Lag0029124 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029124
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DUF150 domain-containing protein
Location	chr8: 35622932 .. 35623564 (+)
RNA-Seq Expression	Lag0029124
Synteny	Lag0029124

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACCTCAGATCCGGTTCCCCCACTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACAATTGGATGAAGCAGAGCTTGCTAAATCCGTGCCAGAGAACATATCTTTAGAGGTATTCTTCCTTTTTCCTTGTTCTAATTCCCTTATTTTTTTTTCCGTATCATCAACCAATCCATCTTTAGCTTCTGAATGTGAAGTTTTTCACTTCCATTATTCAAATTAGTTTCCTAATTGACAATAGCAAAAGAGAATTGCTCTCTCAGGATTACTCTGTTAGCTTTTGGGTCTAAATGGATGTTATTCCTTCCTACATTATAAGGTTTCATCTCCTGGTGTTGAACGGGTTATTCGGATTCCTGACGAGCTTGACCGGTTCAAAGAAAGGGCAATGTATGTGAAATACACAAACGACGTTATAGCCAGTTCATCCTCCGAGAGTGATGGCATTTTCAAGCTTGTATCATTCGACATAGAAGCAAGATGCTGCACTTGGGGTTTGGCAGACGTGAGGATAAATAGAGAGAAGGCGGGGAAAGGAAGACCACTAAGCAAAAAGCAAAGAGAATGGCGTTTAGAGACTCCCTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

mRNA sequence

ATGTACCTCAGATCCGGTTCCCCCACTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACAATTGGATGAAGCAGAGCTTGCTAAATCCGTGCCAGAGAACATATCTTTAGAGGTTTCATCTCCTGGTGTTGAACGGGTTATTCGGATTCCTGACGAGCTTGACCGGTTCAAAGAAAGGGCAATGTATGTGAAATACACAAACGACGTTATAGCCAGTTCATCCTCCGAGAGTGATGGCATTTTCAAGCTTGTATCATTCGACATAGAAGCAAGATGCTGCACTTGGGGTTTGGCAGACGTGAGGATAAATAGAGAGAAGGCGGGGAAAGGAAGACCACTAAGCAAAAAGCAAAGAGAATGGCGTTTAGAGACTCCCTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

Coding sequence (CDS)

ATGTACCTCAGATCCGGTTCCCCCACTATGGAAGATATTGAGGCTTTTTCTACAACATATCGAGCACAATTGGATGAAGCAGAGCTTGCTAAATCCGTGCCAGAGAACATATCTTTAGAGGTTTCATCTCCTGGTGTTGAACGGGTTATTCGGATTCCTGACGAGCTTGACCGGTTCAAAGAAAGGGCAATGTATGTGAAATACACAAACGACGTTATAGCCAGTTCATCCTCCGAGAGTGATGGCATTTTCAAGCTTGTATCATTCGACATAGAAGCAAGATGCTGCACTTGGGGTTTGGCAGACGTGAGGATAAATAGAGAGAAGGCGGGGAAAGGAAGACCACTAAGCAAAAAGCAAAGAGAATGGCGTTTAGAGACTCCCTTTGATTCATTACGTTTGGTTAGGCTGTATTCTGATTGCTGA

Protein sequence

MYLRSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERAMYVKYTNDVIASSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQREWRLETPFDSLRLVRLYSDC

Homology

[Close]

BLAST of Lag0029124 vs. NCBI nr
Match: XP_008441560.1 (PREDICTED: uncharacterized protein LOC103485652 isoform X2 [Cucumis melo] >KAA0058895.1 DUF150 domain-containing protein [Cucumis melo var. makuwa] >TYK23728.1 DUF150 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 129/139 (92.81%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 4   RSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERA 63
           +SGSP+MEDIEAFSTTYRA+LDEAELAKSVPENISLEVSSPGVERV+RIPDELDRFKERA
Sbjct: 173 KSGSPSMEDIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 232

Query: 64  MYVKYTNDVI-ASSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQRE 123
           MYVKYTNDV+ ASSSSESDG+FKLVSFDIEA+CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 233 MYVKYTNDVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 292

Query: 124 WRLETPFDSLRLVRLYSDC 142
           WRLETPFDSLRLVRLYSDC
Sbjct: 293 WRLETPFDSLRLVRLYSDC 311

[Close]

BLAST of Lag0029124 vs. NCBI nr
Match: XP_008441558.1 (PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 1.4e-66
Identity = 129/139 (92.81%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 4   RSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERA 63
           +SGSP+MEDIEAFSTTYRA+LDEAELAKSVPENISLEVSSPGVERV+RIPDELDRFKERA
Sbjct: 180 KSGSPSMEDIEAFSTTYRARLDEAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 239

Query: 64  MYVKYTNDVI-ASSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQRE 123
           MYVKYTNDV+ ASSSSESDG+FKLVSFDIEA+CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 240 MYVKYTNDVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 299

Query: 124 WRLETPFDSLRLVRLYSDC 142
           WRLETPFDSLRLVRLYSDC
Sbjct: 300 WRLETPFDSLRLVRLYSDC 318

[Close]

BLAST of Lag0029124 vs. NCBI nr
Match: XP_004148816.1 (uncharacterized protein LOC101204078 [Cucumis sativus] >KGN47483.1 hypothetical protein Csa_019009 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 127/139 (91.37%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 4   RSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERA 63
           +SGSP MEDIEAFSTTYRA+LD+AELAKSVPENISLEVSSPGVERV+RIPDELDRFKERA
Sbjct: 174 KSGSPNMEDIEAFSTTYRARLDDAELAKSVPENISLEVSSPGVERVVRIPDELDRFKERA 233

Query: 64  MYVKYTNDVI-ASSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQRE 123
           MYVKYTN+V+ ASSSSESDG+FKLVSFDIEA+CCTWG+ADV+INREKAGKGRPLSKKQRE
Sbjct: 234 MYVKYTNEVVTASSSSESDGVFKLVSFDIEAKCCTWGIADVKINREKAGKGRPLSKKQRE 293

Query: 124 WRLETPFDSLRLVRLYSDC 142
           WRLETPFDSLRLVRLYSDC
Sbjct: 294 WRLETPFDSLRLVRLYSDC 312

[Close]

BLAST of Lag0029124 vs. NCBI nr
Match: XP_038884405.1 (uncharacterized protein LOC120075260 [Benincasa hispida])

HSP 1 Score: 255.0 bits (650), Expect = 3.8e-64
Identity = 127/139 (91.37%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 4   RSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERA 63
           +SGSP+MEDIEAFSTTYRA+LDEAELAKSVPEN+SLEVSSPGVERV++IPDELDRFKERA
Sbjct: 173 KSGSPSMEDIEAFSTTYRARLDEAELAKSVPENLSLEVSSPGVERVVQIPDELDRFKERA 232

Query: 64  MYVKYTNDV-IASSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQRE 123
           MYVKYTNDV  ASSSSESDGIFKLVSFDIEA+ CTWGLADV+INREKAGKGRPLSKKQR+
Sbjct: 233 MYVKYTNDVATASSSSESDGIFKLVSFDIEAKYCTWGLADVKINREKAGKGRPLSKKQRD 292

Query: 124 WRLETPFDSLRLVRLYSDC 142
           WRLETPFDSLRLVRLYSDC
Sbjct: 293 WRLETPFDSLRLVRLYSDC 311

[Close]

BLAST of Lag0029124 vs. NCBI nr
Match: XP_023550697.1 (uncharacterized protein LOC111808765 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.8 bits (639), Expect = 7.2e-63
Identity = 125/138 (90.58%), Postives = 132/138 (95.65%), Query Frame = 0


Query: 4   RSGSPTMEDIEAFSTTYRAQLDEAELAKSVPENISLEVSSPGVERVIRIPDELDRFKERA 63
           +SGSP MEDIEAFS+ YRA+LDEAEL+K+VPENISLEVSSPGVERV+RIPDELDRFKERA
Sbjct: 173 KSGSPRMEDIEAFSSRYRARLDEAELSKTVPENISLEVSSPGVERVVRIPDELDRFKERA 232

Query: 64  MYVKYTNDVIA-SSSSESDGIFKLVSFDIEARCCTWGLADVRINREKAGKGRPLSKKQRE 123
           MYVKYTNDV+  SSSSESDGIFKLVSFDIE RCC WGLADVRINREKAGKGRPLSKKQRE
Sbjct: 233 MYVKYTNDVVTPSSSSESDGIFKLVSFDIETRCCIWGLADVRINREKAGKGRPLSKKQRE 292

Query: 124 WRLETPFDSLRLVRLYSD 141
           WRLETPFDSLRLVRLYSD
Sbjct: 293 WRLETPFDSLRLVRLYSD 310

The following BLAST results are available for this feature:

BLAST of Lag0029124 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441560.1	1.4e-66	92.81	PREDICTED: uncharacterized protein LOC103485652 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_008441558.1	1.4e-66	92.81	PREDICTED: uncharacterized protein LOC103485652 isoform X1 [Cucumis melo]	[more]
XP_004148816.1	1.2e-65	91.37	uncharacterized protein LOC101204078 [Cucumis sativus] >KGN47483.1 hypothetical ...	[more]
XP_038884405.1	3.8e-64	91.37	uncharacterized protein LOC120075260 [Benincasa hispida]	[more]
XP_023550697.1	7.2e-63	90.58	uncharacterized protein LOC111808765 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lag0029124 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028989	Ribosome maturation factor RimP, N-terminal	PFAM	PF02576	DUF150	coord: 6..47 e-value: 8.3E-5 score: 22.9
None	No IPR available	PANTHER	PTHR34544:SF1	OSJNBA0006B20.18 PROTEIN	coord: 4..141
None	No IPR available	PANTHER	PTHR34544	OSJNBA0006B20.18 PROTEIN	coord: 4..141
IPR035956	RimP, N-terminal domain superfamily	SUPERFAMILY	75420	YhbC-like, N-terminal domain	coord: 6..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029124.1	Lag0029124.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis
cellular_component	GO:0005737	cytoplasm