTGCTTAGAAGAGGTATAAATGTTTCTAACTTGTGCGTTATATGCCATTCATCTCCTGAAAATTGTTTACATGTTTTTTGGGACTGTCCTGTGGTCAAATCTATGTGGCTTGGTTCTAAGTTTGCTTCCTTATACCTTTCTAGTGTGGGAACAAACTTTGATTCTTTGTTGTGGGCTGTTAAGGAAAGGCTATGTCCAGGATTTTGAGCTTATTACTGTTTTTTGGTGAGCTTATTACGACCTAGTGGCGTGGTTGGTGGGCTAGCCTATAGAAGATGAATATCCCAACAAAATAAAGCTCTTTCTATGGAGGCTATCCCATAATCGTCTGCCTACCAAGGAAAATTTGCTTAGAAGAGGTATAGATGTTTCTAACTTGTGTGTTATATGTCATTCATCTCCTGAAAATTGTTTACATATTTTTTGGGACTGTCCTGTGGTCAAATCTATGTGGCTTGGTTCTAAGTTTGCTTCCTTATACCTCTCTGGTGTGGGAACAAACTTTGATTCTTTGTTGTGGGCTGTTAAGGAAAGGCTATGTCTAGGATTTTGAGCTTATTACTGTTTTTTGGTGGGCTATCTGGAATTTTCGTAACTCTCTGTACTGGGGCGGGTCTGTGGATGACACAAATTTGATGGATTGGGTCGCTGTTTATCTCTCCTCGTTTCAGCAGGTAGTGTCGCCTGGGGTTGTGGTCTCGGTTGATGAGGGACAATAGCTGAGAGCTGCTATTGTGTGTGTGGAGGCTACCTAGTGAGAATGAGTTGAAACTAAATACAGATGCGTCGGTGAGGGCTGGTTGTGGTACGCAGGGGGCGGTTCTATTATGAGAAATGGGAGGGGCGAGGTGCTGCTGTCAGCAGGCTTTGTTCTACCGAACTGTTGGAATGTTGATCTAGCTGAAGCGTGGGCAATGTTGAGGGGCATCGAAATTGCTCGTCAAATGGGCTTCTCTCGGTTCCATATGGAGACCGACTCCCTAAGGTTAGCCAGATTATTAAATGAGAAGGTGAATGACGTATTAGAAGTGGAAATTATGATGAATATGATTCGTGATCTCCTCCATCAAGATACCTCTTGCAGAGTTTTTTTCACGCCTAGAAAAGGCAACATGGCTCCTCATGTAATGACATCTTTAGCTTTCACTTATGCAGATTTTATTTGGCTTGAAGAATGGCCTTTTGAGGTCTCTGATGTAATCTGTCGTGAGTTTTCTTCTTTATGAAATGACTGTCATTTGATCTAAAAAAAAAAAAGTCCTAATGTGTTGAGTTGTTATTATTTCCATTTAGATCCTATTCTTTTAAAAAGTTTCAAACTAATCTCTTATATGTTTCGACATTTTACAATTTAGACACTAACTGTTGGCTTCGGTAAAATTACTTGGCACATATTGGAGAGGAGGAAAAAATTAAAGTTTCTAATTCTTCCAAAATTCTAATAATTTGGTAGAAATTTCATATATATTCTTCTTGTAGATGAAATAAGTTTATTATCAACCAATTTTAATGTCCACCAATAGTGAGAGACAAAATTGAAAAATGTTAATAGATAGGAGACTGCATAGCAAGGACCAAATTGAAAAAGTACCAAAACATCAGCTAAAAGTAAAACATATATTCAGTAAAAAAGTGCAATAATATTTAAAGATAAAGATAATTTATTAATTAAATTTTTAAAAAATTATACATTAAGAATGTTATTGAAATTATCGATTGAAGAGCTAAGTTGGACATAACTCAAACGGTTAAAAAACATCATATCTTGAGTCAAAACATCAGAAGTTTGAATTCTTACTCTCAAATGTTGTATTCGAAAAACAATTAATTAAATAGTTGGGATAAAATTGTCCAAAAGTAATTCTCCAACCTTATCCTACCTTTTAATATGACAATGATATTTATTAAAAACTATAATATGGGCTATAATATTCATAAAATTAGTATCATATATATGAATAAATATTTTTTTAGTAAAATTAGAAATACATAGCATAATATATTATAGTTTTATTTAAATAAAATATTTTATTATAATCGAATATTAATAATTTTAGCAAATATTATTTAATAAAATAACATAAGTAATATTTGGAAATATTAAAACACCACAAGTGTGTATATATATAATTATTTTTCTATATTTTTTCAAAAAAAAAAATTTATTTTTCTATATTTCTTTTTAGCTTAACTCTAGCTAGTTTATCTTTCTAGGATTATATTTTTAAATTTATATTTGATTGGGAGAAATATTGAAAAGATTCATACCTTTTTAGACAACTAATATAATAAAATGACAAACTTTAAATTCAACAATTGACTTGATAGAACTAAATAATAAAATAAGTTTATTTATAAATTGCAAGTGGATCTAAAATAATTTTACATCAAAGTCAAATGAAAAAAAAAGAAGATATTTGTAATGGGTGGCAATATCAAGCTAAATAATGGCAAATATAGCATTTATTAAAAATATTTGCAAATATGGCAAAATTTTTGAATTAGTTTTTTATATTCTCATTTTGCCCCTAATTGTGCAGGTTCTCTTTCTTCTTTCTTCTTTTTGTTTGCTTCTCTGTCGTGATCGAAATTTTATTCCGATTTTATTATGGTTTTCTTCTTTCTTCTTTCAGATCGATCAGTTCGATTGTTTTCGATTTCACGGATTTCATAGATTTTATTTTGATCGATTGTTTTCTGATCGAGTATCGACGCCTCTTCCGGTCGCCGGATTTTAGAGATCTCGCTGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTCATCGAAAGGATCTTTTGGATCTCAGATTTTACCGAGAAGGTTTGGATTTCATCGGTTTTGCTTACGATCATGTAGAGTCTGTAGATTCTGAATGTGGTGATCTTTTTGTCTTTTGCTTTAACTGCAATGGAAATAAATCCTTTCTTGTTCGCCGTTGATTAGGAAAAAGAGAACCAATAGAAAACCCACCGATTTAATTCTATTTCTATCACAGATTGTTGTGTTTGCTACAAAATTCAAAACTTTCTTTTTGCCAAAAGAAAAAAGACGAAAAAAAGCCCATACACCAAAATATAAAGAAAAAAGAAAGATGATTGTTAATTATAATGGAGAGAGGGAAGATGAGAGATTCTTAATTCTTGGGTGACTACACAGAAAAGAGAAATTATAATGGCAGTAAGTTAAAAGTTTGTTGTAAATTATTCTATCAGTGATAGAAAGCCTTTCTATCAGTGATAGAAAACCTTCTATCAGGCCTTTCTATCACTGATAGAAAGGCTTTTCTATCACTTTCTATCACTGATAGAAGGCTTTCTATTAGTGATAGAAAGGCTTTTCTATCACTTTCTATCACTGATAGAAAAGCCTTTCTATCACTGATAGAAAGCCCATACACCATATCAGATGAAGTTTTCACTCTCTTCTTTTTTGATTTGGTAGGTTTCCATCAGTGATAGAAAAACTTTCTATCAGTGATAGAAATCTTCTATCACTGATAGAATTAACTTTCTATTGCTGATAGAAATCTTCTATCATTGATAAAAACTAGAAAGTTTTCTATCAATGATAGAATATTATTCTATCACTGATAGAAACTTTCTATTAGTGATAGAATTAACTTTCTATCAGTTATAGAAATCTTCCATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAATGTTCTATCATTAATAGAAAACTTTCTATCACTGATAGAAACTTTCTATTAGTGATAGAATTAACTTTCTATCAGTGATAGAAATCTTCCATCACTGATAGAAAATTTTTCTATCACTGATAGAATCTATCAGTGATAGAAATGTTCTATCATTGATAGAAAACTCTCTATCACGGATAGAAACTTTCTATTAGTGATAGAATTAACTTTCTATCAGTGATAGAATTAACTTTTTATCTATCAGTGATAGAAAAAATTTTCTATCAGTGATAGAAAACTTTTTATCATGATAGAATTCTGATAGAAAGTTTCTATCAGTGATATAAAAGTTTTCTATCAGTGATAGAAAATTTCTATCACTGATAGAAATTTGGGTGGGCTCAAAATTGCATCCCTCCGATGAAATCGAAATCCTCCGCCATCGCTGCCCGATCATCCAAATCCCTAATCCCTCAAAAAATCAATATCACGTAGCTAATCCCAAACTCCGCTCTCTATTTAACCCCCCCGACTCTGTTGACCTTGGGATTGCCCGTCGGAAACTCGATCTCGAGGCGGAAGATCCAAGCGTGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTGGAGGAATCGAAATTCGAGCGACGATAAAGATCAGGAAGAAGAGGAAGGAGAAGTTGACTGAAAAACTTTCTATCATTTCTATCACTGATAGAAAAACTTTCTATCAATGA

mRNA sequence

ATGGGGGAGTCTAAACGGATCCACTGGGTGAGCTGGGACTCTCTCTGTTGTCCTAAATGCCTTGGTGGACTTGGTTTCAGAGATATGAAGCTTTTTAACCAGGCTCTTTTAACTAAGCAGTGTTGGCGCTTGTTCAGAGACCCATCCTCCTTCATGATCTCGGTTCACTTCGTTCCCTCCTTGCCGCTGACTAGTTGTGCTCGGGATCTGTTCTCTGATACAGGGCAATGGGATGGGCCGAAAATTTGGAGCCACTTTACTATTGCAGATAGTGAAGCCATTCTGAGAAGACCACTTGGGAATATGTTAATGGAGGACTGTCTGATTTGGCATTTCGAGAAAAATGGGCTCTTTTCTGTCAAAAGTGGATGCGTCGGTGAGGGCTGGTTGTGGTACGCAGGGGGCGGTTCTATTATGAGAAATGGGAGGGGCGAGGTGCTGCTGTCAGCAGGCTTTGTTCTACCGAACTGTTGGAATGTTGATCTAGCTGAAGCGTGGGCAATGTTGAGGGGCATCGAAATTGCTCGTCAAATGGGCTTCTCTCGGTTCCATATGGAGACCGACTCCCTAAGATCGATCAGTTCGATTGTTTTCGATTTCACGGATTTCATAGATTTTATTTTGATCGATTGTTTTCTGATCGAGTATCGACGCCTCTTCCGGTCGCCGGATTTTAGAGATCTCGCTGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTCATCGAAAGGATCTTTTGGATCTCAGATTTTACCGAGAAGTGATAGAAAATTTCTATCACTGATAGAAATTTGGGTGGGCTCAAAATTGCATCCCTCCGATGAAATCGAAATCCTCCGCCATCGCTGCCCGATCATCCAAATCCCTAATCCCTCAAAAAATCAATATCACGTAGCTAATCCCAAACTCCGCTCTCTATTTAACCCCCCCGACTCTGTTGACCTTGGGATTGCCCGTCGGAAACTCGATCTCGAGGCGGAAGATCCAAGCGTGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTGGAGGAATCGAAATTCGAGCGACGATAAAGATCAGGAAGAAGAGGAAGGAGAAGTTGACTGAAAAACTTTCTATCATTTCTATCACTGATAGAAAAACTTTCTATCAATGA

Coding sequence (CDS)

ATGGGGGAGTCTAAACGGATCCACTGGGTGAGCTGGGACTCTCTCTGTTGTCCTAAATGCCTTGGTGGACTTGGTTTCAGAGATATGAAGCTTTTTAACCAGGCTCTTTTAACTAAGCAGTGTTGGCGCTTGTTCAGAGACCCATCCTCCTTCATGATCTCGGTTCACTTCGTTCCCTCCTTGCCGCTGACTAGTTGTGCTCGGGATCTGTTCTCTGATACAGGGCAATGGGATGGGCCGAAAATTTGGAGCCACTTTACTATTGCAGATAGTGAAGCCATTCTGAGAAGACCACTTGGGAATATGTTAATGGAGGACTGTCTGATTTGGCATTTCGAGAAAAATGGGCTCTTTTCTGTCAAAAGTGGATGCGTCGGTGAGGGCTGGTTGTGGTACGCAGGGGGCGGTTCTATTATGAGAAATGGGAGGGGCGAGGTGCTGCTGTCAGCAGGCTTTGTTCTACCGAACTGTTGGAATGTTGATCTAGCTGAAGCGTGGGCAATGTTGAGGGGCATCGAAATTGCTCGTCAAATGGGCTTCTCTCGGTTCCATATGGAGACCGACTCCCTAAGATCGATCAGTTCGATTGTTTTCGATTTCACGGATTTCATAGATTTTATTTTGATCGATTGTTTTCTGATCGAGTATCGACGCCTCTTCCGGTCGCCGGATTTTAGAGATCTCGCTGGAAAGAAAATTCGAAAGTTACAGTCGGTTTGGATTTCATCGAAAGGATCTTTTGGATCTCAGATTTTACCGAGAAGTGATAGAAAATTTCTATCACTGATAGAAATTTGGGTGGGCTCAAAATTGCATCCCTCCGATGAAATCGAAATCCTCCGCCATCGCTGCCCGATCATCCAAATCCCTAATCCCTCAAAAAATCAATATCACGTAGCTAATCCCAAACTCCGCTCTCTATTTAACCCCCCCGACTCTGTTGACCTTGGGATTGCCCGTCGGAAACTCGATCTCGAGGCGGAAGATCCAAGCGTGGCTGCTTCACCATCGGGAAGAAGAGATGGCAATAAGTCTGGAGGAATCGAAATTCGAGCGACGATAAAGATCAGGAAGAAGAGGAAGGAGAAGTTGACTGAAAAACTTTCTATCATTTCTATCACTGATAGAAAAACTTTCTATCAATGA

Protein sequence

MGESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMISVHFVPSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLFSVKSGCVGEGWLWYAGGGSIMRNGRGEVLLSAGFVLPNCWNVDLAEAWAMLRGIEIARQMGFSRFHMETDSLRSISSIVFDFTDFIDFILIDCFLIEYRRLFRSPDFRDLAGKKIRKLQSVWISSKGSFGSQILPRSDRKFLSLIEIWVGSKLHPSDEIEILRHRCPIIQIPNPSKNQYHVANPKLRSLFNPPDSVDLGIARRKLDLEAEDPSVAASPSGRRDGNKSGGIEIRATIKIRKKRKEKLTEKLSIISITDRKTFYQ

Homology

[Close]

BLAST of Lag0029185 vs. NCBI nr
Match: ONI09819.1 (hypothetical protein PRUPE_4G011200 [Prunus persica])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-22
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 785 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 844

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 845 SVPFLEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSP 904

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +AIL+ PL ++   DCLIWH+E+NG++
Sbjct: 905 PQLPLSTRVCDLFTSSGQWNVPLLKDIFWDQEVDAILQIPLASLAGHDCLIWHYERNGMY 964

[Close]

BLAST of Lag0029185 vs. NCBI nr
Match: ONI01138.1 (hypothetical protein PRUPE_6G123900 [Prunus persica])

HSP 1 Score: 117.5 bits (293), Expect = 2.6e-22
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 498 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 557

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 558 SVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSP 617

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +AIL+ PL ++   DCLIWH+E+NG++
Sbjct: 618 PQLPLSTRVCDLFTSSGQWNVPLLKDIFWDQEVDAILQIPLASLAGHDCLIWHYERNGMY 677

[Close]

BLAST of Lag0029185 vs. NCBI nr
Match: VVA32947.1 (PREDICTED: retrotransposon [Prunus dulcis])

HSP 1 Score: 115.5 bits (288), Expect = 9.8e-22
Identity = 62/185 (33.51%), Postives = 85/185 (45.95%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 764 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 823

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 824 SVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSP 883

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +A L+ PL ++   DCLIWH+E+NG++
Sbjct: 884 PQLPLSTLVCDLFTSSGQWNVPLLKDIFWDQEVDAKLQIPLASLAGHDCLIWHYERNGMY 943

[Close]

BLAST of Lag0029185 vs. NCBI nr
Match: XP_028954978.1 (uncharacterized protein LOC108172663 [Malus domestica])

HSP 1 Score: 111.3 bits (277), Expect = 1.8e-20
Identity = 75/227 (33.04%), Postives = 112/227 (49.34%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMISVHFVPSLP 62
           +S++IHW SWD LC  K  GG+GFR++  FN A+L KQ WR+ +DP S   S+     + 
Sbjct: 160 DSRKIHWKSWDKLCLAKPEGGMGFRNLYAFNLAVLAKQGWRILQDPESLTTSI-LKARIV 219

Query: 63  LTSCARDLFSD-------TGQWDGPKIWSHFTIADSEAI-LRRPLGNM-LMED------- 122
           L   +R L  D         QW   +IWS F +     + LR  L ++ L+ED       
Sbjct: 220 LEKLSRWLIGDGASVRVWKDQW--RRIWSIFVLYQLAIVYLRTSLYDITLIEDNSRLKVF 279

Query: 123 -CLIWHFEKNGLFSVKSGCVGEG-----W--LWYA---------GGGSIMRNGRGEVLLS 182
             + W + K    S  S  +G       W  +W A         G G ++R+G+G  L +
Sbjct: 280 MRVAWDYVKPPSLSASSSALGGNSFTPLWKAIWQAGVPPKNKVGGVGVVLRDGQGHFLAA 339

Query: 183 AGFVLPNCWNVDLAEAWAMLRGIEIARQMGFSRFHMETDSLRSISSI 197
           A   LP   +   AE  A+ RG+E+A Q+GF +  + +DS ++IS I
Sbjct: 340 AASFLPTVTSALQAEMLAIKRGVELAHQLGFQKVLVRSDSSQAISII 383

[Close]

BLAST of Lag0029185 vs. NCBI nr
Match: XP_024033483.1 (uncharacterized protein LOC112095606 [Citrus clementina])

HSP 1 Score: 109.0 bits (271), Expect = 9.1e-20
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSS---------FMI 62
           + + IHW  W+ L   KC G +GFRD   FNQAL+ KQ WR+ + P S         F +
Sbjct: 236 DKRSIHWSKWEKLSQAKCKGRMGFRDFSSFNQALVAKQGWRILQFPDSLVAKVLQARFSV 295

Query: 63  SVHFV-----------------------------PSLPLTSCARDLFSDTGQWDGPKIWS 122
            VH +                             PSLP  +   +L ++  QWD  +I+ 
Sbjct: 296 LVHTIIWRIGDGQKIQIHKDNWIPKPSTFKPIVRPSLPEDTLVAELINEENQWDESQIYR 355

Query: 123 HFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLFSVKSG 124
           HF   D++ I+  PL     ED +IWH++K GL+SVKSG
Sbjct: 356 HFNRMDADKIVEIPLPRSPKEDTIIWHYDKKGLYSVKSG 394

[Close]

BLAST of Lag0029185 vs. ExPASy Swiss-Prot
Match: P93295 (Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 GN=AtMg00310 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.1e-06
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 5   KRIHWVSWDSLCCPK-CLGGLGFRDMKLFNQALLTKQCWRLFRDPS---SFMISVHFVPS 64
           ++I WV+W  LC  K   GGLGFRD+  FNQALL KQ +R+   P    S ++   + P 
Sbjct: 37  RKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPH 96

Query: 65  LPLTSCA 68
             +  C+
Sbjct: 97  SSMMECS 103

[Close]

BLAST of Lag0029185 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-05
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSS 51
           E K+ H V W  +C PK  GGLG R  K  N+AL++K  WRL ++ +S
Sbjct: 80  EKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNS 127

[Close]

BLAST of Lag0029185 vs. ExPASy TrEMBL
Match: M5WJW2 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_4G011200 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 785 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 844

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 845 SVPFLEAEVGTNPSFIWGSLQWGKELLNKGVRWRVGSGVSIQVYTDKWLPAPSCFKIMSP 904

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +AIL+ PL ++   DCLIWH+E+NG++
Sbjct: 905 PQLPLSTRVCDLFTSSGQWNVPLLKDIFWDQEVDAILQIPLASLAGHDCLIWHYERNGMY 964

[Close]

BLAST of Lag0029185 vs. ExPASy TrEMBL
Match: M5W5F3 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa026368mg PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 535 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 594

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 595 SVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSP 654

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +AIL+ PL ++   DCLIWH+E+NG++
Sbjct: 655 PQLPLSTRVCDLFTSSGQWNVPLLKDIFWDQEVDAILQIPLASLAGHDCLIWHYERNGMY 714

[Close]

BLAST of Lag0029185 vs. ExPASy TrEMBL
Match: A0A251NPF0 (Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G123900 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.2e-22
Identity = 63/185 (34.05%), Postives = 86/185 (46.49%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 498 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 557

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 558 SVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGSGVSIQVYTDKWLPAPSCFKIMSP 617

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +AIL+ PL ++   DCLIWH+E+NG++
Sbjct: 618 PQLPLSTRVCDLFTSSGQWNVPLLKDIFWDQEVDAILQIPLASLAGHDCLIWHYERNGMY 677

[Close]

BLAST of Lag0029185 vs. ExPASy TrEMBL
Match: A0A5E4FZN9 (PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.7e-22
Identity = 62/185 (33.51%), Postives = 85/185 (45.95%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMI--------- 62
           + + IHWV W+ LC  K  GGLGFRD++ FNQALL KQCWR+ R P S +          
Sbjct: 764 DKRGIHWVKWELLCKSKFAGGLGFRDLEAFNQALLAKQCWRILRTPESLVARIFRARYHP 823

Query: 63  SVHFV------------------------------------------------------- 122
           SV F+                                                       
Sbjct: 824 SVPFLEAEVGTNPSFIWRSLQWGKELLNKGLRWRVGNGVSIQVYTDKWLPAPSFFKIMSP 883

Query: 123 PSLPLTSCARDLFSDTGQWDGPKIWSHFTIADSEAILRRPLGNMLMEDCLIWHFEKNGLF 124
           P LPL++   DLF+ +GQW+ P +   F   + +A L+ PL ++   DCLIWH+E+NG++
Sbjct: 884 PQLPLSTLVCDLFTSSGQWNVPLLKDIFWDQEVDAKLQIPLASLAGHDCLIWHYERNGMY 943

[Close]

BLAST of Lag0029185 vs. ExPASy TrEMBL
Match: A0A803QK36 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.4e-20
Identity = 74/259 (28.57%), Postives = 109/259 (42.08%), Query Frame = 0


Query: 7    IHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMISV----------- 66
            IHW +W  LC  K  GG+GFR+   FNQALL KQ WR+  DPSS +  V           
Sbjct: 812  IHWKNWKFLCKSKVHGGMGFRNFVHFNQALLAKQAWRILEDPSSLLARVLKSRYFATGVF 871

Query: 67   ---------------------HFVPSLPLTS----CARDLFSDTGQWDGPKIWSHFTIAD 126
                                 +F P L L+S       D  + + QWD PK+   FT  D
Sbjct: 872  LEATAGAQPSLTWKSIVWGPSNFKPLLFLSSDRDVKVADFITHSRQWDVPKLQQFFTPPD 931

Query: 127  SEAILRRPLGNMLMEDCLIWHFEKNGLFSVKSG--------------------CVGEGWL 186
             + IL  PL     ED L+WH+   G ++VKSG                    C+     
Sbjct: 932  VDRILSIPLSLFPCEDVLLWHYSSAGFYTVKSGYKLASDVLDSQPNKTQNESRCLVNVAT 991

Query: 187  WYAGGGSIMRNGRGEVLLSAGFVLPNCWNVDLAEAWAMLRGIEIARQMGFSRFHMETDSL 210
               G  +I+RN  G++L +    +  C   +  EA A+  G+++   +  +   +E+DSL
Sbjct: 992  GVFGLAAILRNSTGDILAAMVKPMKGCVKAEEMEALAIAWGLKLLLHLRLNVDFIESDSL 1051

[Close]

BLAST of Lag0029185 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 67.8 bits (164), Expect = 2.2e-11
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 0


Query: 3   ESKRIHWVSWDSLCCPKCLGGLGFRDMKLFNQALLTKQCWRLFRDPSSFMISV----HFV 62
           E+K +HW +WD L C K  GG+GF+D++ FN ALL KQ WR+   P S M  V    +F 
Sbjct: 35  EAKGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFH 94

Query: 63  PSLPLTS 66
            S PL +
Sbjct: 95  KSDPLNA 101

[Close]

BLAST of Lag0029185 vs. TAIR 10
Match: ATMG00310.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-07
Identity = 27/67 (40.30%), Postives = 38/67 (56.72%), Query Frame = 0


Query: 5   KRIHWVSWDSLCCPK-CLGGLGFRDMKLFNQALLTKQCWRLFRDPS---SFMISVHFVPS 64
           ++I WV+W  LC  K   GGLGFRD+  FNQALL KQ +R+   P    S ++   + P 
Sbjct: 37  RKISWVAWQKLCKSKEDDGGLGFRDLGWFNQALLAKQSFRIIHQPHTLLSRLLRSRYFPH 96

Query: 65  LPLTSCA 68
             +  C+
Sbjct: 97  SSMMECS 103

The following BLAST results are available for this feature:

BLAST of Lag0029185 vs. NCBI nr


Match Name	E-value	Identity	Description
ONI09819.1	2.6e-22	34.05	hypothetical protein PRUPE_4G011200 [Prunus persica]	[more]
ONI01138.1	2.6e-22	34.05	hypothetical protein PRUPE_6G123900 [Prunus persica]	[more]
VVA32947.1	9.8e-22	33.51	PREDICTED: retrotransposon [Prunus dulcis]	[more]
XP_028954978.1	1.8e-20	33.04	uncharacterized protein LOC108172663 [Malus domestica]	[more]
XP_024033483.1	9.1e-20	33.96	uncharacterized protein LOC112095606 [Citrus clementina]	[more]

BLAST of Lag0029185 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P93295	2.1e-06	40.30	Uncharacterized mitochondrial protein AtMg00310 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0C2F6	1.0e-05	45.83	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Lag0029185 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
M5WJW2	1.2e-22	34.05	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
M5W5F3	1.2e-22	34.05	Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=...	[more]
A0A251NPF0	1.2e-22	34.05	Reverse transcriptase domain-containing protein OS=Prunus persica OX=3760 GN=PRU...	[more]
A0A5E4FZN9	4.7e-22	33.51	PREDICTED: retrotransposon OS=Prunus dulcis OX=3755 GN=ALMOND_2B007697 PE=4 SV=1	[more]
A0A803QK36	3.4e-20	28.57	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Lag0029185 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29090.1	2.2e-11	46.27	Ribonuclease H-like superfamily protein	[more]
ATMG00310.1	1.5e-07	40.30	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 132..193 e-value: 1.1E-9 score: 38.1

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029185.1	Lag0029185.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity