Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA
mRNA sequence
ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA
Coding sequence (CDS)
ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA
Protein sequence
MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEFERFVEGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKFDVNGDGVLCFDEFRVMMLL
Homology
BLAST of Lag0028935 vs. NCBI nr
Match:
XP_022989992.1 (putative calcium-binding protein CML19 [Cucurbita maxima])
HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 113/140 (80.71%), Postives = 129/140 (92.14%), Query Frame = 0
Query: 1 MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
M +FSRY+ VFN+ID+DCDGKVS QDLL+RF+AVTGE LTE EAAA VAA+DSD DGLLE
Sbjct: 1 MPQFSRYQRVFNSIDSDCDGKVSSQDLLTRFAAVTGEHLTEEEAAAVVAAYDSDDDGLLE 60
Query: 61 MAEFERFV-EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
+AEFERFV EGD EG+E++EAF+MYEMEGLGVITAVSLRRMLS+LGESR++ DC RMIAK
Sbjct: 61 IAEFERFVEEGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLSQLGESRSIGDCNRMIAK 120
Query: 121 FDVNGDGVLCFDEFRVMMLL 140
FDVNGDGVLCFDEFR+MMLL
Sbjct: 121 FDVNGDGVLCFDEFRIMMLL 140
BLAST of Lag0028935 vs. NCBI nr
Match:
XP_022962715.1 (probable calcium-binding protein CML31 [Cucurbita moschata] >KAG6601838.1 putative calcium-binding protein CML31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032546.1 putative calcium-binding protein CML31, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 0
Query: 1 MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
M +FSRY+ VFN+ID+D DGKVS QDLL+RF+AVTGEELTE EAAA VAA+DSD DGLLE
Sbjct: 1 MPQFSRYQRVFNSIDSDGDGKVSSQDLLTRFAAVTGEELTEEEAAAVVAAYDSDDDGLLE 60
Query: 61 MAEFERFVE-GDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
+AEFER VE GD EG+E++EAF+MYEMEGLGVITAVSLRRMLS+LG+SR++ DC RMIAK
Sbjct: 61 IAEFERLVEDGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLSQLGQSRSIGDCNRMIAK 120
Query: 121 FDVNGDGVLCFDEFRVMMLL 140
FDVNGDGVLCFDEFR+MMLL
Sbjct: 121 FDVNGDGVLCFDEFRIMMLL 140
BLAST of Lag0028935 vs. NCBI nr
Match:
XP_023520938.1 (probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 110/137 (80.29%), Postives = 125/137 (91.24%), Query Frame = 0
Query: 1 MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
M +FSRYE VFN+ID+D DGKVS QDLL+RF+AVTGEELTE EAAA VAA+DSD DGLLE
Sbjct: 1 MPQFSRYERVFNSIDSDGDGKVSSQDLLTRFAAVTGEELTEEEAAAVVAAYDSDDDGLLE 60
Query: 61 MAEFERFV-EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
+AEFERFV EGD EG+E++EAF+MYEMEGLGVITAVSLRRML +LGESR++ DC RMIAK
Sbjct: 61 IAEFERFVEEGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLIQLGESRSIGDCNRMIAK 120
Query: 121 FDVNGDGVLCFDEFRVM 137
FDVNGDGVLCFDEFR+M
Sbjct: 121 FDVNGDGVLCFDEFRIM 137
BLAST of Lag0028935 vs. NCBI nr
Match:
XP_038875509.1 (putative calcium-binding protein CML23 [Benincasa hispida])
HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 107/139 (76.98%), Postives = 120/139 (86.33%), Query Frame = 0
Query: 1 MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
MDKF+ +FNTID DCDGKVSP DLL+R +TGE+LTE +AAAAVAAFD +GDGLL+
Sbjct: 1 MDKFT---LLFNTIDTDCDGKVSPHDLLTRLPPLTGEDLTEVDAAAAVAAFDWNGDGLLD 60
Query: 61 MAEFERFVEGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKF 120
M EF R VEGD+E E+REAF+MYEMEGLGVIT VSLRRMLSRLGESR+V DCK+MIAKF
Sbjct: 61 MEEFGRLVEGDDE-EEVREAFQMYEMEGLGVITPVSLRRMLSRLGESRSVGDCKKMIAKF 120
Query: 121 DVNGDGVLCFDEFRVMMLL 140
DVNGDGVLCFDEFR MMLL
Sbjct: 121 DVNGDGVLCFDEFRTMMLL 135
BLAST of Lag0028935 vs. NCBI nr
Match:
XP_004150479.1 (probable calcium-binding protein CML31 [Cucumis sativus] >KGN51513.1 hypothetical protein Csa_008833 [Cucumis sativus])
HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 107/145 (73.79%), Postives = 120/145 (82.76%), Query Frame = 0
Query: 1 MDKFSRYES-VFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLL 60
MDK S Y + +F ID D DGKVSP DLL+R A+TG+ LTEAEAA+AVAAFDSDGDGLL
Sbjct: 1 MDKLSPYHTLLFYNIDTDSDGKVSPHDLLTRLPALTGQVLTEAEAASAVAAFDSDGDGLL 60
Query: 61 EMAEFERFVE-----GDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCK 120
M EF R VE GD++ RE+REAF+MYEMEGLGVIT VSLRRMLSRLGESR+V DCK
Sbjct: 61 GMEEFGRLVEGVVVGGDDDDREVREAFQMYEMEGLGVITPVSLRRMLSRLGESRSVGDCK 120
Query: 121 RMIAKFDVNGDGVLCFDEFRVMMLL 140
RMIAKFD++GDGVLCFDEFR MMLL
Sbjct: 121 RMIAKFDLDGDGVLCFDEFRGMMLL 145
BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match:
Q8RYK0 (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica OX=39947 GN=CML31 PE=2 SV=1)
HSP 1 Score: 125.2 bits (313), Expect = 5.9e-28
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0
Query: 9 SVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEFERFV 68
++F T D D DG++S +L GEE+++ EA VA+ D+DGDGLL AEF R V
Sbjct: 14 ALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLV 73
Query: 69 -------EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKFD 128
E + G +REAF MYEMEG G IT SLRRML RLG + + DC+ MI +FD
Sbjct: 74 QAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLGSDQDIDDCRAMICRFD 133
Query: 129 VNGDGVLCFDEFRVMM 138
+NGDGVL FDEF++MM
Sbjct: 134 LNGDGVLSFDEFKIMM 149
BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match:
Q8RYJ9 (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica OX=39947 GN=CML23 PE=3 SV=1)
HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 73/149 (48.99%), Postives = 94/149 (63.09%), Query Frame = 0
Query: 2 DKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEM 61
D+F R VF + D D DGK+S +L A GE++ + E A +A D+DGDGLL+
Sbjct: 5 DEFRR---VFGSFDQDGDGKISATELRLCVKASLGEDMPDEEVQALMALADTDGDGLLDE 64
Query: 62 AEFERFV-----EGDEEG-------REMREAFEMYEMEGLGVITAVSLRRMLSRLGESRT 121
EF R V +GDEE R +REAF MYEMEG G IT +SL+ MLS+LG
Sbjct: 65 EEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTHLD 124
Query: 122 VADCKRMIAKFDVNGDGVLCFDEFRVMML 139
VA+C+ MI +FD+NGDGVL FDEF+ MM+
Sbjct: 125 VAECQAMICRFDMNGDGVLTFDEFKTMMM 150
BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match:
Q9SRE6 (Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=1 SV=1)
HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 0
Query: 2 DKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEM 61
DK E+VF+ +DA+ DG++SP++L F + GE+L++ EA AAV D+DGDG+L+
Sbjct: 39 DKNRELEAVFSYMDANRDGRISPEELQKSFMTL-GEQLSDEEAVAAVRLSDTDGDGMLDF 98
Query: 62 AEFERFVEGDEEGR---EMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIA 121
EF + ++ D+E E++ AF +Y EG IT SL+ ML +LGESRT DC+ MI+
Sbjct: 99 EEFSQLIKVDDEEEKKMELKGAFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMIS 158
Query: 122 KFDVNGDGVLCFDEFRVMM 138
FD+N DGVL FDEF +MM
Sbjct: 159 AFDLNADGVLSFDEFALMM 176
BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match:
Q2QYW1 (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica OX=39947 GN=CML25 PE=3 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 74/146 (50.68%), Postives = 90/146 (61.64%), Query Frame = 0
Query: 5 SRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEF 64
S SVF D D DGKVS +L +A GEE++E EAAA +A D+DGDGLL+ EF
Sbjct: 3 SSASSVFAAFDKDGDGKVSASELRGCMAAALGEEVSEEEAAAILATADTDGDGLLDHHEF 62
Query: 65 ERF-------VEGDEEGREMREAFEMY-EMEGLGVITAVSLRRMLSRLGESR---TVADC 124
R +E R +REAF+MY E E VIT SLRRML RLG + +C
Sbjct: 63 MRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEEC 122
Query: 125 KRMIAKFDVNGDGVLCFDEFRVMMLL 140
+ MI +FD+NGDGVL FDEFRVMML+
Sbjct: 123 RAMICRFDLNGDGVLSFDEFRVMMLM 148
BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match:
Q8RYJ8 (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica OX=39947 GN=CML19 PE=3 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 3.6e-25
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 0
Query: 5 SRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEF 64
+ + VF+ D D DGK+S +L A GE+++ EA A V++ D+D DGLL+ EF
Sbjct: 6 AEFRRVFSAFDRDADGKISAAELRLCMKAALGEDMSAEEAEALVSSADTDDDGLLDEEEF 65
Query: 65 ERFV----EGDEEG--REMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIA 124
+ GDEE R + EAF MYEMEG G IT SL+RMLS+LG + + +C+ MI
Sbjct: 66 TKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSKLGSHQGIEECQTMIC 125
Query: 125 KFDVNGDGVLCFDEFRVMM 138
+FD++GDGV+ F+EF++MM
Sbjct: 126 RFDLDGDGVISFEEFKIMM 144
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022989992.1 | 2.7e-54 | 80.71 | putative calcium-binding protein CML19 [Cucurbita maxima] | [more] |
XP_022962715.1 | 1.9e-52 | 79.29 | probable calcium-binding protein CML31 [Cucurbita moschata] >KAG6601838.1 putati... | [more] |
XP_023520938.1 | 1.3e-51 | 80.29 | probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo] | [more] |
XP_038875509.1 | 2.2e-48 | 76.98 | putative calcium-binding protein CML23 [Benincasa hispida] | [more] |
XP_004150479.1 | 1.6e-46 | 73.79 | probable calcium-binding protein CML31 [Cucumis sativus] >KGN51513.1 hypothetica... | [more] |
Match Name | E-value | Identity | Description | |
Q8RYK0 | 5.9e-28 | 50.74 | Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica OX=39947 ... | [more] |
Q8RYJ9 | 1.5e-26 | 48.99 | Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica OX=39947 ... | [more] |
Q9SRE6 | 2.5e-26 | 47.48 | Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=1 SV=1 | [more] |
Q2QYW1 | 2.1e-25 | 50.68 | Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica OX=399... | [more] |
Q8RYJ8 | 3.6e-25 | 45.32 | Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica OX=39947 ... | [more] |