Lag0029106 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029106
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionleucine-rich repeat extensin-like protein 3
Locationchr8: 35439000 .. 35439542 (-)
RNA-Seq ExpressionLag0029106
SyntenyLag0029106
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTTGCAACTGCAATATCCCCATTTGCTTTCTACCTTCTCATTGCGTTGTTCTCTTTGAATCTGCCATCAAAATTTAGTGCACGATATGTTCATTATCCATCTCCTTTACCCGAAAAGCATAAGCCATCAGAGTCGCCTATGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAGAGTCGCCTGTGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCGGCCGAAGAGTCGCCTGTGCCACAACCTCCCATCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAAAGCCTCGTGAAGATACATCACCGCCGCTGTCTCCTTATTATCCCTTCCGGTCTCCACCGCCTCCCTCGAGAAAACGCTTTCCTCCTCCAGATCCCAGTCCCTGGGCACCCAAGTTCATTGTTCTATCTCCTCCACCTCCTTTCTGA

mRNA sequence

ATGGGGTTTGCAACTGCAATATCCCCATTTGCTTTCTACCTTCTCATTGCGTTGTTCTCTTTGAATCTGCCATCAAAATTTAGTGCACGATATGTTCATTATCCATCTCCTTTACCCGAAAAGCATAAGCCATCAGAGTCGCCTATGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAGAGTCGCCTGTGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCGGCCGAAGAGTCGCCTGTGCCACAACCTCCCATCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAAAGCCTCGTGAAGATACATCACCGCCGCTGTCTCCTTATTATCCCTTCCGGTCTCCACCGCCTCCCTCGAGAAAACGCTTTCCTCCTCCAGATCCCAGTCCCTGGGCACCCAAGTTCATTGTTCTATCTCCTCCACCTCCTTTCTGA

Coding sequence (CDS)

ATGGGGTTTGCAACTGCAATATCCCCATTTGCTTTCTACCTTCTCATTGCGTTGTTCTCTTTGAATCTGCCATCAAAATTTAGTGCACGATATGTTCATTATCCATCTCCTTTACCCGAAAAGCATAAGCCATCAGAGTCGCCTATGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAGAGTCGCCTGTGCCACAACCTCCAGTCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCGGCCGAAGAGTCGCCTGTGCCACAACCTCCCATCTCTGAGCCAATAGTTCCCTACTTTCCTTTTGTATATATACCAATACCATCCCCATCCGAAAAGCCTCGTGAAGATACATCACCGCCGCTGTCTCCTTATTATCCCTTCCGGTCTCCACCGCCTCCCTCGAGAAAACGCTTTCCTCCTCCAGATCCCAGTCCCTGGGCACCCAAGTTCATTGTTCTATCTCCTCCACCTCCTTTCTGA

Protein sequence

MGFATAISPFAFYLLIALFSLNLPSKFSARYVHYPSPLPEKHKPSESPMPQPPVSEPIVPYFPFVYIPIPSPSEESPVPQPPVSEPIVPYFPFVYIPIPSPAEESPVPQPPISEPIVPYFPFVYIPIPSPSEKPREDTSPPLSPYYPFRSPPPPSRKRFPPPDPSPWAPKFIVLSPPPPF
Homology
BLAST of Lag0029106 vs. NCBI nr
Match: XP_022141655.1 (leucine-rich repeat extensin-like protein 3 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 9.3e-23
Identity = 102/206 (49.51%), Postives = 117/206 (56.80%), Query Frame = 0

Query: 1   MGFATAISPFAFYLLIALFSLNLPSKFSARYVHYPSPLPEKHKPSES--PMPQ------- 60
           MG ATAI       LIA   LN+ +K SA++VH  SP P    P  S  P+P        
Sbjct: 1   MGCATAI-------LIAWVCLNVSTKLSAQHVHPSSPPPAAPPPIVSLFPLPPKKHKQLQ 60

Query: 61  ---PPVSEPIVPYFPFVYIPIPS--PSEESPVPQP---PVSEPIVPYFPFVYIPIPS--P 120
              PPV+EPIVPYFPFVYIP PS  P E +  P P    V+EPIVPYFPFVYIP PS  P
Sbjct: 61  WSLPPVAEPIVPYFPFVYIPSPSVKPYEHTSPPPPSPVAVAEPIVPYFPFVYIPSPSVRP 120

Query: 121 AEESPVPQP---PISEPIVPYFPFVYIPIPSPSEKPREDTSPPLSPYYPFRSP----PPP 180
            E +  P P    ++EPIVPYFPF +   PSPSE+P E T PP S   P+RSP    PP 
Sbjct: 121 YEHTSPPPPSPVAVAEPIVPYFPFTF--TPSPSEEPYEHTPPPPSAKCPYRSPLNHLPPG 180

BLAST of Lag0029106 vs. NCBI nr
Match: KAF9621452.1 (hypothetical protein IFM89_021524 [Coptis chinensis])

HSP 1 Score: 70.1 bits (170), Expect = 2.2e-08
Identity = 69/170 (40.59%), Postives = 89/170 (52.35%), Query Frame = 0

Query: 24  PSKFSARYVHYPSPLPEKHKPSESPMPQPPVSEPIVPYFPFVYIPIPS-PSEESPVPQPP 83
           PSKF   YV  P  +P   KP       P V  PIVPYFPF  +P  S P++  PV +PP
Sbjct: 42  PSKFKPPYVSNPPRVP---KP-------PSVPNPIVPYFPFFPLPPSSPPTKHPPVYKPP 101

Query: 84  -VSEPIVPYFPFVYIPIPSPAEESP--VPQPPISEPIVPYFPFVYIPIPSPSEKPREDTS 143
            V+ P VPYFPF ++P  +P +++P  V  P +  P VPYFPF ++P  +P +K      
Sbjct: 102 YVANPTVPYFPFRFLPPSAPHKKNPPLVKPPSVPNPTVPYFPFRFLPPSAPHKKNPPLVK 161

Query: 144 P-----PLSPYYPFRSPPP--PSRKR----FPPPDPSPWAPKFIVLSPPP 179
           P     P  PY+PFR  PP  P +K      PP  P+P  P F     PP
Sbjct: 162 PPSVPNPTVPYFPFRHLPPSAPHKKNPPLVKPPSVPNPTVPYFPFRFLPP 201

BLAST of Lag0029106 vs. NCBI nr
Match: XP_027222637.1 (vegetative cell wall protein gp1-like, partial [Penaeus vannamei])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-08
Identity = 65/159 (40.88%), Postives = 77/159 (48.43%), Query Frame = 0

Query: 23  LPSKFSARYVHYPSPLPEKHKPSESPMPQPPVSEPIVPYFPFVYIPIPSPSEESPVPQPP 82
           +PS   + +   PSP P    P  SP P P    P  P  PF+ +P P P   SPV  PP
Sbjct: 324 VPSHPPSPFSPVPSPPPSPFSPVPSPPPSPFSPVPSQPPSPFLPVPSPPPFPFSPVSSPP 383

Query: 83  VSEPIVPYFPFVYIPIPSPAEESPVPQPPISEPIVPYFPFVYIPIPSPSEKPREDT-SPP 142
            S       PF  +P P P+  SPVP PP     VP  P  + P+PSP   P     SPP
Sbjct: 384 SS-------PFSSVPSPPPSPFSPVPSPPPPFSPVPSPPPPFSPVPSPPPSPFSPVPSPP 443

Query: 143 LSPYYPFRSPPPPSRKRFPPPDPSPWAPKFIVLSPPPPF 181
            SP+ P  SPP       P P PSP++P   V SPPPPF
Sbjct: 444 PSPFSPVSSPPSSPFSSVPSPPPSPFSP---VPSPPPPF 472

BLAST of Lag0029106 vs. NCBI nr
Match: ROT69497.1 (hypothetical protein C7M84_012311 [Penaeus vannamei])

HSP 1 Score: 68.9 bits (167), Expect = 5.0e-08
Identity = 65/159 (40.88%), Postives = 77/159 (48.43%), Query Frame = 0

Query: 23  LPSKFSARYVHYPSPLPEKHKPSESPMPQPPVSEPIVPYFPFVYIPIPSPSEESPVPQPP 82
           +PS   + +   PSP P    P  SP P P    P  P  PF+ +P P P   SPV  PP
Sbjct: 370 VPSHPPSPFSPVPSPPPSPFSPVPSPPPSPFSPVPSQPPSPFLPVPSPPPFPFSPVSSPP 429

Query: 83  VSEPIVPYFPFVYIPIPSPAEESPVPQPPISEPIVPYFPFVYIPIPSPSEKPREDT-SPP 142
            S       PF  +P P P+  SPVP PP     VP  P  + P+PSP   P     SPP
Sbjct: 430 SS-------PFSSVPSPPPSPFSPVPSPPPPFSPVPSPPPPFSPVPSPPPSPFSPVPSPP 489

Query: 143 LSPYYPFRSPPPPSRKRFPPPDPSPWAPKFIVLSPPPPF 181
            SP+ P  SPP       P P PSP++P   V SPPPPF
Sbjct: 490 PSPFSPVSSPPSSPFSSVPSPPPSPFSP---VPSPPPPF 518

BLAST of Lag0029106 vs. NCBI nr
Match: PON76262.1 (hypothetical protein PanWU01x14_036800 [Parasponia andersonii])

HSP 1 Score: 68.6 bits (166), Expect = 6.5e-08
Identity = 73/181 (40.33%), Postives = 90/181 (49.72%), Query Frame = 0

Query: 8   SPFAFY---LLIALFSLNLPSKFSARYVHYPSPLPEKHKPSESPMPQPPVSEPIVPYFPF 67
           SP AF    LL+ L SL+LPSK +A   + P   P  H   +SP P PPV  P  P  P+
Sbjct: 17  SPIAFLVSTLLVVLVSLSLPSKTTANDAYSPPVSPPYH--YKSPPPPPPVHSPPPPKEPY 76

Query: 68  VYIPIPSPSEESPVPQPPVSEPIVPYFPFVYIPIPSPAEESPVPQPPISEPIVPYFPFVY 127
            Y   P P  + P   PPV  P  P  P+ Y   P P  + P   PP+  P  P  P+ Y
Sbjct: 77  HYKSPPPPPPKEPYHPPPVPSP--PKEPYHYKSPPPPPPKKPYHPPPVPSP--PKEPYHY 136

Query: 128 -IPIPSPSEKPRED---TSPPLSPYYPFRSPPPPSRKR--FPPPDPSPWAPKFIVLSPPP 180
             P P P +KP       SPP  PY+ ++SPPPP  K+   PPP PSP    +   SPPP
Sbjct: 137 KSPPPPPPKKPYYPPPVPSPPKEPYH-YKSPPPPPPKKPYHPPPVPSPPKEPYHYKSPPP 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141655.19.3e-2349.51leucine-rich repeat extensin-like protein 3 [Momordica charantia][more]
KAF9621452.12.2e-0840.59hypothetical protein IFM89_021524 [Coptis chinensis][more]
XP_027222637.15.0e-0840.88vegetative cell wall protein gp1-like, partial [Penaeus vannamei][more]
ROT69497.15.0e-0840.88hypothetical protein C7M84_012311 [Penaeus vannamei][more]
PON76262.16.5e-0840.33hypothetical protein PanWU01x14_036800 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 132..157
score: 22.31
coord: 75..91
score: 29.41
coord: 52..73
score: 32.73
coord: 98..115
score: 40.0
coord: 37..49
score: 36.92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029106.1Lag0029106.1mRNA