Lag0028935 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028935
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCalcium-binding EF-hand family protein
Locationchr8: 33167988 .. 33168407 (-)
RNA-Seq ExpressionLag0028935
SyntenyLag0028935
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA

mRNA sequence

ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA

Coding sequence (CDS)

ATGGACAAATTCTCGCGCTACGAGAGCGTATTCAACACCATAGACGCCGACTGCGACGGCAAGGTCTCGCCTCAGGATCTGCTCAGCCGGTTCTCGGCGGTCACAGGGGAGGAGCTCACGGAGGCAGAGGCGGCGGCTGCGGTAGCGGCCTTCGATTCGGACGGCGACGGGCTGCTGGAGATGGCGGAGTTCGAGAGGTTCGTGGAGGGGGATGAAGAGGGGAGGGAGATGAGAGAGGCTTTCGAGATGTATGAAATGGAGGGATTGGGAGTGATTACGGCGGTGAGCCTGCGGCGGATGCTGAGTCGGCTCGGGGAATCCAGGACCGTCGCCGATTGCAAGAGAATGATCGCTAAATTTGACGTCAATGGCGATGGAGTTCTCTGTTTTGATGAATTTAGGGTCATGATGTTGCTCTGA

Protein sequence

MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEFERFVEGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKFDVNGDGVLCFDEFRVMMLL
Homology
BLAST of Lag0028935 vs. NCBI nr
Match: XP_022989992.1 (putative calcium-binding protein CML19 [Cucurbita maxima])

HSP 1 Score: 222.2 bits (565), Expect = 2.7e-54
Identity = 113/140 (80.71%), Postives = 129/140 (92.14%), Query Frame = 0

Query: 1   MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
           M +FSRY+ VFN+ID+DCDGKVS QDLL+RF+AVTGE LTE EAAA VAA+DSD DGLLE
Sbjct: 1   MPQFSRYQRVFNSIDSDCDGKVSSQDLLTRFAAVTGEHLTEEEAAAVVAAYDSDDDGLLE 60

Query: 61  MAEFERFV-EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
           +AEFERFV EGD EG+E++EAF+MYEMEGLGVITAVSLRRMLS+LGESR++ DC RMIAK
Sbjct: 61  IAEFERFVEEGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLSQLGESRSIGDCNRMIAK 120

Query: 121 FDVNGDGVLCFDEFRVMMLL 140
           FDVNGDGVLCFDEFR+MMLL
Sbjct: 121 FDVNGDGVLCFDEFRIMMLL 140

BLAST of Lag0028935 vs. NCBI nr
Match: XP_022962715.1 (probable calcium-binding protein CML31 [Cucurbita moschata] >KAG6601838.1 putative calcium-binding protein CML31, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032546.1 putative calcium-binding protein CML31, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-52
Identity = 111/140 (79.29%), Postives = 128/140 (91.43%), Query Frame = 0

Query: 1   MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
           M +FSRY+ VFN+ID+D DGKVS QDLL+RF+AVTGEELTE EAAA VAA+DSD DGLLE
Sbjct: 1   MPQFSRYQRVFNSIDSDGDGKVSSQDLLTRFAAVTGEELTEEEAAAVVAAYDSDDDGLLE 60

Query: 61  MAEFERFVE-GDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
           +AEFER VE GD EG+E++EAF+MYEMEGLGVITAVSLRRMLS+LG+SR++ DC RMIAK
Sbjct: 61  IAEFERLVEDGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLSQLGQSRSIGDCNRMIAK 120

Query: 121 FDVNGDGVLCFDEFRVMMLL 140
           FDVNGDGVLCFDEFR+MMLL
Sbjct: 121 FDVNGDGVLCFDEFRIMMLL 140

BLAST of Lag0028935 vs. NCBI nr
Match: XP_023520938.1 (probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.3e-51
Identity = 110/137 (80.29%), Postives = 125/137 (91.24%), Query Frame = 0

Query: 1   MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
           M +FSRYE VFN+ID+D DGKVS QDLL+RF+AVTGEELTE EAAA VAA+DSD DGLLE
Sbjct: 1   MPQFSRYERVFNSIDSDGDGKVSSQDLLTRFAAVTGEELTEEEAAAVVAAYDSDDDGLLE 60

Query: 61  MAEFERFV-EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAK 120
           +AEFERFV EGD EG+E++EAF+MYEMEGLGVITAVSLRRML +LGESR++ DC RMIAK
Sbjct: 61  IAEFERFVEEGDGEGKEIKEAFKMYEMEGLGVITAVSLRRMLIQLGESRSIGDCNRMIAK 120

Query: 121 FDVNGDGVLCFDEFRVM 137
           FDVNGDGVLCFDEFR+M
Sbjct: 121 FDVNGDGVLCFDEFRIM 137

BLAST of Lag0028935 vs. NCBI nr
Match: XP_038875509.1 (putative calcium-binding protein CML23 [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 2.2e-48
Identity = 107/139 (76.98%), Postives = 120/139 (86.33%), Query Frame = 0

Query: 1   MDKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLE 60
           MDKF+    +FNTID DCDGKVSP DLL+R   +TGE+LTE +AAAAVAAFD +GDGLL+
Sbjct: 1   MDKFT---LLFNTIDTDCDGKVSPHDLLTRLPPLTGEDLTEVDAAAAVAAFDWNGDGLLD 60

Query: 61  MAEFERFVEGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKF 120
           M EF R VEGD+E  E+REAF+MYEMEGLGVIT VSLRRMLSRLGESR+V DCK+MIAKF
Sbjct: 61  MEEFGRLVEGDDE-EEVREAFQMYEMEGLGVITPVSLRRMLSRLGESRSVGDCKKMIAKF 120

Query: 121 DVNGDGVLCFDEFRVMMLL 140
           DVNGDGVLCFDEFR MMLL
Sbjct: 121 DVNGDGVLCFDEFRTMMLL 135

BLAST of Lag0028935 vs. NCBI nr
Match: XP_004150479.1 (probable calcium-binding protein CML31 [Cucumis sativus] >KGN51513.1 hypothetical protein Csa_008833 [Cucumis sativus])

HSP 1 Score: 196.4 bits (498), Expect = 1.6e-46
Identity = 107/145 (73.79%), Postives = 120/145 (82.76%), Query Frame = 0

Query: 1   MDKFSRYES-VFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLL 60
           MDK S Y + +F  ID D DGKVSP DLL+R  A+TG+ LTEAEAA+AVAAFDSDGDGLL
Sbjct: 1   MDKLSPYHTLLFYNIDTDSDGKVSPHDLLTRLPALTGQVLTEAEAASAVAAFDSDGDGLL 60

Query: 61  EMAEFERFVE-----GDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCK 120
            M EF R VE     GD++ RE+REAF+MYEMEGLGVIT VSLRRMLSRLGESR+V DCK
Sbjct: 61  GMEEFGRLVEGVVVGGDDDDREVREAFQMYEMEGLGVITPVSLRRMLSRLGESRSVGDCK 120

Query: 121 RMIAKFDVNGDGVLCFDEFRVMMLL 140
           RMIAKFD++GDGVLCFDEFR MMLL
Sbjct: 121 RMIAKFDLDGDGVLCFDEFRGMMLL 145

BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match: Q8RYK0 (Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica OX=39947 GN=CML31 PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 5.9e-28
Identity = 69/136 (50.74%), Postives = 88/136 (64.71%), Query Frame = 0

Query: 9   SVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEFERFV 68
           ++F T D D DG++S  +L        GEE+++ EA   VA+ D+DGDGLL  AEF R V
Sbjct: 14  ALFATFDHDGDGRISAAELRLCMKTTLGEEVSDEEAGQLVASVDADGDGLLCEAEFVRLV 73

Query: 69  -------EGDEEGREMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIAKFD 128
                  E +  G  +REAF MYEMEG G IT  SLRRML RLG  + + DC+ MI +FD
Sbjct: 74  QAAEVEEEDERRGTGLREAFGMYEMEGEGCITPTSLRRMLRRLGSDQDIDDCRAMICRFD 133

Query: 129 VNGDGVLCFDEFRVMM 138
           +NGDGVL FDEF++MM
Sbjct: 134 LNGDGVLSFDEFKIMM 149

BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match: Q8RYJ9 (Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica OX=39947 GN=CML23 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.5e-26
Identity = 73/149 (48.99%), Postives = 94/149 (63.09%), Query Frame = 0

Query: 2   DKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEM 61
           D+F R   VF + D D DGK+S  +L     A  GE++ + E  A +A  D+DGDGLL+ 
Sbjct: 5   DEFRR---VFGSFDQDGDGKISATELRLCVKASLGEDMPDEEVQALMALADTDGDGLLDE 64

Query: 62  AEFERFV-----EGDEEG-------REMREAFEMYEMEGLGVITAVSLRRMLSRLGESRT 121
            EF R V     +GDEE        R +REAF MYEMEG G IT +SL+ MLS+LG    
Sbjct: 65  EEFVRLVTEMEADGDEEEDDDDETCRCLREAFAMYEMEGRGCITPLSLKLMLSKLGTHLD 124

Query: 122 VADCKRMIAKFDVNGDGVLCFDEFRVMML 139
           VA+C+ MI +FD+NGDGVL FDEF+ MM+
Sbjct: 125 VAECQAMICRFDMNGDGVLTFDEFKTMMM 150

BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match: Q9SRE6 (Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.5e-26
Identity = 66/139 (47.48%), Postives = 94/139 (67.63%), Query Frame = 0

Query: 2   DKFSRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEM 61
           DK    E+VF+ +DA+ DG++SP++L   F  + GE+L++ EA AAV   D+DGDG+L+ 
Sbjct: 39  DKNRELEAVFSYMDANRDGRISPEELQKSFMTL-GEQLSDEEAVAAVRLSDTDGDGMLDF 98

Query: 62  AEFERFVEGDEEGR---EMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIA 121
            EF + ++ D+E     E++ AF +Y  EG   IT  SL+ ML +LGESRT  DC+ MI+
Sbjct: 99  EEFSQLIKVDDEEEKKMELKGAFRLYIAEGEDCITPRSLKMMLKKLGESRTTDDCRVMIS 158

Query: 122 KFDVNGDGVLCFDEFRVMM 138
            FD+N DGVL FDEF +MM
Sbjct: 159 AFDLNADGVLSFDEFALMM 176

BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match: Q2QYW1 (Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica OX=39947 GN=CML25 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 2.1e-25
Identity = 74/146 (50.68%), Postives = 90/146 (61.64%), Query Frame = 0

Query: 5   SRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEF 64
           S   SVF   D D DGKVS  +L    +A  GEE++E EAAA +A  D+DGDGLL+  EF
Sbjct: 3   SSASSVFAAFDKDGDGKVSASELRGCMAAALGEEVSEEEAAAILATADTDGDGLLDHHEF 62

Query: 65  ERF-------VEGDEEGREMREAFEMY-EMEGLGVITAVSLRRMLSRLGESR---TVADC 124
            R           +E  R +REAF+MY E E   VIT  SLRRML RLG       + +C
Sbjct: 63  MRLSAAHQLQEPAEESLRCLREAFDMYAEEEETAVITPASLRRMLRRLGSEHQRLEMEEC 122

Query: 125 KRMIAKFDVNGDGVLCFDEFRVMMLL 140
           + MI +FD+NGDGVL FDEFRVMML+
Sbjct: 123 RAMICRFDLNGDGVLSFDEFRVMMLM 148

BLAST of Lag0028935 vs. ExPASy Swiss-Prot
Match: Q8RYJ8 (Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica OX=39947 GN=CML19 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.6e-25
Identity = 63/139 (45.32%), Postives = 90/139 (64.75%), Query Frame = 0

Query: 5   SRYESVFNTIDADCDGKVSPQDLLSRFSAVTGEELTEAEAAAAVAAFDSDGDGLLEMAEF 64
           + +  VF+  D D DGK+S  +L     A  GE+++  EA A V++ D+D DGLL+  EF
Sbjct: 6   AEFRRVFSAFDRDADGKISAAELRLCMKAALGEDMSAEEAEALVSSADTDDDGLLDEEEF 65

Query: 65  ERFV----EGDEEG--REMREAFEMYEMEGLGVITAVSLRRMLSRLGESRTVADCKRMIA 124
            +       GDEE   R + EAF MYEMEG G IT  SL+RMLS+LG  + + +C+ MI 
Sbjct: 66  TKLAVQLEMGDEEERCRGLMEAFRMYEMEGEGRITPASLKRMLSKLGSHQGIEECQTMIC 125

Query: 125 KFDVNGDGVLCFDEFRVMM 138
           +FD++GDGV+ F+EF++MM
Sbjct: 126 RFDLDGDGVISFEEFKIMM 144

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022989992.12.7e-5480.71putative calcium-binding protein CML19 [Cucurbita maxima][more]
XP_022962715.11.9e-5279.29probable calcium-binding protein CML31 [Cucurbita moschata] >KAG6601838.1 putati... [more]
XP_023520938.11.3e-5180.29probable calcium-binding protein CML31 [Cucurbita pepo subsp. pepo][more]
XP_038875509.12.2e-4876.98putative calcium-binding protein CML23 [Benincasa hispida][more]
XP_004150479.11.6e-4673.79probable calcium-binding protein CML31 [Cucumis sativus] >KGN51513.1 hypothetica... [more]
Match NameE-valueIdentityDescription
Q8RYK05.9e-2850.74Probable calcium-binding protein CML31 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Q8RYJ91.5e-2648.99Putative calcium-binding protein CML23 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
Q9SRE62.5e-2647.48Calcium-binding protein CML38 OS=Arabidopsis thaliana OX=3702 GN=CML38 PE=1 SV=1[more]
Q2QYW12.1e-2550.68Probable calcium-binding protein CML25/26 OS=Oryza sativa subsp. japonica OX=399... [more]
Q8RYJ83.6e-2545.32Putative calcium-binding protein CML19 OS=Oryza sativa subsp. japonica OX=39947 ... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 112..139
e-value: 0.11
score: 21.6
coord: 76..104
e-value: 7.0
score: 10.9
coord: 6..34
e-value: 1.1
score: 17.4
coord: 43..71
e-value: 6.3
score: 11.3
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 7..68
e-value: 6.4E-11
score: 42.6
IPR002048EF-hand domainPFAMPF00036EF-hand_1coord: 112..137
e-value: 1.5E-7
score: 30.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 2..37
score: 9.910664
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 108..139
score: 11.835447
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 39..74
score: 10.468573
IPR002048EF-hand domainCDDcd00051EFhcoord: 76..137
e-value: 3.36862E-11
score: 53.3205
NoneNo IPR availableGENE3D1.10.238.10coord: 74..139
e-value: 2.5E-16
score: 61.5
NoneNo IPR availableGENE3D1.10.238.10coord: 1..73
e-value: 9.9E-13
score: 50.1
NoneNo IPR availablePANTHERPTHR10891:SF858EF HAND CALCIUM-BINDING FAMILY PROTEINcoord: 2..138
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 2..138
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 52..64
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 15..27
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 121..133
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 5..138

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028935.1Lag0028935.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding