Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exon CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTAAAATTGAAGACCTTGTTGATCGATGGAAGACGTGGAAATTAACAGAGAAGGAAGGGAAGGTTGTGGACGCGATAGACAGTGAAGTGTTTTTTTCGAATGAGGATATTGATCTGTGCTTAGTCACAAAAGTGGTATCTAGCAAAAAGGCGAATTGTGATGCTTTTAAGTCTGTTATGAGGTCAGTTTGGAGGGTGCACCATAACACAAGGTTTGAGTCTGCTGGGAATAATGTTTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCAAGGGTTGTTAGTTCAGACCCTTGGCCTTTCGATAAATCACTTATAGTGATGATATTGCCAAAGGAAAACGATCAGATTATTGATATGAAATTCAACGAGGAGGCTTTCTGGGTGCAGGTCCATAATGTGCCAGTGAACTGTATGACTGTTGAGATGGCCAAACGAGTAGGGGAGGTTGCGGGGGTTGTGGAAGGGATAGACTGGGATGAGAAGAGTAGGTGGTCTGGCCCTGTGATGAGAGTACGGCTGAGAGTGGATATAACTAGCCCTCTGTAG mRNA sequence
ATGGCTAAAATTGAAGACCTTGTTGATCGATGGAAGACGTGGAAATTAACAGAGAAGGAAGGGAAGGTTGTGGACGCGATAGACAGTGAAGTGTTTTTTTCGAATGAGGATATTGATCTGTGCTTAGTCACAAAAGTGGTATCTAGCAAAAAGGCGAATTGTGATGCTTTTAAGTCTGTTATGAGGTCAGTTTGGAGGGTGCACCATAACACAAGGTTTGAGTCTGCTGGGAATAATGTTTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCAAGGGTTGTTAGTTCAGACCCTTGGCCTTTCGATAAATCACTTATAGTGATGATATTGCCAAAGGAAAACGATCAGATTATTGATATGAAATTCAACGAGGAGGCTTTCTGGGTGCAGGTCCATAATGTGCCAGTGAACTGTATGACTGTTGAGATGGCCAAACGAGTAGGGGAGGTTGCGGGGGTTGTGGAAGGGATAGACTGGGATGAGAAGAGTAGGTGGTCTGGCCCTGTGATGAGAGTACGGCTGAGAGTGGATATAACTAGCCCTCTGTAG Coding sequence (CDS)
ATGGCTAAAATTGAAGACCTTGTTGATCGATGGAAGACGTGGAAATTAACAGAGAAGGAAGGGAAGGTTGTGGACGCGATAGACAGTGAAGTGTTTTTTTCGAATGAGGATATTGATCTGTGCTTAGTCACAAAAGTGGTATCTAGCAAAAAGGCGAATTGTGATGCTTTTAAGTCTGTTATGAGGTCAGTTTGGAGGGTGCACCATAACACAAGGTTTGAGTCTGCTGGGAATAATGTTTTCTTTGTCCAGTTTAAGACTAAAATGGAAAAGGCAAGGGTTGTTAGTTCAGACCCTTGGCCTTTCGATAAATCACTTATAGTGATGATATTGCCAAAGGAAAACGATCAGATTATTGATATGAAATTCAACGAGGAGGCTTTCTGGGTGCAGGTCCATAATGTGCCAGTGAACTGTATGACTGTTGAGATGGCCAAACGAGTAGGGGAGGTTGCGGGGGTTGTGGAAGGGATAGACTGGGATGAGAAGAGTAGGTGGTCTGGCCCTGTGATGAGAGTACGGCTGAGAGTGGATATAACTAGCCCTCTGTAG Protein sequence
MAKIEDLVDRWKTWKLTEKEGKVVDAIDSEVFFSNEDIDLCLVTKVVSSKKANCDAFKSVMRSVWRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDMKFNEEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGIDWDEKSRWSGPVMRVRLRVDITSPL
Homology
BLAST of Lag0028956 vs. NCBI nr
Match:
XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])
HSP 1 Score: 171.0 bits (432), Expect = 9.4e-39
Identity = 75/180 (41.67%), Postives = 122/180 (67.78%), Query Frame = 0
Query: 4 IEDLVDRWKTWKLTEKEGKVVDAIDSEVFFSNEDIDLCLVTKVVSSKKANCDAFKSVMRS 63 ++++ D W+ +K T E + V + + +++ LC+V K+ +SK+ + +A +SVM+S Sbjct: 1 MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60 Query: 64 VWRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDMKF 123 VWRVH++TRFE G N++ + FK+ EK+RV+SS PW F+KSL+V+ P +Q +DM F Sbjct: 61 VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120 Query: 124 NEEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGIDWDEKSRWSGPVMRVRLRVDITSPL 183 N AFW+Q+HN+P C++ EMA +G G VE I+ D W+GP +RVR+++D++ PL Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 180
BLAST of Lag0028956 vs. NCBI nr
Match:
XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])
HSP 1 Score: 149.4 bits (376), Expect = 2.9e-32
Identity = 74/181 (40.88%), Postives = 118/181 (65.19%), Query Frame = 0
Query: 4 IEDLVDRWKTWKLT-EKEGKVVDAIDSE-VFFSNEDIDLCLVTKVVSSKKANCDAFKSVM 63 ++++ + W+ + LT EKE ++ IDSE + E++ V K+ +SK+ + +AF+SVM Sbjct: 1 MDEITELWENFTLTKEKEETII--IDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVM 60 Query: 64 RSVWRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDM 123 +S+W+VH +T E+AG N++ + FK+ EK RV++S PW F+ SL+V+ P DQ DM Sbjct: 61 KSLWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDM 120 Query: 124 KFNEEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGIDWDEKSRWSGPVMRVRLRVDITS 183 FN A W+Q+H +P CM +MAK +G G VE ID + W+GP +RVR+++DI+ Sbjct: 121 NFNFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTGPFIRVRVQIDISK 179
BLAST of Lag0028956 vs. NCBI nr
Match:
XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])
HSP 1 Score: 138.7 bits (348), Expect = 5.2e-29
Identity = 64/180 (35.56%), Postives = 109/180 (60.56%), Query Frame = 0
Query: 4 IEDLVDRWKTWKLTEKEGKVVDAIDSEVFFSNEDIDLCLVTKVVSSKKANCDAFKSVMRS 63 ++D+ W+ + L ++E + + + + ++I LC V K+ SK+ +AF SVM+ Sbjct: 1 MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60 Query: 64 VWRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDMKF 123 VW++H++TR E+AG N++ + FKT EK RV S PW FDKSL++++ ++ +D+ Sbjct: 61 VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120 Query: 124 NEEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGIDWDEKSRWSGPVMRVRLRVDITSPL 183 + AFWVQ+H + CMT +MAK +G G VE +D W P + VR+++++ PL Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPL 180
BLAST of Lag0028956 vs. NCBI nr
Match:
XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])
HSP 1 Score: 134.4 bits (337), Expect = 9.8e-28
Identity = 62/156 (39.74%), Postives = 101/156 (64.74%), Query Frame = 0
Query: 4 IEDLVDRWKTWKLTEKEGKVVDAIDSEVFFSNEDIDLCLVTKVVSSKKANCDAFKSVMRS 63 ++++ + W+ + LT +E + + + + E+I LC V K+ +SK+ + A SVM+ Sbjct: 1 MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60 Query: 64 VWRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDMKF 123 VW++H +TR E+AG N++ + FKT +EK RV+SS PW FDKSL V++ P D+ +D+ F Sbjct: 61 VWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPLDVDF 120 Query: 124 NEEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGID 160 AFWVQ+H +P +T +MAK +G+ G VE +D Sbjct: 121 RFCAFWVQIHCIPFEYLTRDMAKLLGDRLGKVEEVD 156
BLAST of Lag0028956 vs. NCBI nr
Match:
TXG73339.1 (hypothetical protein EZV62_001918 [Acer yangbiense])
HSP 1 Score: 129.0 bits (323), Expect = 4.1e-26
Identity = 64/179 (35.75%), Postives = 102/179 (56.98%), Query Frame = 0
Query: 5 EDLVDRWKTWKLTEKEGKVVDAIDSEVFFSNEDIDLCLVTKVVSSKKANCDAFKSVMRSV 64 +++ D ++ + E++G V++ ++E+ +D+D CLV KV++ KK N +AF+S++ + Sbjct: 4 KEITDLYENLSIAEEDGVVLETSETEIEDGAKDVDCCLVGKVLTGKKVNREAFRSLIEQI 63 Query: 65 WRVHHNTRFESAGNNVFFVQFKTKMEKARVVSSDPWPFDKSLIVMILPKENDQIIDMKFN 124 W E +N+F F + ++ RV PW F KSLIV+ PK + FN Sbjct: 64 WSPFGQVEVEVVADNIFMFYFIKQEDRNRVWQRGPWHFGKSLIVLEKPKGTGNYSQLGFN 123 Query: 125 EEAFWVQVHNVPVNCMTVEMAKRVGEVAGVVEGIDWDEKSRWSGPVMRVRLRVDITSPL 184 + AFWVQ+H+ P+ CM MAK + E G V I D K W G MRV++ +DI+ PL Sbjct: 124 KAAFWVQIHDTPIICMNRRMAKWMAEQIGEVVEIPADSKECW-GKFMRVKVCIDISKPL 181
The following BLAST results are available for this feature:
Match Name E-value Identity Description
XP_022149484.1 9.4e-39 41.67 uncharacterized protein LOC111017902 [Momordica charantia] [more]
XP_022155933.1 2.9e-32 40.88 uncharacterized protein LOC111022932 [Momordica charantia] [more]
XP_022156711.1 5.2e-29 35.56 uncharacterized protein LOC111023555 [Momordica charantia] [more]
XP_022158119.1 9.8e-28 39.74 uncharacterized protein LOC111024676, partial [Momordica charantia] [more]
TXG73339.1 4.1e-26 35.75 hypothetical protein EZV62_001918 [Acer yangbiense] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G C T A A A A T T G A A G A C C T T G T T G A T C G A T G G A A G A C G T G G A A A T T A A C A G A G A A G G A A G G G A A G G T T G T G G A C G C G A T A G A C A G T G A A G T G T T T T T T T C G A A T G A G G A T A T T G A T C T G T G C T T A G T C A C A A A A G T G G T A T C T A G C A A A A A G G C G A A T T G T G A T G C T T T T A A G T C T G T T A T G A G G T C A G T T T G G A G G G T G C A C C A T A A C A C A A G G T T T G A G T C T G C T G G G A A T A A T G T T T T C T T T G T C C A G T T T A A G A C T A A A A T G G A A A A G G C A A G G G T T G T T A G T T C A G A C C C T T G G C C T T T C G A T A A A T C A C T T A T A G T G A T G A T A T T G C C A A A G G A A A A C G A T C A G A T T A T T G A T A T G A A A T T C A A C G A G G A G G C T T T C T G G G T G C A G G T C C A T A A T G T G C C A G T G A A C T G T A T G A C T G T T G A G A T G G C C A A A C G A G T A G G G G A G G T T G C G G G G G T T G T G G A A G G G A T A G A C T G G G A T G A G A A G A G T A G G T G G T C T G G C C C T G T G A T G A G A G T A C G G C T G A G A G T G G A T A T A A C T A G C C C T C T G T A G 50 100 150 200 250 300 350 400 450 500 550 Expect = 4.1E-17 / Score = 62.1 Score = Score = Sequence PF14111 PTHR31286 PTHR31286:SF84
IPR Term IPR Description Source Source Term Source Description Alignment
IPR025558 Domain of unknown function DUF4283 PFAM PF14111 DUF4283 coord: 34..174 e-value: 4.1E-17 score: 62.1
IPR040256 Uncharacterized protein At4g02000-like PANTHER PTHR31286 GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKE coord: 17..183
None No IPR available PANTHER PTHR31286:SF84 SUBFAMILY NOT NAMED coord: 17..183
Relationships
The following mRNA feature(s) are a part of this gene: