Lag0028891 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028891
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr8: 32364693 .. 32365100 (+)
RNA-Seq Expression	Lag0028891
Synteny	Lag0028891

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTTGGGCAACTATGGCGGATGAGAAGACGAGCTTCGAAACTGCGATCGAAAATGGCGTCGCCGTTGAGATTCCTGACGAAGTTTCACGACGCGTATGTCGAGATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA

mRNA sequence

ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTTGGGCAACTATGGCGGATGAGAAGACGAGCTTCGAAACTGCGATCGAAAATGGCGTCGCCGTTGAGATTCCTGACGAAGTTTCACGACGCGTATGTCGAGATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA

Coding sequence (CDS)

ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTTGGGCAACTATGGCGGATGAGAAGACGAGCTTCGAAACTGCGATCGAAAATGGCGTCGCCGTTGAGATTCCTGACGAAGTTTCACGACGCGTATGTCGAGATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA

Protein sequence

MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPLRFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLEIYNKLAASKNLAAAF

Homology

[Close]

BLAST of Lag0028891 vs. NCBI nr
Match: KAG7016737.1 (hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-51
Identity = 108/131 (82.44%), Postives = 116/131 (88.55%), Query Frame = 0


Query: 1   MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPL 60
           MDII+TPSA SLKRLWRRRRYQRLGS  G  R SRSFRLG+LWRMRRRA KLR KMASPL
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFRLGRLWRMRRRAPKLRLKMASPL 60

Query: 61  RFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
           + L +FHDAYV+MM RVA +VGNMYAIG FGNGKRIPKP+NQ+SLVSCGGE VDAKLVLE
Sbjct: 61  KVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLE 120

Query: 121 IYNKLAASKNL 132
           IYNKLA SKNL
Sbjct: 121 IYNKLAVSKNL 130

[Close]

BLAST of Lag0028891 vs. NCBI nr
Match: XP_022152306.1 (uncharacterized protein LOC111020054 [Momordica charantia])

HSP 1 Score: 211.1 bits (536), Expect = 6.1e-51
Identity = 110/138 (79.71%), Postives = 122/138 (88.41%), Query Frame = 0


Query: 1   MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPL 60
           M+II+TPS++S++R WRRR+YQRLGSSNGPTR SRSFRLG+LWRMRR A +LR KMASPL
Sbjct: 1   MEIIATPSSESIRRTWRRRKYQRLGSSNGPTR-SRSFRLGRLWRMRRGAPRLRFKMASPL 60

Query: 61  RFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNG---KRIPKPQNQVSLVSCGGEHVDAKL 120
           + L +FHDAYVEMMMRVA  VGNMYAIGAFG G   + IPKP NQVSLVSCGGE VDAKL
Sbjct: 61  KLLARFHDAYVEMMMRVANGVGNMYAIGAFGGGGKRRMIPKPGNQVSLVSCGGEQVDAKL 120

Query: 121 VLEIYNKLAASKNLAAAF 136
           VLEIYNKLAASKNLAAAF
Sbjct: 121 VLEIYNKLAASKNLAAAF 137

[Close]

BLAST of Lag0028891 vs. NCBI nr
Match: KAG6579224.1 (hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 210.3 bits (534), Expect = 1.0e-50
Identity = 108/131 (82.44%), Postives = 116/131 (88.55%), Query Frame = 0


Query: 1   MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPL 60
           MDII+TPSA SLKRLWRRRRYQRLGS  G  R SRSFRLG+LWRMRRRA KLR KMASPL
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGMGAAR-SRSFRLGRLWRMRRRAPKLRLKMASPL 60

Query: 61  RFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
           + L +FHDAYV+MM RVA +VGNMYAIG FGNGKRIPKP+NQ+SLVSCGGE VDAKLVLE
Sbjct: 61  KVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLE 120

Query: 121 IYNKLAASKNL 132
           IYNKLA SKNL
Sbjct: 121 IYNKLAVSKNL 130

[Close]

BLAST of Lag0028891 vs. NCBI nr
Match: XP_022939174.1 (uncharacterized protein LOC111445168 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 107/134 (79.85%), Postives = 115/134 (85.82%), Query Frame = 0


Query: 1   MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPL 60
           MDII+TPSA SLKRLWRRRRYQRLGS  G  R SRSF LG+LWRMRRRA KLR KMA P 
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFHLGRLWRMRRRAPKLRLKMALPF 60

Query: 61  RFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
           + L +FHDAYV+MM RVA  VGNMYAIG FGNGKRIPKP+NQVSLVSCGGE VDAKLVLE
Sbjct: 61  KALARFHDAYVKMMTRVANKVGNMYAIGGFGNGKRIPKPRNQVSLVSCGGEQVDAKLVLE 120

Query: 121 IYNKLAASKNLAAA 135
           +YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133

[Close]

BLAST of Lag0028891 vs. NCBI nr
Match: XP_022993314.1 (uncharacterized protein LOC111489358 [Cucurbita maxima])

HSP 1 Score: 206.5 bits (524), Expect = 1.5e-49
Identity = 106/134 (79.10%), Postives = 116/134 (86.57%), Query Frame = 0


Query: 1   MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGQLWRMRRRASKLRSKMASPL 60
           MDII+TPSA SLKRLWRRRRYQRLGS  G  R SRSFRLG+LWR+RRRA KLR KM SP 
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFRLGRLWRIRRRAPKLRLKMVSPF 60

Query: 61  RFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
           + L +FHDAYV+MMMRVA SVG+MYAIG +GNGKRIPKP NQVSLVSCGGE VD KLVLE
Sbjct: 61  KALARFHDAYVKMMMRVANSVGSMYAIGGYGNGKRIPKPSNQVSLVSCGGEQVDTKLVLE 120

Query: 121 IYNKLAASKNLAAA 135
           +YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133

The following BLAST results are available for this feature:

BLAST of Lag0028891 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7016737.1	6.1e-51	82.44	hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022152306.1	6.1e-51	79.71	uncharacterized protein LOC111020054 [Momordica charantia]	[more]
KAG6579224.1	1.0e-50	82.44	hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022939174.1	1.5e-49	79.85	uncharacterized protein LOC111445168 [Cucurbita moschata]	[more]
XP_022993314.1	1.5e-49	79.10	uncharacterized protein LOC111489358 [Cucurbita maxima]	[more]

BLAST of Lag0028891 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33702:SF2	SUBFAMILY NOT NAMED	coord: 1..133
None	No IPR available	PANTHER	PTHR33702	BNAA09G40010D PROTEIN	coord: 1..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028891.1	Lag0028891.1	mRNA