Lag0029015 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0029015
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Senescence-associated protein
Location	chr8: 34266117 .. 34266862 (+)
RNA-Seq Expression	Lag0029015
Synteny	Lag0029015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGTAGCGCTGGTCCGATTCGATTTATTGTCAGCGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGACTGCCGATTCTTGGCTCCGATCTTCACGATTTCCAGCTTTACTGCCCGAATGCTGGACCAGATGGTAATTCAAACTTTTTCTCTTTTTATCTCGATTATCTCGATTCAATCGCAATTCATAACAATTTCCCTTTACAACCATGTTGCATGTTTCCAATCTGAAAGGCCGGAAAGAATTGAGATGATGTTCATAAATTAATTATCCCTATCTCAATTTCGTTTCTTAATATTGTGATGGGGATCTCTGTTCTGGGATTTTGTTTCTCAATTTCGTTCATTGGTTTTGTGTTGGGATCTTCTGTGTTTTCTACCATGAGAATCCTCTGATCATATCATAGAAAAACAAATCTGGGATTTTGTTTCTCATGTTGTTTGGGAATTTTCCTGCAGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCATGTTATGCAAGAAGCCACAGCCAGAGAAAGTGGCAGAAGATGGAAAATCACCACCAGGGCCAGCCATCCCCCGCAAAGGCACTGGGAGCTGGAGGTCATGGATCAACAAGTCTCTGAATTTGAAAATCTATTCCCATTGA

mRNA sequence

ATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGTAGCGCTGGTCCGATTCGATTTATTGTCAGCGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGACTGCCGATTCTTGGCTCCGATCTTCACGATTTCCAGCTTTACTGCCCGAATGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCATGTTATGCAAGAAGCCACAGCCAGAGAAAGTGGCAGAAGATGGAAAATCACCACCAGGGCCAGCCATCCCCCGCAAAGGCACTGGGAGCTGGAGGTCATGGATCAACAAGTCTCTGAATTTGAAAATCTATTCCCATTGA

Coding sequence (CDS)

ATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGTAGCGCTGGTCCGATTCGATTTATTGTCAGCGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGACTGCCGATTCTTGGCTCCGATCTTCACGATTTCCAGCTTTACTGCCCGAATGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCATGTTATGCAAGAAGCCACAGCCAGAGAAAGTGGCAGAAGATGGAAAATCACCACCAGGGCCAGCCATCCCCCGCAAAGGCACTGGGAGCTGGAGGTCATGGATCAACAAGTCTCTGAATTTGAAAATCTATTCCCATTGA

Protein sequence

MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPILGSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKGTGSWRSWINKSLNLKIYSH

Homology

[Close]

BLAST of Lag0029015 vs. NCBI nr
Match: XP_016898863.1 (PREDICTED: uncharacterized protein At4g22758-like [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 7.8e-70
Identity = 130/139 (93.53%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKG 120
           GSDL DFQLYCPN GPDALSPWDTIGSHGARNFMLCKKPQPEKV+E+GKSPPGP IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVSEEGKSPPGPTIPRKS 120

Query: 121 TGSWRSWINKSLNLKIYSH 140
            GSW+SWINKSLNLKIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Lag0029015 vs. NCBI nr
Match: XP_004150595.1 (uncharacterized protein At4g22758 [Cucumis sativus] >KGN51491.1 hypothetical protein Csa_007791 [Cucumis sativus])

HSP 1 Score: 270.4 bits (690), Expect = 8.7e-69
Identity = 129/139 (92.81%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKG 120
           GSDL DFQLYCPN GPDALSPWDTIGSHGARNFMLCKKPQPEKV E+GK+P GPAIPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 121 TGSWRSWINKSLNLKIYSH 140
            GSW+SWINKSLNLKIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Lag0029015 vs. NCBI nr
Match: XP_038875275.1 (uncharacterized protein At4g22758 isoform X1 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 3   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 62

Query: 61  GSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKG 120
           GSDL DFQLYCPN+GPDAL PWDTIGSHGARNFMLCKKPQPEKV EDGKSP  P I RKG
Sbjct: 63  GSDLRDFQLYCPNSGPDALCPWDTIGSHGARNFMLCKKPQPEKVPEDGKSPRSPTISRKG 122

Query: 121 TGSWRSWINKSLNLKIYSH 140
           TGSW+SWINKSLNLKIYSH
Sbjct: 123 TGSWKSWINKSLNLKIYSH 141

[Close]

BLAST of Lag0029015 vs. NCBI nr
Match: XP_038875276.1 (uncharacterized protein At4g22758 isoform X2 [Benincasa hispida])

HSP 1 Score: 268.5 bits (685), Expect = 3.3e-68
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 0


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKG 120
           GSDL DFQLYCPN+GPDAL PWDTIGSHGARNFMLCKKPQPEKV EDGKSP  P I RKG
Sbjct: 61  GSDLRDFQLYCPNSGPDALCPWDTIGSHGARNFMLCKKPQPEKVPEDGKSPRSPTISRKG 120

Query: 121 TGSWRSWINKSLNLKIYSH 140
           TGSW+SWINKSLNLKIYSH
Sbjct: 121 TGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Lag0029015 vs. NCBI nr
Match: XP_022939519.1 (uncharacterized protein At4g22758-like [Cucurbita moschata] >XP_023551231.1 uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.1 bits (684), Expect = 4.3e-68
Identity = 128/139 (92.09%), Postives = 133/139 (95.68%), Query Frame = 0


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLHDFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSPPGPAIPRKG 120
           GSDL DFQLYCP AGPDALSPWDTIGSHG+RNFMLCKKPQPEKV E G SPP P+IPRKG
Sbjct: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120

Query: 121 TGSWRSWINKSLNLKIYSH 140
           TGSW+SWINKSLN+KIYSH
Sbjct: 121 TGSWKSWINKSLNMKIYSH 139

[Close]

BLAST of Lag0029015 vs. ExPASy Swiss-Prot
Match: Q56XJ7 (Uncharacterized protein At4g22758 OS=Arabidopsis thaliana OX=3702 GN=At4g22758 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 1.2e-04
Identity = 34/106 (32.08%), Postives = 51/106 (48.11%), Query Frame = 0


Query: 11  NVKGN-----RLLISINVLGSAGPIRFIVSEEQLVAAVIDTALKSYAREGRLPILGSDLH 70
           N +GN     +++IS+ V GS GP+R +V     V   I   +  Y +EGR P L  D  
Sbjct: 113 NQEGNTKEAPKVIISVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKLDRD-S 172

Query: 71  DFQLYCPNAGPDALSPWDTIGSHGARNFMLCKKPQPEKVAEDGKSP 112
            F+L+  +     L   + IG  G+R+F + KK      +  G SP
Sbjct: 173 AFELHQSHFSIQCLEKREIIGELGSRSFYMRKKAPETGGSFAGISP 217

The following BLAST results are available for this feature:

BLAST of Lag0029015 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016898863.1	7.8e-70	93.53	PREDICTED: uncharacterized protein At4g22758-like [Cucumis melo]	[more]
XP_004150595.1	8.7e-69	92.81	uncharacterized protein At4g22758 [Cucumis sativus] >KGN51491.1 hypothetical pro...	[more]
XP_038875275.1	3.3e-68	92.81	uncharacterized protein At4g22758 isoform X1 [Benincasa hispida]	[more]
XP_038875276.1	3.3e-68	92.81	uncharacterized protein At4g22758 isoform X2 [Benincasa hispida]	[more]
XP_022939519.1	4.3e-68	92.09	uncharacterized protein At4g22758-like [Cucurbita moschata] >XP_023551231.1 unch...	[more]

BLAST of Lag0029015 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q56XJ7	1.2e-04	32.08	Uncharacterized protein At4g22758 OS=Arabidopsis thaliana OX=3702 GN=At4g22758 P...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..122
None	No IPR available	PANTHER	PTHR33270:SF31	SUBFAMILY NOT NAMED	coord: 1..138
IPR040358	Uncharacterized protein At4g22758-like	PANTHER	PTHR33270	BNAC05G50380D PROTEIN	coord: 1..138

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0029015.1	Lag0029015.1	mRNA