Lag0028929 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028929
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr8: 33017467 .. 33018030 (-)
RNA-Seq ExpressionLag0028929
SyntenyLag0028929
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAACTTGTGGAGCGTTGGAAGAGATGGGCGTTGACTGAGAAGGAGATGAAGGTTATTGAGGCGGTGAATGATAATGTGCTCTTTTCAGCTGAAGATATTGGGTTATGCCTAGTTGCTAGGGTGATCTTAAGCAAACAGGTAAATTGTGATGCGTTTAGATCGGTTATGAAGGGGGCGTGGAGGGCTCATCACGGTACACGAGTGGAGTCGGCTGACAATAACATTTTCTTCATACAGTTTCGATCTGGAATGAAGAGATTGAGGGTGATGAAATCAGGTCCATGGTCCTTTGATAGGTCACTCATAGTACTAAAGTCGTTGAAGGAGAATGATCAGATTCGTGATCTGGATTTTACTGCAGAGGCGTTTTTTATCCAGGTTCATAAAGTCCCGGTCAACTGTATGACTGTTGATATGGAAAAACTGATTGGGGAGGACGTGGGAATTTTGGAGGAGGTGGATTGTGACGAGGTGAGCAATTGGTCGGGGCCGGTGATGAGAATTTGGGTGGTGGTGGACATAATGAAACCACTTCAGAGGGGGCCAAAATTAGAGTGA

mRNA sequence

ATGGACGAACTTGTGGAGCGTTGGAAGAGATGGGCGTTGACTGAGAAGGAGATGAAGGTTATTGAGGCGGTGAATGATAATGTGCTCTTTTCAGCTGAAGATATTGGGTTATGCCTAGTTGCTAGGGTGATCTTAAGCAAACAGGTAAATTGTGATGCGTTTAGATCGGTTATGAAGGGGGCGTGGAGGGCTCATCACGGTACACGAGTGGAGTCGGCTGACAATAACATTTTCTTCATACAGTTTCGATCTGGAATGAAGAGATTGAGGGTGATGAAATCAGGTCCATGGTCCTTTGATAGGTCACTCATAGTACTAAAGTCGTTGAAGGAGAATGATCAGATTCGTGATCTGGATTTTACTGCAGAGGCGTTTTTTATCCAGGTTCATAAAGTCCCGGTCAACTGTATGACTGTTGATATGGAAAAACTGATTGGGGAGGACGTGGGAATTTTGGAGGAGGTGGATTGTGACGAGGTGAGCAATTGGTCGGGGCCGGTGATGAGAATTTGGGTGGTGGTGGACATAATGAAACCACTTCAGAGGGGGCCAAAATTAGAGTGA

Coding sequence (CDS)

ATGGACGAACTTGTGGAGCGTTGGAAGAGATGGGCGTTGACTGAGAAGGAGATGAAGGTTATTGAGGCGGTGAATGATAATGTGCTCTTTTCAGCTGAAGATATTGGGTTATGCCTAGTTGCTAGGGTGATCTTAAGCAAACAGGTAAATTGTGATGCGTTTAGATCGGTTATGAAGGGGGCGTGGAGGGCTCATCACGGTACACGAGTGGAGTCGGCTGACAATAACATTTTCTTCATACAGTTTCGATCTGGAATGAAGAGATTGAGGGTGATGAAATCAGGTCCATGGTCCTTTGATAGGTCACTCATAGTACTAAAGTCGTTGAAGGAGAATGATCAGATTCGTGATCTGGATTTTACTGCAGAGGCGTTTTTTATCCAGGTTCATAAAGTCCCGGTCAACTGTATGACTGTTGATATGGAAAAACTGATTGGGGAGGACGTGGGAATTTTGGAGGAGGTGGATTGTGACGAGGTGAGCAATTGGTCGGGGCCGGTGATGAGAATTTGGGTGGTGGTGGACATAATGAAACCACTTCAGAGGGGGCCAAAATTAGAGTGA

Protein sequence

MDELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKGAWRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDFTAEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVDCDEVSNWSGPVMRIWVVVDIMKPLQRGPKLE
Homology
BLAST of Lag0028929 vs. NCBI nr
Match: XP_022155933.1 (uncharacterized protein LOC111022932 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-36
Identity = 75/186 (40.32%), Postives = 120/186 (64.52%), Query Frame = 0

Query: 1   MDELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKG 60
           MDE+ E W+ + LT+++ + I   ++  L + E++    V ++  SK+++ +AFRSVMK 
Sbjct: 1   MDEITELWENFTLTKEKEETIIIDSEKPLMTPENVQRYAVGKLHTSKRISVEAFRSVMKS 60

Query: 61  AWRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDF 120
            W+ H  T +E+A  N++ I F+S  ++ RV+ SGPWSF+ SL+VL S    DQ RD++F
Sbjct: 61  LWKVHESTHIETAGMNLYVIVFKSMAEKNRVLTSGPWSFETSLLVLTSPTATDQPRDMNF 120

Query: 121 TAEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVDCDEVSNWSGPVMRIWVVVDIMKPL 180
              A +IQ+H +P  CM  DM K +G  +G +EE+DC+    W+GP +R+ V +DI KP 
Sbjct: 121 NFFALWIQIHCIPFQCMIKDMAKFLGTRIGEVEEIDCNGSYEWTGPFIRVRVQIDISKPF 180

Query: 181 QRGPKL 187
           +RG K+
Sbjct: 181 KRGLKV 186

BLAST of Lag0028929 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 161.4 bits (407), Expect = 7.6e-36
Identity = 71/187 (37.97%), Postives = 121/187 (64.71%), Query Frame = 0

Query: 1   MDELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKG 60
           MDE+ + W+ +  T  E + +       + +A+++ LC+VA++  SK+++ +A RSVMK 
Sbjct: 1   MDEITDLWEHFKSTNDENETVTIDRGKPILTADNVKLCVVAKLHTSKRISAEAIRSVMKS 60

Query: 61  AWRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDF 120
            WR H+ TR E    NI+ I F+S  ++ RV+ SGPW+F++SL+VL S    +Q  D++F
Sbjct: 61  VWRVHNSTRFEPLGMNIYVILFKSLSEKSRVLSSGPWTFNKSLLVLTSPTATNQPLDMNF 120

Query: 121 TAEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVDCDEVSNWSGPVMRIWVVVDIMKPL 180
              AF+IQ+H +P  C++ +M  ++G  +G +EE++ D    W+GP +R+ V +D+ KPL
Sbjct: 121 NFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPL 180

Query: 181 QRGPKLE 188
           +RG KL+
Sbjct: 181 RRGIKLK 187

BLAST of Lag0028929 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 4.3e-31
Identity = 66/187 (35.29%), Postives = 117/187 (62.57%), Query Frame = 0

Query: 1   MDELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKG 60
           MD++ + W+ + L ++E   I   N   + + ++I LC V ++  SK++  +AF SVMK 
Sbjct: 1   MDDITKLWENFTLIKEEEDTIVIDNQKPILTVDNIQLCAVGKLHPSKRITVEAFASVMKQ 60

Query: 61  AWRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDF 120
            W+ H+ TR+E+A  NI+ I F++  +++RV   GPW+FD+SL++L      ++  D+D 
Sbjct: 61  VWKIHNSTRIETAGLNIYVIAFKTMAEKIRVFSLGPWTFDKSLLILVPTTAANKPLDIDI 120

Query: 121 TAEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVDCDEVSNWSGPVMRIWVVVDIMKPL 180
           +  AF++Q+H +   CMT DM K +G  +G +EEVD     +W  P + + V ++++KPL
Sbjct: 121 SLCAFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPL 180

Query: 181 QRGPKLE 188
           +RG K++
Sbjct: 181 RRGLKVK 187

BLAST of Lag0028929 vs. NCBI nr
Match: XP_022158119.1 (uncharacterized protein LOC111024676, partial [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 1.0e-27
Identity = 65/156 (41.67%), Postives = 101/156 (64.74%), Query Frame = 0

Query: 1   MDELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKG 60
           MDE+ E W+ + LT +E +     N   + +AE+I LC V ++  SK+++  A  SVMK 
Sbjct: 1   MDEITELWENFNLTNEEEETFIVDNQQPILTAENIQLCGVGKLHTSKRISAKALASVMKQ 60

Query: 61  AWRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDF 120
            W+ H  TR+E+A  NI+ I F++ +++ RV+ SGPW+FD+SL VL S    D+  D+DF
Sbjct: 61  VWKIHESTRIEAAGLNIYVIAFKTMVEKKRVLSSGPWTFDKSLFVLVSPTAADKPLDVDF 120

Query: 121 TAEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVD 157
              AF++Q+H +P   +T DM KL+G+ +G +EEVD
Sbjct: 121 RFCAFWVQIHCIPFEYLTRDMAKLLGDRLGKVEEVD 156

BLAST of Lag0028929 vs. NCBI nr
Match: KAF5475421.1 (hypothetical protein F2P56_007226 [Juglans regia])

HSP 1 Score: 122.9 bits (307), Expect = 3.0e-24
Identity = 64/182 (35.16%), Postives = 99/182 (54.40%), Query Frame = 0

Query: 2   DELVERWKRWALTEKEMKVIEAVNDNVLFSAEDIGLCLVARVILSKQVNCDAFRSVMKGA 61
           +EL  +WK + LTE+E   +   +D +  +      CL+  +I  K +N +AFR+ M   
Sbjct: 3   EELTRQWKNFKLTEQESTEMVLSSDTMEMAMHQGKFCLLGMIIAEKPINKEAFRNTMIKV 62

Query: 62  WRAHHGTRVESADNNIFFIQFRSGMKRLRVMKSGPWSFDRSLIVLKSLKENDQIRDLDFT 121
           W++    +      N F I+F     R RV+K  PWSFDR L+ L + + N  + D+ FT
Sbjct: 63  WKSEGWVQFTEVGENSFLIEFNKDEDRQRVIKGRPWSFDRWLLCLHAFEGNMPVNDIQFT 122

Query: 122 AEAFFIQVHKVPVNCMTVDMEKLIGEDVGILEEVDCDEVSNWSGPVMRIWVVVDIMKPLQ 181
            E F++QVH +P+  MT ++ K IG++VG + +V  D+     G  MRI V +D  K L 
Sbjct: 123 REEFWLQVHNMPLGTMTEEVGKQIGKNVGKVLKVHSDDRGIGWGKFMRIRVEMDKTKALM 182

Query: 182 RG 184
           RG
Sbjct: 183 RG 184

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022155933.12.6e-3640.32uncharacterized protein LOC111022932 [Momordica charantia][more]
XP_022149484.17.6e-3637.97uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022156711.14.3e-3135.29uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_022158119.11.0e-2741.67uncharacterized protein LOC111024676, partial [Momordica charantia][more]
KAF5475421.13.0e-2435.16hypothetical protein F2P56_007226 [Juglans regia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 32..172
e-value: 8.3E-21
score: 74.0
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 13..186
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 13..186

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028929.1Lag0028929.1mRNA