Lag0029173 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029173
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Locationchr8: 36040319 .. 36040666 (-)
RNA-Seq ExpressionLag0029173
SyntenyLag0029173
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGGCTCGGATACGTTGGATCTCATTTGTCCATTGTGGGGTTGCTTCTGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGCCAATTCCTAGTCAAGTTAATTGGATTTGTTTAGAGGCCTTCGCAGTCAAGGCTATTTCGCAGAGGGAGATTCTTATTCAGTCCATGACTGCAACAATATTATGGGTAATTTTGGGCGAGCGTAATAAACGGATTTTTCAGAACACTTCACGGACCTACATCAACATTTGGAAAGATATTATTACGCTTGCATCCTTTTGGGTATCCTCCACAAAAGCTTCTTCTATTGCCTTGAATTGGAAAGCTTTTCTGTAA

mRNA sequence

ATGCTGGCTCGGATACGTTGGATCTCATTTGTCCATTGTGGGGTTGCTTCTGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGCCAATTCCTAGTCAAGTTAATTGGATTTGTTTAGAGGCCTTCGCAGTCAAGGCTATTTCGCAGAGGGAGATTCTTATTCAGTCCATGACTGCAACAATATTATGGGTAATTTTGGGCGAGCGTAATAAACGGATTTTTCAGAACACTTCACGGACCTACATCAACATTTGGAAAGATATTATTACGCTTGCATCCTTTTGGGTATCCTCCACAAAAGCTTCTTCTATTGCCTTGAATTGGAAAGCTTTTCTGTAA

Coding sequence (CDS)

ATGCTGGCTCGGATACGTTGGATCTCATTTGTCCATTGTGGGGTTGCTTCTGATATTTGGCTCTCTTTTCATCTAGCTACTGGTATTAATATGCCAATTCCTAGTCAAGTTAATTGGATTTGTTTAGAGGCCTTCGCAGTCAAGGCTATTTCGCAGAGGGAGATTCTTATTCAGTCCATGACTGCAACAATATTATGGGTAATTTTGGGCGAGCGTAATAAACGGATTTTTCAGAACACTTCACGGACCTACATCAACATTTGGAAAGATATTATTACGCTTGCATCCTTTTGGGTATCCTCCACAAAAGCTTCTTCTATTGCCTTGAATTGGAAAGCTTTTCTGTAA

Protein sequence

MLARIRWISFVHCGVASDIWLSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWVILGERNKRIFQNTSRTYINIWKDIITLASFWVSSTKASSIALNWKAFL
Homology
[Close]
BLAST of Lag0029173 vs. NCBI nr
Match: XP_016902461.1 (PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 10   FVHCGVASDIW--LSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWV 69
            F+ C +A  IW  +S HL++ +N   P +   +C+   + K  +++ +++ +  A+ LW 
Sbjct: 947  FILCPIAKSIWRSISSHLSSNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWN 1006

Query: 70   ILGERNKRIFQNTSRTYINIWKDIITLASFWVSST------KASSIALNWKAF 115
            I  ERN RIF    +T   IW+DI  LA  W S +      +ASSIALN  AF
Sbjct: 1007 IWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]
BLAST of Lag0029173 vs. NCBI nr
Match: KAA0039770.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24727.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 10   FVHCGVASDIW--LSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWV 69
            F+ C +A  IW  +S HL++ +N   P +   +C+   + K  +++ +++ +  A+ LW 
Sbjct: 947  FILCPIAKSIWRSISSHLSSNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWN 1006

Query: 70   ILGERNKRIFQNTSRTYINIWKDIITLASFWVSST------KASSIALNWKAF 115
            I  ERN RIF    +T   IW+DI  LA  W S +      +ASSIALN  AF
Sbjct: 1007 IWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1056

[Close]
BLAST of Lag0029173 vs. NCBI nr
Match: TYK13741.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 5.4e-08
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 0 

Query: 10  FVHCGVASDIW--LSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWV 69
           F+ C +A  IW  +S HL++ +N   P +   +C+   + K  +++ +++ +  A+ LW 
Sbjct: 137 FILCPIAKSIWRSISSHLSSNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWN 196

Query: 70  ILGERNKRIFQNTSRTYINIWKDIITLASFWVSST------KASSIALNWKAF 115
           I  ERN RIF    +T   IW+DI  LA  W S +      +ASSIALN  AF
Sbjct: 197 IWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 246

[Close]
BLAST of Lag0029173 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 0 

Query: 10   FVHCGVASDIW--LSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWV 69
            F+ C +A  IW  +S HL + +N   P +   +C+   + K  +++ +++ +  A+ LW 
Sbjct: 1010 FILCPIAKSIWRTISSHLNSNVNCLSPKE---LCITMCSWKQKTKKNVILFNTYASALWN 1069

Query: 70   ILGERNKRIFQNTSRTYINIWKDIITLASFWVSST------KASSIALNWKAF 115
            I  ERN RIF    +T   IW+DI  LA  W S +      +ASSIALN  AF
Sbjct: 1070 IWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 1119

[Close]
BLAST of Lag0029173 vs. NCBI nr
Match: KAA0040037.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-07
Identity = 40/113 (35.40%), Postives = 60/113 (53.10%), Query Frame = 0 

Query: 10  FVHCGVASDIW--LSFHLATGINMPIPSQVNWICLEAFAVKAISQREILIQSMTATILWV 69
           F+ C +A  IW  +S HL + +N   P     +C+   + K  +++ +++ +  A+ LW 
Sbjct: 434 FILCPIAKSIWRLISSHLNSNVNCLSPKD---LCITMCSWKQKTKKNVILYNTYASALWN 493

Query: 70  ILGERNKRIFQNTSRTYINIWKDIITLASFWVSST------KASSIALNWKAF 115
           I  ERN RIF    +T   IW+DI  LA  W S +      +ASSIALN  AF
Sbjct: 494 IWLERNARIFNGKEKTVAEIWEDIKALAGLWTSRSSLFSNYQASSIALNLNAF 543

The following BLAST results are available for this feature:
BLAST of Lag0029173 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_016902461.15.4e-0835.40PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo][more]
KAA0039770.15.4e-0835.40LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK247... [more]
TYK13741.15.4e-0835.40LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK06777.11.2e-0735.40LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0040037.11.2e-0735.40LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
BLAST of Lag0029173 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029173.1Lag0029173.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0110165 cellular anatomical entity