Lag0028756 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028756
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr8: 30055506 .. 30060759 (+)
RNA-Seq Expression	Lag0028756
Synteny	Lag0028756

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTTACGTGGCCGATGATGTGGCATCCGACGTGGCATGCAAATCGATTAGAATTGATGACGTGGCACTCCAACGATCACTTTTTGTTGACGTGGTGATGACGTGGAAGGTGACATGGCTGATGACGTGGCGATCGTGGACGAATGAGATCATGACACGTGGTGGCTGATTTTAAAAAAAAAGAGGGGATAAATCACCGGCGGACGTGTGGCTCAATAGGACATCGACACGTGGCGTTATTTGAATTGTCCCGCCTTTATTTTGCATTAAAAAAAAGGAAAATGAAATTTGCTGGCTGTTGTCTTCCTCACGCGCTAACGCGAGCGTGCGTTGCACGCACCTGTCTTCTCTTCAGCCAAATGCGCGCATGACCGTCACTCCCTCCCTGTGCGCGTGGGCGTTCGTTCGTCCGGCCATTTTTAATTTTCTTTTTATTTTTTTTAATTTTCTTCAATTTCCTGATACACATTTTCTAAAAAATTTTCTAAATTTTCACCCAAAATTCCTTCCAATTCAAATTTTATTCTTTCCAAAATCCATCCCAAAAATCCTTGATTTATTCTCATTATCTCCAGAATTCCATATCTTCAAAATTTGCTCTTAATTTCAAATTTCTTTTCTTTTCCAATTTTAAATTCAATCTCCACCATCCATCCTTAGTTTGATCCAACGGTAAATACTCATCCTCCTCGCCTATAAATTGGACTTGATTTTCCCATTCATTCACACACTCAAAGACATCAAAGTCTTAAACTCTCAAGTCTCCTTACTCTCCAATCTTGTCAAAATTCTTCCCTTGCTCCTAAATTGGCCTATTGTTATTTTGTGAGGTTTTATTATTGTGAGTGCTCAACCTTGTGTAATTAGCCTTCAAGAGGTATTTTATTTTGTGAGCTTCTCTTCTTCTTTTATCATTGGGAACTTGTAATAAGGTGTGGGTGCACCTTGGGAATTGAGTGAATGGTTTGATCGTGAACCCGAAAAAGGATTTGTAGTGGTTTGATCCTGAACCCGGTTAAAAAGGATCCTAGTGGTTTGATCTTGAACCCGTTTAAAAAGATCGGTATAGGTTGGGTCCTGAACTTGTAAAAGGATCGGTAAAGGTCTACTCTTGAACCTGAAAAAGAGTCGGTTTGGTTCTCACCCGTAAGAGAGCTGTTGCAGTAAAATACCCAAGAAGGAGTCTTGGGGAGTGGAGTAGGAATTTCCGAACCACTATAAAATTTCCTGGTGTTATCTCTTTCTCTCTACTCTTTTAATTTCCGCTATTTCATTTTTATGAGTAGATTGCATGCCTAGGAAAATTGTCAAATATTTCTAGCATACTTTATGCTTTATAGTGCTTATTAAATTTATTTAGTTTAAATCAATTCCATTTAATTTAGCAAAAAGTTTTAAATTTTATTAAGCAAATCTATTCACCCCCCTCTAGTGTTGCCCTACGATCCTACAAATTTGTTTCTTCAACATGTATAGTTATATGAGTGCCTCATTTATACGCCAAATTCATTATTGGTATTCATCATACGACTAAGAAAACACACTTAACTCGTGGTGAGTGATTTCGAAACGGTCTTAAAATCGAGGAACGTCCTCAAACTCCTATGTCTACTTCATCTCAAAATGTTTGTAATGAATATAACATAGGAACACTACCAAGCCAAAAGAAAGAACATCAGAGACTCTAAATATGAGTTATTCATCTTGAAAACGTGCTTAGTAAAGAATAATGATTCAACTTGGATCTTTGATTCAGGTGGCACTAATCACGTATGTTCTTCCTTTCACAAATAGGTTCCTGGCAACTCTAATATATAATTATGAATTAAATTATATTTGAAACAGGAGATTTCATCTCAGCTATGGCAGTGAGAGACATAAAAAATTGTTCTTCTCCAAGGTGCGTTACATTTTATTTAATGATGTATACATAGTTCCTAAGATTAAAAGAAGTTTAACTTCTATATCTTGTTTGCTAGAACAAGGCTATTTTATTACCTTTTAAATATATGAACTATTCATTCCAAAAAGGATGCCGATATTTGTTCTGCAATATGAAGAATAACATATATGTCTTAAGACTGATAGAGTCTAAAGAAATTTTTATGAGATATTTAAAACCGTTGAGACTCACCCTAAAAGGGAAAAGTGTTTCTCTAAGTACCTATCTTTCGCACTTGAGGGTAGGCCATATAAATCTCAATAGAATTGGGAATTGGTCAAATATGAACTTCTAAACAAATTAGAAGACGATTCGTTGTCTCCTAGTAAGTCATGCCTTGAGAGCAAGATGACTAAACAACTTTTTCTGGAAAAGGGTATTGTGCCAAAAAACCCTTAGAGCTAATGCATTCTGATCTCTGAAATCAATGAATGACAAAAACTCTAACAGGGCATGAATAATTCATTGATGATTATTCAAGTTACACTATCGCAGTAGAGAGTATAAGGACTCAGAATTCTAGGACTATTTATTAGAACATGGAACTAAATCCTAAACTCTCAACTACAGATATGCCTCAGAAAATAAAATATTGGAAAGGAGAAACATAACCTTGTTCGACATGGTTCGTTAGATATTAAGCTATGCTCAATTTTCTAACTCGTTTTGGGATTAATCAGTCAAGACTGTAGTTAATATTCTGAATCTGGTTCCCTCAAAGAGTGTTTTTGAAACACCGTTTGAGTTCTAGAGAAGGCGTAAAACGATTTTACGTCATTTTAGAGTTTTGGGGACGTCTTACATTTGTGCTATAGACAAACCCAGATAAATTGGAACCTCGTTATAAAATATGCCTATTTGTAGGTTATCCCAAAGAAACGAGAGGTGGATACTTCTTCAATCCAGTAGAAAATAAAGTATTTGTATCGACAAATGCAATTTTCTTAGAAGAAGACCACGTTTGAGATCACAAACCACGCAGTAAGATAGTGTTTATAGTAAGTTATCTAGTGAAGCTACAGTTGAATCAACAACAGTTGTTGATTAGGTTAGTCCTTCAACAGGAGTTTTTTATTGAGCTAACACATTGAGTCAGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTAAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTCATATAGCAAGGTCAAGAGCAAAATGTTTGCAAGCTTAAACAATCCATTTATGAATTGAAATAAGCATCTCGGTCTTGGAACATAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACATAACATTGATGACGCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTTATCTAACTGACATTAAAAGGTAGCTAGCAATCCAGTTCCAAATAAGAGTTTTGGAAAATGGATCCATATGTTCTTAGAATCCAAAAGAACAAAACGTTGGCCCTGTCTCAAGCTTCTTATATCGACAAGCTGTTGGTTTGATATAAGATGCATAATTCCAACAAAGGTTTTGTTGCCTTTCAGGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGAGGACATGAGAAATATTCCCTATGCCTCAACAATAGGCAACCAGGTCTGGCATATGGTATACATAGGGATTGTCAGTATACAACAATTCAGTCCACGGTAAGTGTCACACCCCCTCCCGAACTACTAGCTAGCATAGTTCAGAAGACGACGTGAAGCCAGCGGACATCGTCCTCCTCTAACGATACCTGCTGACTCTACTGAACCCTTGAACTTGATAAACATGCTAATCTTAGATATGAAATACTTTATATGCAATACAACCCAGCGGAACCTTGATAACCTTAGGCATACATGAAATGTAGCCCTGACTTAACTCACTATGGAAAATAAACCTAATAGAGACATCACAACAAAAAACATATTCAACTAGGGTTTACACAACCACAACTTCTAGAGCTTACACAATCCGTAAACTATCCAATCCTTACAAAAAAATTTACAATATAAACAGACTCGATGTACAACTCCACCCACGTACTGGAAATCGATTTGGGAGCTTTTAGCAGACTATGGTAGTTTATCAGGCTTTGGGAGCTCAAACTCTACCTGGAAAATGGGAAAACATTTTGAAAGGGTGAGCTATGAAGCCCAGTGAGTGACTAAATTTAAAACTATTAATCCGCAAACTATTAATCGACAAATGCAATTTTCTTAGAAGAAGACCACGTTTGAGATCACAAACCACGCAGTAAGATAGTGTTTATAGTAAGTTATCTAGTGAAGCTACAGTTGAATCAACAACAGTTGTTGATCAGGTTAGTCCTTCAACAGGAGTTTTTTATTGAGCTAACACATTGAGTCAGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTGAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTCATATAGCAAGGTCAAGAGCAAAATGTTTGCAAGCTTAAACAATCCATTTATGAATTGAAATAAGCATCTCGATCTTGGAACATAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACAGAACATTGATGACCCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTTATCTAACTGACATTAAAAGGTAGCTAGCAATCCAGTTCCAAATAAGAGTTTTGGAAAATGGATCCATATGTTCTTAGAATCCAAAAGAACAAAACGTTGGCCCTGTCTCAAGCTTCTTATATCGACAAGCTGTTGGTTTGATATAAGATGCATAATTCCAACAAAGGTTTTGTTACCTTTCAGGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGA

mRNA sequence

ATGGCAGCTTACGTGGCCGATGATGTGGCATCCGACGTGGCATGCAAATCGATTAGAATTGATGACGTGGCACTCCAACGATCACTTTTTGTTGACGTGGTGATGACGTGGAAGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTAAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACATAACATTGATGACGCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGAGGACATGAGAAATATTCCCTATGCCTCAACAATAGGCAACCAGGTCTGGCATATGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTGAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACAGAACATTGATGACCCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTTATCTAACTGACATTAAAAGGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGA

Coding sequence (CDS)

ATGGCAGCTTACGTGGCCGATGATGTGGCATCCGACGTGGCATGCAAATCGATTAGAATTGATGACGTGGCACTCCAACGATCACTTTTTGTTGACGTGGTGATGACGTGGAAGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTAAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACATAACATTGATGACGCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGAGGACATGAGAAATATTCCCTATGCCTCAACAATAGGCAACCAGGTCTGGCATATGTCCTGTCCTCCTCAATTGTTGAAAGAGCCTCGACGTAGTGGGAGGGTTATTATTCAACCTGATGAATACTATTTGAGTTTAACTGAAACTCTTGTTGTCATACCTGATGATAATATCGAGGATCCATTAACCTTTAAACATGCAATGGATGATGTGGAAAAAGACAAATGGGTCAAAACTATGAACCTTGAAATGGAGTATGTGTACTTCAGTTCAGTTTGGTCTCCACCAAAAAGGTTTGATGCTATGATCAACTCTTATGGTTTTGAACAGAACATTGATGACCCTTGTATCGTTGACATAATCATCAACAGCTCAGTAGCTTTCTTAGTTTTGTATATGGATGATGTCCTACTCATCGGGAATGATGTATGTTATCTAACTGACATTAAAAGGTACGAAATTCAATTGTCTAAGGATCTATCTCCTGAAGACCCCTCAAGAACTTGA

Protein sequence

MAAYVADDVASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKTLVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRNIPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSSVAFLVLYMDDVLLIGNDVCYLTDIKRYEIQLSKDLSPEDPSRT

Homology

[Close]

BLAST of Lag0028756 vs. NCBI nr
Match: KAA0049915.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-33
Identity = 98/262 (37.40%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V ++V  +S R+ D     S   +   + +S P Q L+ PR SGRV+ QP+  YL LT+T
Sbjct: 154 VLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNR-YLGLTET 213

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---------------- 128
            VVIPDD +EDPL++KHAM+DV+KD+WVK+M+LEME +YF+SVW                
Sbjct: 214 QVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSVWELVDLPEGPEGFITQG 273

Query: 129 --------------------SPPKRFDAMINSYGFEHNIDDACIVDIIINSSVAFLVLYM 188
                               S   RFD  I SYGF+ N+D+  +   I    VAFLVLY+
Sbjct: 274 QEQKVCKLNRSIYGLKQASRSWNIRFDIAIKSYGFDQNVDEPYVYKKINKGKVAFLVLYV 333

Query: 189 DDVLLIGNDV---------------------------------CTKFNCLRIYLLKTPQE 202
           DD+LLIGNDV                                    F+  +    KTPQE
Sbjct: 334 DDILLIGNDVGYLTDVKDWLAAQFQMKDLGEAQYVLGIQIIRDRMGFHLSKEQCAKTPQE 393

[Close]

BLAST of Lag0028756 vs. NCBI nr
Match: TYK07654.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-33
Identity = 98/262 (37.40%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V ++V  +S R+ D     S   +   + +S P Q L+ PR SGRV+ QP+  YL LT+T
Sbjct: 11  VLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNR-YLGLTET 70

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---------------- 128
            VVIPDD +EDPL++KHAM+DV+KD+WVK+M+LEME +YF+SVW                
Sbjct: 71  QVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSVWELVDLPEGPEGFITQG 130

Query: 129 --------------------SPPKRFDAMINSYGFEHNIDDACIVDIIINSSVAFLVLYM 188
                               S   RFD  I SYGF+ N+D+  +   I    VAFLVLY+
Sbjct: 131 QKQKVCKLNRSIYGLKQASRSWNIRFDIAIKSYGFDQNVDEPYVYKKINKGKVAFLVLYV 190

Query: 189 DDVLLIGNDV---------------------------------CTKFNCLRIYLLKTPQE 202
           DD+LLIGNDV                                    F+  +    KTPQE
Sbjct: 191 DDILLIGNDVGYLTDVKDWLAAQFQMKDLGEAQYVLGIQIIRDRMGFHLSKEQCAKTPQE 250

[Close]

BLAST of Lag0028756 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 253 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 312

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 313 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 372

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 373 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 432

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 433 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 492

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 493 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 539

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 553 VAFLVLYVDDILLIGNDVGYLTDVKAW 539

[Close]

BLAST of Lag0028756 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 643 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 702

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 703 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 762

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 763 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 822

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 823 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 882

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 883 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 929

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 943 VAFLVLYVDDILLIGNDVGYLTDVKAW 929

[Close]

BLAST of Lag0028756 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 8.6e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 517 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 576

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 577 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 636

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 637 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 696

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 697 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 756

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 757 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 803

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 817 VAFLVLYVDDILLIGNDVGYLTDVKAW 803

[Close]

BLAST of Lag0028756 vs. ExPASy TrEMBL
Match: A0A5A7U8G7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00720 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-34
Identity = 98/262 (37.40%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V ++V  +S R+ D     S   +   + +S P Q L+ PR SGRV+ QP+  YL LT+T
Sbjct: 154 VLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNR-YLGLTET 213

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---------------- 128
            VVIPDD +EDPL++KHAM+DV+KD+WVK+M+LEME +YF+SVW                
Sbjct: 214 QVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSVWELVDLPEGPEGFITQG 273

Query: 129 --------------------SPPKRFDAMINSYGFEHNIDDACIVDIIINSSVAFLVLYM 188
                               S   RFD  I SYGF+ N+D+  +   I    VAFLVLY+
Sbjct: 274 QEQKVCKLNRSIYGLKQASRSWNIRFDIAIKSYGFDQNVDEPYVYKKINKGKVAFLVLYV 333

Query: 189 DDVLLIGNDV---------------------------------CTKFNCLRIYLLKTPQE 202
           DD+LLIGNDV                                    F+  +    KTPQE
Sbjct: 334 DDILLIGNDVGYLTDVKDWLAAQFQMKDLGEAQYVLGIQIIRDRMGFHLSKEQCAKTPQE 393

[Close]

BLAST of Lag0028756 vs. ExPASy TrEMBL
Match: A0A5D3C8S8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00610 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 4.9e-34
Identity = 98/262 (37.40%), Postives = 133/262 (50.76%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V ++V  +S R+ D     S   +   + +S P Q L+ PR SGRV+ QP+  YL LT+T
Sbjct: 11  VLNEVTDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRCSGRVVSQPNR-YLGLTET 70

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---------------- 128
            VVIPDD +EDPL++KHAM+DV+KD+WVK+M+LEME +YF+SVW                
Sbjct: 71  QVVIPDDGVEDPLSYKHAMNDVDKDQWVKSMDLEMESMYFNSVWELVDLPEGPEGFITQG 130

Query: 129 --------------------SPPKRFDAMINSYGFEHNIDDACIVDIIINSSVAFLVLYM 188
                               S   RFD  I SYGF+ N+D+  +   I    VAFLVLY+
Sbjct: 131 QKQKVCKLNRSIYGLKQASRSWNIRFDIAIKSYGFDQNVDEPYVYKKINKGKVAFLVLYV 190

Query: 189 DDVLLIGNDV---------------------------------CTKFNCLRIYLLKTPQE 202
           DD+LLIGNDV                                    F+  +    KTPQE
Sbjct: 191 DDILLIGNDVGYLTDVKDWLAAQFQMKDLGEAQYVLGIQIIRDRMGFHLSKEQCAKTPQE 250

[Close]

BLAST of Lag0028756 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 643 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 702

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 703 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 762

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 763 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 822

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 823 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 882

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 883 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 929

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 943 VAFLVLYVDDILLIGNDVGYLTDVKAW 929

[Close]

BLAST of Lag0028756 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 253 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 312

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 313 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 372

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 373 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 432

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 433 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 492

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 493 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 539

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 553 VAFLVLYVDDILLIGNDVGYLTDVKAW 539

[Close]

BLAST of Lag0028756 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.2e-33
Identity = 114/327 (34.86%), Postives = 162/327 (49.54%), Query Frame = 0


Query: 9   VASDVACKSIRIDDVALQRSLFVDVVMTWKSCPPQLLKEPRRSGRVIIQPDEYYLSLTKT 68
           V S+   +S R+ D     S   +   + +S P Q L+ PRRSGRV+ QP+  YL LT+T
Sbjct: 517 VLSEATDESTRVVDEVGPSSRVDETTTSGQSHPSQSLRMPRRSGRVVSQPNR-YLGLTET 576

Query: 69  LVVIPDDNIEDPLTFKHAMDDVEKDKWVKTMNLEMEYVYFSSVW---SPPKRFDAMINSY 128
            VVIPDD +EDPL++K AM+DV+KD+WVK M+LEME +YF+SVW     P+    +   +
Sbjct: 577 QVVIPDDGVEDPLSYKQAMNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKW 636

Query: 129 GFEHNIDDACIVDIIINSSVAFLVLYMDDVLLIGNDVCTKFNCLRIYLLKTPQELEDMRN 188
            ++   D A  V       VA      +     G D    F+   + +LK+ + L     
Sbjct: 637 IYKRKRDSAGKVQTFKARLVAKGYTQRE-----GVDYEETFS--PVAMLKSIRIL----- 696

Query: 189 IPYASTIGNQVWHMSCPPQLLKEPRRSGRVIIQPDEYYLSLTETLVVIPDDNIEDPLTFK 248
           +  A+    ++W M      L         + QP+ +     E  V   + +I      K
Sbjct: 697 LSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKLNRSI---YGLK 756

Query: 249 HAMDDVEKDKWVKTMNLEMEYVYFSSVWSPPKRFDAMINSYGFEQNIDDPCIVDIIINSS 308
            A                      S  W+   RFD  I SYGF+QN+D+PC+   I    
Sbjct: 757 QA----------------------SRSWN--IRFDTAIKSYGFDQNVDEPCVYKKINKGK 803

Query: 309 VAFLVLYMDDVLLIGNDVCYLTDIKRY 333
           VAFLVLY+DD+LLIGNDV YLTD+K +
Sbjct: 817 VAFLVLYVDDILLIGNDVGYLTDVKAW 803

The following BLAST results are available for this feature:

BLAST of Lag0028756 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049915.1	1.0e-33	37.40	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK07654.1	1.0e-33	37.40	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	8.6e-33	34.86	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	8.6e-33	34.86	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]
KAA0059226.1	8.6e-33	34.86	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0028756 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028756 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8G7	4.9e-34	37.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00720...	[more]
A0A5D3C8S8	4.9e-34	37.40	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G0061...	[more]
A0A5A7TZD0	4.2e-33	34.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	4.2e-33	34.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]
A0A5A7UYE8	4.2e-33	34.86	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Lag0028756 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028756.1	Lag0028756.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding