Lag0028847 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028847
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr8: 31760358 .. 31761697 (+)
RNA-Seq Expression	Lag0028847
Synteny	Lag0028847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGACCGCCACCAGCGAAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCATAGGCCGAGGGGCCGAGGCCAAGCAGAGGATGCTGATGCCAAAATTGCCGCCCTTGAGGATGAGGTGAAGGGAATGAATCAGAGTTTGTCTAGAATACTCCAGATCCTGGATAAACCCGGTCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATACGTGGATGAATTAGAGACAGAATCCAAAGGAAAGAAGACCAACAACACAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGCACAGAGTGGCCAAAACTGCTGAGTCTAAGGCCAGAGCTGCTGAGGCCGAGGCCAAAGCTGCCGAGGCTGAGGCCAAGGCAGCCGAGGCCGAGGCTAAGAAAGACCATCTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCATGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGGCAAGACATGGAAGAGCTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCCCAGAAGTTCAAGGTACCTACATTCAAGTCGTATGATGGCAAGAAAGACCCTGTCCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCATGCATTCTTTTTCACCCTAACAGGATCAGCCAGGCATTGGTTTGAAAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTACACAGTTCATGGGGGCCAGAGAACTGCGCCAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGCCAGGTGAGAGCTTGTGTGATTACATAACGCGTTTTAATGACGAAGCACTACAGGTTGAGGGTACAGCGAGGGAGCAGCCCTAGTAGCCATAACAGCCAGACTGGAAGACGAAAGACTGCTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAATGTCTTCTTCATCTAACTACGACAATAAGAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTCGAAAAGTACACCCCTACTTCAGTCCCATAG

mRNA sequence

ATGGTGACCGCCACCAGCGAAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCATAGGCCGAGGGGCCGAGGCCAAGCAGAGGATGCTGATGCCAAAATTGCCGCCCTTGAGGATGAGGTGAAGGGAATGAATCAGAGTTTGTCTAGAATACTCCAGATCCTGGATAAACCCGGTCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATACGTGGATGAATTAGAGACAGAATCCAAAGGAAAGAAGACCAACAACACAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGCACAGAGTGGCCAAAACTGCTGAGTCTAAGGCCAGAGCTGCTGAGGCCGAGGCCAAAGCTGCCGAGGCTGAGGCCAAGGCAGCCGAGGCCGAGGCTAAGAAAGACCATCTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCATGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGGCAAGACATGGAAGAGCTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCCCAGAAGTTCAAGGTACCTACATTCAAGTCGTATGATGGCAAGAAAGACCCTGTCCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCATGCATTCTTTTTCACCCTAACAGGATCAGCCAGGCATTGGTTTGAAAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTACACAGTTCATGGGGGCCAGAGAACTGCGCCAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGCCAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAATGTCTTCTTCATCTAACTACGACAATAAGAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTCGAAAAGTACACCCCTACTTCAGTCCCATAG

Coding sequence (CDS)

ATGGTGACCGCCACCAGCGAAGGTCACGAGACGATGATAACATCCGGGGGTCACCGAGACGAACAGGCTGAGGAGCATAGGCCGAGGGGCCGAGGCCAAGCAGAGGATGCTGATGCCAAAATTGCCGCCCTTGAGGATGAGGTGAAGGGAATGAATCAGAGTTTGTCTAGAATACTCCAGATCCTGGATAAACCCGGTCCTAGCACCAAACTCCATGAGGGGGGCTTGATTAGAGACCCGAGGAAGGGGAAGAATCCAGTCGAATACGTGGATGAATTAGAGACAGAATCCAAAGGAAAGAAGACCAACAACACAACCAGCAAGGTCAGGGGGCTGAAGCACACAGAGCGCACAGTACTGAGGAGCCCTGAATCAAGTACCAGCCGTAGAACAGACCTGAGAAATCTGATCGAGGAAAAGCACAGAGTGGCCAAAACTGCTGAGTCTAAGGCCAGAGCTGCTGAGGCCGAGGCCAAAGCTGCCGAGGCTGAGGCCAAGGCAGCCGAGGCCGAGGCTAAGAAAGACCATCTCCCTTGGAAGACTGAGCTTCTAAACACACTAAAGGAGCATGGAAATCCTCAGGGAGACCTGCCTAAGTTGAAGGATTCGGGAGGGCAAGACATGGAAGAGCTAATCGACCAAGTCGACCCACCCTTCACAGAAGAAGTCATGAAAGCTGAGATGCCCCAGAAGTTCAAGGTACCTACATTCAAGTCGTATGATGGCAAGAAAGACCCTGTCCAGCATCTAAATGCCTACAAAAGCTGGATGGACTTCCACGGCGTCTCAGATGCAATCAGGTGCCATGCATTCTTTTTCACCCTAACAGGATCAGCCAGGCATTGGTTTGAAAGGCTGAAAAGGAGATCCATCAGCTGTTTCAAGGATTTAGCCCGAGCATTCCTTACACAGTTCATGGGGGCCAGAGAACTGCGCCAGCCTCACATCAACCTCTTAACAGTCAAACAGCAGCCAGGTAAGAGCCAACCTCGAACCTATGCGGAGTTTGTCTCCCGGGCACAGAAATACATGAGCGCAGAGGAATTGCTCAAGTCAAAGAAGACGGAACGAGAGCACAAAATGTCTTCTTCATCTAACTACGACAATAAGAAGGACAAAAGGCAGCGGACCGACGAGGGAGGCCGAGGCCGACCAGACCAAGGAGACTACTTGAAGAAGTTCGAAAAGTACACCCCTACTTCAGTCCCATAG

Protein sequence

MVTATSEGHETMITSGGHRDEQAEEHRPRGRGQAEDADAKIAALEDEVKGMNQSLSRILQILDKPGPSTKLHEGGLIRDPRKGKNPVEYVDELETESKGKKTNNTTSKVRGLKHTERTVLRSPESSTSRRTDLRNLIEEKHRVAKTAESKARAAEAEAKAAEAEAKAAEAEAKKDHLPWKTELLNTLKEHGNPQGDLPKLKDSGGQDMEELIDQVDPPFTEEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSARHWFERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQPGKSQPRTYAEFVSRAQKYMSAEELLKSKKTEREHKMSSSSNYDNKKDKRQRTDEGGRGRPDQGDYLKKFEKYTPTSVP

Homology

[Close]

BLAST of Lag0028847 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-36
Identity = 135/372 (36.29%), Postives = 187/372 (50.27%), Query Frame = 0


Query: 76  LIRDPRKGKNPVEYVDELETESKGKKTNNTTSKVR-GLKHTERTVLRSPESSTSRRTDLR 135
           L+RDP+KGK P     E +TE   + TN+  SK+R G    +RT +  P     R+T   
Sbjct: 74  LVRDPKKGKGPT----ESDTE---ESTNSVGSKLRIGGNTRQRTRIFDP-----RKT--- 133

Query: 136 NLIEEKHRVAKTAESKARAAEAEAKAAEAEAKAAEAEAKKDHLPWKTELLNTLKEHGNPQ 195
              +++H+       K+   +  ++    +      + K    P  +E  ++ KE     
Sbjct: 134 ---KKQHKSPAPNGGKSDHDDRNSEPISLD------KGKPADRPESSEKRHSHKEK---- 193

Query: 196 GDLPKLKDSGGQDMEELIDQVDPPFTEEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYK 255
                     G D+EEL+DQ D PFTEE+M+ ++P KFK+PT K +D   DPV HL+AY+
Sbjct: 194 ----------GFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYR 253

Query: 256 SWMDFHGVSDAIRCHAFFFTLTGSARHWFERLKRRSISCFKDLARAFLTQFMGARELRQP 315
            WMD +GVS+A+RC  F  TL GSAR WF +LKR SIS FK LARAF+TQF+G R   +P
Sbjct: 254 EWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRP 313

Query: 316 HINLLTVKQQP-------------------------------------------GKSQPR 375
              LLT+KQ+                                            GK  P 
Sbjct: 314 VAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPN 373

Query: 376 TYAEFVSRAQKYMSAEELLKSKKTEREHKMSSSSNYDNKKDKRQRTDEGGRGRPDQGDYL 404
           T++E +SRAQ+YMSA E   SK+ E + K +     +   DK Q +    R R  Q D  
Sbjct: 374 TFSEALSRAQRYMSAGEFFYSKR-EPDGKRTDPKR-ERSGDKPQGSRWEKRDRSSQKDPP 405

[Close]

BLAST of Lag0028847 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-32
Identity = 98/233 (42.06%), Postives = 127/233 (54.51%), Query Frame = 0


Query: 205 GQDMEELIDQVDPPFTEEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSD 264
           G D+EEL+ Q D PFTEE+M+ ++P KFK+PT K +DG  +PV HL+AY+ WMD +GVSD
Sbjct: 71  GFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSD 130

Query: 265 AIRCHAFFFTLTGSARHWFERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQ 324
           AIRC  F  TL GSAR WF +LKR SIS FK LARAF+TQF+G R   +P   LLT+KQ+
Sbjct: 131 AIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQR 190

Query: 325 PGKS-------------------------------------------QPRTYAEFVSRAQ 384
             +S                                            P T++E +SRAQ
Sbjct: 191 TAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALSRAQ 250

Query: 385 KYMSAEELLKSKKTEREHKMSSSSNYDNKKDKRQRTDEGGRGRPDQGDYLKKF 395
           +YMSA E   SK+ E + K +     +   DK Q +    R R  Q D  +KF
Sbjct: 251 RYMSASEFCYSKR-EPDGKRTDQKR-ERSGDKPQGSRWEKRDRGSQKDPPRKF 301

[Close]

BLAST of Lag0028847 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 143.3 bits (360), Expect = 4.6e-30
Identity = 89/231 (38.53%), Postives = 120/231 (51.95%), Query Frame = 0


Query: 224 MKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSARHWF 283
           MK ++P KFK+P  K YDG  DP+ HL+ Y  W D +G+++AIRC  F FTLTGS R WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 284 ERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP------------------ 343
           ++LKR+SIS FK+LARAF+TQF G     +P   LLT+KQ+                   
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQV 120

Query: 344 -------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTEREHK 403
                                    GK    T++E  SRAQ YMS  EL+ SK+  +   
Sbjct: 121 EGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSVGELIHSKRDPK--- 180

[Close]

BLAST of Lag0028847 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 8.2e-27
Identity = 84/220 (38.18%), Postives = 112/220 (50.91%), Query Frame = 0


Query: 224 MKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSARHWF 283
           MK +   KFK+P    YDG  DP+ HL+AY+ W D + + +AIRC  F FTLTGSAR+WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 284 ERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP------------------ 343
            +LKR SIS FK+LA AF+TQF+G R   +P   LLT+KQ+                   
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQV 120

Query: 344 -------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTEREHK 397
                                    GK  P T+ E +SRAQKYMSA EL+   +     +
Sbjct: 121 EGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIHLSRDLERER 180

[Close]

BLAST of Lag0028847 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 132.5 bits (332), Expect = 8.2e-27
Identity = 84/198 (42.42%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 221 EEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSAR 280
           EE+MK ++P KFK+PT K +DG  D V HL+AY+ WMD +GVS+A++C  F  TL+GSAR
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 281 HWFERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP--------------- 340
            WF +LKR SIS FK LA+AF+TQF+G R   +P   LLT+KQ+                
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEK 121

Query: 341 ----------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTER 376
                                       GK  P T++E +SRAQKYMSA E   SK+ E 
Sbjct: 122 LQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKR-EP 181

[Close]

BLAST of Lag0028847 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-36
Identity = 135/372 (36.29%), Postives = 187/372 (50.27%), Query Frame = 0


Query: 76  LIRDPRKGKNPVEYVDELETESKGKKTNNTTSKVR-GLKHTERTVLRSPESSTSRRTDLR 135
           L+RDP+KGK P     E +TE   + TN+  SK+R G    +RT +  P     R+T   
Sbjct: 74  LVRDPKKGKGPT----ESDTE---ESTNSVGSKLRIGGNTRQRTRIFDP-----RKT--- 133

Query: 136 NLIEEKHRVAKTAESKARAAEAEAKAAEAEAKAAEAEAKKDHLPWKTELLNTLKEHGNPQ 195
              +++H+       K+   +  ++    +      + K    P  +E  ++ KE     
Sbjct: 134 ---KKQHKSPAPNGGKSDHDDRNSEPISLD------KGKPADRPESSEKRHSHKEK---- 193

Query: 196 GDLPKLKDSGGQDMEELIDQVDPPFTEEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYK 255
                     G D+EEL+DQ D PFTEE+M+ ++P KFK+PT K +D   DPV HL+AY+
Sbjct: 194 ----------GFDLEELLDQADSPFTEEIMREKVPPKFKLPTVKQFDXTTDPVDHLDAYR 253

Query: 256 SWMDFHGVSDAIRCHAFFFTLTGSARHWFERLKRRSISCFKDLARAFLTQFMGARELRQP 315
            WMD +GVS+A+RC  F  TL GSAR WF +LKR SIS FK LARAF+TQF+G R   +P
Sbjct: 254 EWMDIYGVSEAVRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRP 313

Query: 316 HINLLTVKQQP-------------------------------------------GKSQPR 375
              LLT+KQ+                                            GK  P 
Sbjct: 314 VAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLSFSFGKRTPN 373

Query: 376 TYAEFVSRAQKYMSAEELLKSKKTEREHKMSSSSNYDNKKDKRQRTDEGGRGRPDQGDYL 404
           T++E +SRAQ+YMSA E   SK+ E + K +     +   DK Q +    R R  Q D  
Sbjct: 374 TFSEALSRAQRYMSAGEFFYSKR-EPDGKRTDPKR-ERSGDKPQGSRWEKRDRSSQKDPP 405

[Close]

BLAST of Lag0028847 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 8.2e-33
Identity = 98/233 (42.06%), Postives = 127/233 (54.51%), Query Frame = 0


Query: 205 GQDMEELIDQVDPPFTEEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSD 264
           G D+EEL+ Q D PFTEE+M+ ++P KFK+PT K +DG  +PV HL+AY+ WMD +GVSD
Sbjct: 71  GFDLEELLGQADSPFTEEIMREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSD 130

Query: 265 AIRCHAFFFTLTGSARHWFERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQ 324
           AIRC  F  TL GSAR WF +LKR SIS FK LARAF+TQF+G R   +P   LLT+KQ+
Sbjct: 131 AIRCRVFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQR 190

Query: 325 PGKS-------------------------------------------QPRTYAEFVSRAQ 384
             +S                                            P T++E +SRAQ
Sbjct: 191 TAESLHDYVARFNEEKLQLEGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALSRAQ 250

Query: 385 KYMSAEELLKSKKTEREHKMSSSSNYDNKKDKRQRTDEGGRGRPDQGDYLKKF 395
           +YMSA E   SK+ E + K +     +   DK Q +    R R  Q D  +KF
Sbjct: 251 RYMSASEFCYSKR-EPDGKRTDQKR-ERSGDKPQGSRWEKRDRGSQKDPPRKF 301

[Close]

BLAST of Lag0028847 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.2e-30
Identity = 89/231 (38.53%), Postives = 120/231 (51.95%), Query Frame = 0


Query: 224 MKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSARHWF 283
           MK ++P KFK+P  K YDG  DP+ HL+ Y  W D +G+++AIRC  F FTLTGS R WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 284 ERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP------------------ 343
           ++LKR+SIS FK+LARAF+TQF G     +P   LLT+KQ+                   
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQV 120

Query: 344 -------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTEREHK 403
                                    GK    T++E  SRAQ YMS  EL+ SK+  +   
Sbjct: 121 EGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSVGELIHSKRDPK--- 180

[Close]

BLAST of Lag0028847 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-27
Identity = 84/220 (38.18%), Postives = 112/220 (50.91%), Query Frame = 0


Query: 224 MKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSARHWF 283
           MK +   KFK+P    YDG  DP+ HL+AY+ W D + + +AIRC  F FTLTGSAR+WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 284 ERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP------------------ 343
            +LKR SIS FK+LA AF+TQF+G R   +P   LLT+KQ+                   
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQV 120

Query: 344 -------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTEREHK 397
                                    GK  P T+ E +SRAQKYMSA EL+   +     +
Sbjct: 121 EGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIHLSRDLERER 180

[Close]

BLAST of Lag0028847 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 4.0e-27
Identity = 84/198 (42.42%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 221 EEVMKAEMPQKFKVPTFKSYDGKKDPVQHLNAYKSWMDFHGVSDAIRCHAFFFTLTGSAR 280
           EE+MK ++P KFK+PT K +DG  D V HL+AY+ WMD +GVS+A++C  F  TL+GSAR
Sbjct: 2   EEIMKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSAR 61

Query: 281 HWFERLKRRSISCFKDLARAFLTQFMGARELRQPHINLLTVKQQP--------------- 340
            WF +LKR SIS FK LA+AF+TQF+G R   +P   LLT+KQ+                
Sbjct: 62  VWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEK 121

Query: 341 ----------------------------GKSQPRTYAEFVSRAQKYMSAEELLKSKKTER 376
                                       GK  P T++E +SRAQKYMSA E   SK+ E 
Sbjct: 122 LQVEGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKR-EP 181

The following BLAST results are available for this feature:

BLAST of Lag0028847 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	5.6e-36	36.29	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022159109.1	1.7e-32	42.06	uncharacterized protein LOC111025548 [Momordica charantia]	[more]
XP_022147761.1	4.6e-30	38.53	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	8.2e-27	38.18	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022150035.1	8.2e-27	42.42	uncharacterized protein LOC111018307 [Momordica charantia]	[more]

BLAST of Lag0028847 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	2.7e-36	36.29	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1E1E7	8.2e-33	42.06	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D3B7	2.2e-30	38.53	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DZ49	4.0e-27	38.18	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D7D2	4.0e-27	42.42	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Lag0028847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 34..54
None	No IPR available	COILS	Coil	Coil	coord: 137..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..403
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 350..393
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 271..341 e-value: 3.9E-7 score: 30.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028847.1	Lag0028847.1	mRNA