Lag0029105 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0029105
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionextensin-like
Locationchr8: 35418287 .. 35418610 (-)
RNA-Seq ExpressionLag0029105
SyntenyLag0029105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAACCCTTATGAATATCAACCTCCACCCCCGCCACCGCCACCGCCGTCTAGAAAACTGCCCTATCCACCTCCTCCTCCCTGCAACCATGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCCACCGCCACCGCCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCAGTCGTAAATCGCCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAACCCTTATGAATATCAACCTCCACCCCCGCCACCGCCACCGCCGTCTAGAAAACTGCCCTATCCACCTCCTCCTCCCTGCAACCATGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCCACCGCCACCGCCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCAGTCGTAAATCGCCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTATGTAATATTTGTGTCCTATGTTTTATCCCTTCTCATTGCATTTGTTTCTTTAGATCTGCCTTCAAAATTGACTGCACACTACATTCACCCATCTCCACCCACCAACCCTTATGAATATCAACCTCCACCCCCGCCACCGCCACCGCCGTCTAGAAAACTGCCCTATCCACCTCCTCCTCCCTGCAACCATGGCTCACCACCGCCAGCCAACAAGAAATACAAAATCAAGTCTCCGCCGCCACCGCCACCGCCACCGCCACCTAAGAAGCCATGGCCAGGAGGGTTCAGTCGTAAATCGCCTCCACCTCCTTTCTAA

Protein sequence

MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPPPPPPSRKLPYPPPPPCNHGSPPPANKKYKIKSPPPPPPPPPPKKPWPGGFSRKSPPPPF
Homology
BLAST of Lag0029105 vs. NCBI nr
Match: XP_023551507.1 (extensin-3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.1 bits (196), Expect = 1.3e-11
Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = 0

Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPPPPP-PSRKLPY 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP TNP++YQPPPPP PP PS+KLPY
Sbjct: 1   MGSLILPSFYLFSLLIALLSLDLPSKLAAPSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PPPPPCNHGSPPPANK-KYKIKSPPPPPPPPPPKKPWPGGFSRKSPPPPF 108
           PPP  C   +PPP  K ++K K      P PP   PW   F+ KSPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPKNRHKFK------PSPPHPMPWQRKFTHKSPPPPF 104

BLAST of Lag0029105 vs. NCBI nr
Match: XP_022993352.1 (extensin-like [Cucurbita maxima])

HSP 1 Score: 76.6 bits (187), Expect = 1.4e-10
Identity = 60/108 (55.56%), Postives = 70/108 (64.81%), Query Frame = 0

Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPPPPPPSRKLPYP 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP TNP+EYQ   PPPP PS KLPYP
Sbjct: 1   MGSLILASFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHEYQ---PPPPFPSEKLPYP 60

Query: 61  PPPPCNHGSPPPANKKYKIKSPPPPPPPPPPKKPWPGGFSRKSPPPPF 108
           PP  C   +PPP   ++K K+ PP   P     PW   F+  SPPPPF
Sbjct: 61  PPSVCTQLAPPPPKNRHKFKTSPPHRMP-----PWQRKFTHTSPPPPF 100

BLAST of Lag0029105 vs. NCBI nr
Match: KAG6578902.1 (hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-10
Identity = 56/107 (52.34%), Postives = 61/107 (57.01%), Query Frame = 0

Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPPPPPPSRKLPYPP 60
           MG +IF SY   LLI FVSL LPSKLTA+YIHP                       P  P
Sbjct: 70  MGSLIFKSYFFLLLIVFVSLYLPSKLTAYYIHP-----------------------PLRP 129

Query: 61  PPPCNHGSPPPANKKYKIKSPPPPPPPPPPKKPWPGGFSRKSPPPPF 108
           PPP  HG+PPPA KKYK K+    PPPP P KPWP  F  KSPPPP+
Sbjct: 130 PPPSVHGAPPPAKKKYKFKA----PPPPAPAKPWPIRFHHKSPPPPY 149

BLAST of Lag0029105 vs. NCBI nr
Match: TYK29731.1 (hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-09
Identity = 68/141 (48.23%), Postives = 74/141 (52.48%), Query Frame = 0

Query: 1   MGYVIFVSYVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPP----------PP 60
           MG+VI  SY+  LL AF SL+LPSKLTAHYIHPS PT   EY+PPP P          PP
Sbjct: 1   MGFVILASYLFFLLTAFFSLNLPSKLTAHYIHPSSPTKLREYKPPPLPLPRLVCSYGAPP 60

Query: 61  PPSRKLPYPPPPPCN-----HGSPPPANKKYKIKSPPP-------------------PPP 108
           PP  K   PPP P          P PA K+YK K PPP                   PP 
Sbjct: 61  PPKYKF-QPPPSPAKKRHKFRPPPSPAKKRYKFKPPPPPAKKRDNFKSPPLPFMPPLPPS 120

BLAST of Lag0029105 vs. NCBI nr
Match: XP_022939147.1 (extensin-like [Cucurbita moschata])

HSP 1 Score: 72.8 bits (177), Expect = 2.0e-09
Identity = 62/109 (56.88%), Postives = 72/109 (66.06%), Query Frame = 0

Query: 1   MGYVIFVS-YVLSLLIAFVSLDLPSKLTAHYIHPSPPTNPYEYQPPPPPPPP-PSRKLPY 60
           MG +I  S Y+ SLLIA +SLDLPSKL A  +HPSP TNP++YQPPPPP PP PS+KLPY
Sbjct: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60

Query: 61  PPPPPCNHGSPPPANKKYKIKSPPPPPPPPPPKKPWPGGFSRKSPPPPF 108
           PPP  C   +PPP   K + K    PP   P   PW   F+  SPPPPF
Sbjct: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMP---PWQRKFTHTSPPPPF 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023551507.11.3e-1158.18extensin-3-like [Cucurbita pepo subsp. pepo][more]
XP_022993352.11.4e-1055.56extensin-like [Cucurbita maxima][more]
KAG6578902.15.4e-1052.34hypothetical protein SDJN03_23350, partial [Cucurbita argyrosperma subsp. sorori... [more]
TYK29731.11.6e-0948.23hypothetical protein E5676_scaffold63236G00010 [Cucumis melo var. makuwa][more]
XP_022939147.12.0e-0956.88extensin-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 28..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0029105.1Lag0029105.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane