Lag0028731 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028731
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Retrotransposon gag protein
Location	chr8: 29451715 .. 29455226 (-)
RNA-Seq Expression	Lag0028731
Synteny	Lag0028731

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGCTGTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGCAGAGAAGTAAAAAGTTTTCTCAACCTCGACAGCCGGTGACTGCGAAAGAGATCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATTTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCCAAAAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCCTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACTTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAGAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGGGCTTTTAAAATGTAAATACTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAAACATTTTTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAGGAAGTGCAACAAATATTGAAGCACGACAATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAACAAATGGAAGTTGTGCACCGTTATGAATGTGAGACTATGAGTTGGATGAATAAAAGAAGACTTAATTCCTCCAAATTTGACGTCTTGCTCGCCTCAAGTTCGGTGTTCCACTCACCCTAAGTTCGTTGTTCCCTCTTCCTCAAGTTTGAAGGTTCTTACACTGTACGTTGCTGCGTTGTTCTTTCTCTCAGAGTCCGAAGGTTCTCACGTGCTTCGCTGCAGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAATTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCCACTGCTCCTTTTCGAAGTTCGAAGGCGTTTCTCTCTGCTGCTCCTTCTCGAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCACTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCATTCTCCAACTTCGAAGACGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAAGCGCTTCTCTCCACTGCTCCTTCTCGCAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGTGGTTCTCCTTCTCCAAGTTCAAAGGTTCACCGTTGCTCCTTTTCAAATAGTTGGCGACGGTTGACGGCCTCGTTCCACTCCATCTTCAAACGTTGGCAGTTGACGACGTCTGCTTCGCTTCATCTTCATCTTCAAATGTTGGCAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAGGTTGACGGTTGGCGGCTTCGACCTCGCTTCACTTCAAAGTTGGCGGTTGGTGACTTTCACTTCATCTTCAAAAGTTGACGGTTGACAGTCTCGCTTCTTCTTCAAAGTTGACAGTTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGACGGTTGACAATCTCGCTTCTTCTTCAAAGTTGACGGTTGACAACTTCACTTTAAAGTTGGCGGTTGGCGACTTTCACTTAATCTTCAAAAGTTGACAGTTGGCGGTCTCGCTTCTTCTTCAAAGTTGACAGTTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGACGGTTGGCAATCTCGCTTCTTCTTCAAAAGTTGATGGTTGACAGTCTCGCTTCTTCTTCAAAAATTGACGGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTACAAAGATGAACAACTTTAGTGTTGCCTTTACCTTGAAAGTGTCTAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAATGCTTGATATCAAACTACAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGAAAGAAAGACAATAAAGGTGTTGTTAAAAAAATGGTGACCACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACGGGTGGTGAAGTCACTGCAATTGAATCTAATGACGACCGTTGTAGGCGAGTCTGGTGATCACCCCTTCAAGATACTACAGTCATCAAAGTGACTGATCTAGACAGGTGATGAAGTCACTGCAAGTAAATCTAATGACGACCATTGTAGGCGAGTCGAGTCTGGTGACCACCCCTATAGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGTGAATCTGGTGACTACCCCTGCAGGCTACTCAAATCACCGAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCAAATCTGGTGACTACCCTTGCAGCTACTCAGATCACCCAATAAAATGAGGACTAGTCTAGCAGGAATGCATCACTAAAGGCGAATCTGGTGACTACCCCTGCAGGCTACTCAAATCACCAAATAAAATGGGGATTGGTCTAGCAGGAGTACATCACTGTAGGCAAATCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATAGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGGATTTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGTAGGAGTGCATCACTGTAGGCAAATATGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGTATCACTGTAGGCAAATCTGGTGACTACCCCTGCAGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGATGACCACCATTGCAGGCTACTCAAGAAGGATTTGACTTTGATTTGCAATTTTCTCTTGCAGGTTAAGGTTAGTGCATGAACAAGGGGTGTCCACTCCTTGA

mRNA sequence

ATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGCTGTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGCAGAGAAGTAAAAAGTTTTCTCAACCTCGACAGCCGGTGACTGCGAAAGAGATCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATTTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCCAAAAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCCTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACTTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAGAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGGGCTTTTAAAATGTAAATACTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGAGTCCGAAGGTTCTCACGTGCTTCGCTGCAGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAATTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCCACTGCTCCTTTTCGAAGTTCGAAGGCGTTTCTCTCTGCTGCTCCTTCTCGAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCACTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCATTCTCCAACTTCGAAGACGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAAGCGCTTCTCTCCACTGCTCCTTCTCGCAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGTGGTTCTCCTTCTCCAAGTTCAAAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAGGTTGACGGTTGGCGGCTTCGACCTCGCTTCACTTCAAAGTTGGCGGTTGGAAACTACAGTCATCAAAGTGACTGGTCTAGACGGGTGGTGAAGTCACTGCAATTGAATCTAATGACGACCGTTGTAGGCGAGTCTGGCGAGTCGAGTCTGGTGACCACCCCTATAGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCTACTCAAATCACCAAATAAAATGGGGATTGGTCTAGCAGGAGTACATCACTGTAGGCAAATCTGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGTATCACTGTAGGCAAATCTGGTTAAGGTTAGTGCATGAACAAGGGGTGTCCACTCCTTGA

Coding sequence (CDS)

ATGGAGAAAGTCGATGATCCCAAGTATTGCAAGTATCATCGAGCTGTTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAACATCAAAGAAAGAAGGATCTTAAGAAACTTCAACCCAAGAGGCAGAGAAGTAAAAAGTTTTCTCAACCTCGACAGCCGGTGACTGCGAAAGAGATCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAATTTTGCAACTTCCTACTACATCGACGTAGAAGAAGTTGACAATTCCAAAAAGGGTGAACAAAGGACATCCGTCTTTGATCGCATCAAGCCTTCAACTACTCCTCCTTCGGTATTCCAAAGAATGAGTATGGTCGCGACAAAAGAAGAAAATCAATGTTCGACGTCCACCTTCACTCGACTTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAGAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGATAAGAAGCTTCAAAGTAGCGTCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAAGGGCTTTTAAAATGTAAATACTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGAGTCCGAAGGTTCTCACGTGCTTCGCTGCAGTTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCTGCGCAATTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCCACTGCTCCTTTTCGAAGTTCGAAGGCGTTTCTCTCTGCTGCTCCTTCTCGAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCACTTCTCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCATTCTCCAACTTCGAAGACGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAAGCGCTTCTCTCCACTGCTCCTTCTCGCAGTTCAAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCCTTTTGAAGGTTCGCCACTGTGGTTCTCCTTCTCCAAGTTCAAAGTTGACGGCGTCCGCTTCGCTTCATCTTCAAAGGTTGACGGTTGGCGGCTTCGACCTCGCTTCACTTCAAAGTTGGCGGTTGGAAACTACAGTCATCAAAGTGACTGGTCTAGACGGGTGGTGAAGTCACTGCAATTGAATCTAATGACGACCGTTGTAGGCGAGTCTGGCGAGTCGAGTCTGGTGACCACCCCTATAGGCTACTCAGATCACCCAATAAATATAGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCTACTCAAATCACCAAATAAAATGGGGATTGGTCTAGCAGGAGTACATCACTGTAGGCAAATCTGGCTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGTATCACTGTAGGCAAATCTGGTTAAGGTTAGTGCATGAACAAGGGGTGTCCACTCCTTGA

Protein sequence

MEKVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQRKKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENFATSYYIDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGSDQDHDEDKGLLKCKYSLSQEPKLHDAPSPHELKRVRRFSRASLQLQFLPPSSKVLMRFAAQFLPPSSKVPSRASLAPSPSSKALLSTAPFRSSKAFLSAAPSRSSKALLSTAPSPSSKALLSTAPSPSSKALLSTTHSPTSKTLLSTTPSPSSKALLSTAPSRSSKALLSTAPSPSSKVLLSTPPFEGSPLWFSFSKFKVDGVRFASSSKVDGWRLRPRFTSKLAVGNYSHQSDWSRRVVKSLQLNLMTTVVGESGESSLVTTPIGYSDHPINIGTGLAGVHHCRLLKSPNKMGIGLAGVHHCRQIWLLRSPNKMGTGLAGVYHCRQIWLRLVHEQGVSTP

Homology

[Close]

BLAST of Lag0028731 vs. NCBI nr
Match: KAA0050736.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-57
Identity = 149/359 (41.50%), Postives = 194/359 (54.04%), Query Frame = 0


Query: 1   MEKVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNL--------- 60
           +EKVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KI+LD+DEVAQ+N          
Sbjct: 162 VEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVNMTSSV 221

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 222 SSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHKKERRT 281

Query: 121 ---------------ATIKEKSKHQRKKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTF 180
                            I  K K +R K + K +P +++ +KF QPR+ +T  E F ++F
Sbjct: 282 SSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEFFPRSF 341

Query: 181 HKKEKENF-------------ATSYYIDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQR 240
            +   E                 + Y   EEVDNS + +QRTSVFDRIKP TT  SVFQR
Sbjct: 342 LEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 401

Query: 241 MSMVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEV 263
           +SM   +EENQC  ST+TR SAF+RLS+S SK+ +PSTS FDRLK+T+DQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

[Close]

BLAST of Lag0028731 vs. NCBI nr
Match: KAA0056121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.9 bits (585), Expect = 5.6e-56
Identity = 139/273 (50.92%), Postives = 179/273 (65.57%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KIELD+DEVAQ+N A I+  S    
Sbjct: 471 KVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTS---- 530

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENF-------------ATSYY 122
                   P + + + F Q R+ +T  E   ++F + + E                 + Y
Sbjct: 531 -------NPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNY 590

Query: 123 IDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRL 182
              +EV+NS +  QRTSVFDRIKPSTT  SVFQR+S+   +EENQC T  +TR S  +RL
Sbjct: 591 GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRL 650

Query: 183 SVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSV 242
           S+ST K+ +PSTS FDRLK+T+DQ +R+M + + K F E N+D K+ S VPSRMKRK  V
Sbjct: 651 SISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFV 710

Query: 243 LINTEGSLKVKPNLIILTNPTSQGSDQDHDEDK 263
            INTEGSL VKP  II TNPT++G +Q   E+K
Sbjct: 711 DINTEGSLTVKPRFIIFTNPTNEGDEQILVENK 731

[Close]

BLAST of Lag0028731 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 8.0e-55
Identity = 151/357 (42.30%), Postives = 189/357 (52.94%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSN------------ 62
           KVDDP YCKYHR + H VE+CFVLK+LILKL +E KIELD+DEVAQ+N            
Sbjct: 256 KVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQTNHVAVNMTSSVPP 315

Query: 63  ------------------------------------------------------------ 122
                                                                       
Sbjct: 316 SILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSS 375

Query: 123 ------------LATIKEKSKHQRKKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTF-- 182
                          I  K K +R K + K +P + + + F QPRQ +T  E F ++F  
Sbjct: 376 VQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITLAEFFPRSFLE 435

Query: 183 -HKKEKENFATSY----------YIDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMS 242
            H KE       +          Y   EEVDNS + +QRTSVFDRIKP TT  SVFQR+S
Sbjct: 436 DHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLS 495

Query: 243 MVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKL 263
           +   +EENQC TST TR SAF+ LS+STSK+ +PSTS FDRLK+ +DQ +R+M +L+VK 
Sbjct: 496 ITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKVKP 555

[Close]

BLAST of Lag0028731 vs. NCBI nr
Match: KAA0065608.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.1 bits (575), Expect = 8.0e-55
Identity = 136/260 (52.31%), Postives = 170/260 (65.38%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + H +E+CFVLK+LILKLA + KIELD+DEVAQ+N A +   S    
Sbjct: 24  KVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKIELDIDEVAQTNHAAVNMTSSVSP 83

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENFATSYYIDVEEVDNSKKGE 122
              L          + F +       +     T    E +N   SY    EEVDNS + +
Sbjct: 84  SILL--------YDQSFLEDHPEEILEVTACHTTSIVEVDNSYDSY----EEVDNSNEIK 143

Query: 123 QRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTS 182
           QRT VFDRIKP TT  SVFQR+SM   +EE QC TST+TR S F+RLS+STSK+ +PSTS
Sbjct: 144 QRTFVFDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSISTSKKDRPSTS 203

Query: 183 VFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSVLINTEGSLKVKPN 242
            FDRLK+T+DQ +++M +L+ K F E N D K+ S VPSR KRK SV INTEGSL VKP 
Sbjct: 204 AFDRLKMTNDQQQKEMKSLKAKPFHEKNGDDKIHSRVPSRKKRKLSVDINTEGSLTVKPR 263

Query: 243 LIILTNPTSQGSDQDHDEDK 263
            II TNP ++G ++  DE+K
Sbjct: 264 FIIFTNPINEGDEKILDENK 271

[Close]

BLAST of Lag0028731 vs. NCBI nr
Match: KAA0065984.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 225.7 bits (574), Expect = 1.0e-54
Identity = 133/273 (48.72%), Postives = 171/273 (62.64%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KI+LD+DE                 
Sbjct: 184 KVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE----------------- 243

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENF-------------ATSYY 122
                   P + + + F QPR+ +T  E   ++F +   E                 + Y
Sbjct: 244 --------PIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNY 303

Query: 123 IDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRL 182
              EEVDNS + +QRTSVFDRIKP TT   VFQR+SM   +EENQC TST+TR SAF+RL
Sbjct: 304 DSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRL 363

Query: 183 SVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSV 242
           S+STSK+ +PSTS FDRLK+ +DQ +R+M +L+ K F E N+D K+ S +PS   RK SV
Sbjct: 364 SISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSV 423

Query: 243 LINTEGSLKVKPNLIILTNPTSQGSDQDHDEDK 263
            IN EGSL VKP  II TNP ++G ++  DE+K
Sbjct: 424 DINIEGSLTVKPRFIIFTNPINEGDEKILDENK 428

[Close]

BLAST of Lag0028731 vs. ExPASy TrEMBL
Match: A0A5A7U974 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00280 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 1.9e-57
Identity = 149/359 (41.50%), Postives = 194/359 (54.04%), Query Frame = 0


Query: 1   MEKVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNL--------- 60
           +EKVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KI+LD+DEVAQ+N          
Sbjct: 162 VEKVDDPNYCKYHRIISHPVEKCFVLKELILKLARENKIKLDIDEVAQTNYVAVNMTSSV 221

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 222 SSSILLYDQRESLIQFGTFEPILVRFQQKIMTSNFQNKEEPIEDEGEEWIVVAHKKERRT 281

Query: 121 ---------------ATIKEKSKHQRKKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTF 180
                            I  K K +R K + K +P +++ +KF QPR+ +T  E F ++F
Sbjct: 282 SSVQTKSHFHQKHSKGNISHKKKGRRNKKMWKPKPIKEKDEKFLQPRRSITLAEFFPRSF 341

Query: 181 HKKEKENF-------------ATSYYIDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQR 240
            +   E                 + Y   EEVDNS + +QRTSVFDRIKP TT  SVFQR
Sbjct: 342 LEDHSEEILEVTACHTTSIVEVDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQR 401

Query: 241 MSMVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEV 263
           +SM   +EENQC  ST+TR SAF+RLS+S SK+ +PSTS FDRLK+T+DQ +R+M +L+ 
Sbjct: 402 LSMATKEEENQCPMSTYTRTSAFKRLSISRSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 461

[Close]

BLAST of Lag0028731 vs. ExPASy TrEMBL
Match: A0A5A7URH1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17350G00010 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.7e-56
Identity = 139/273 (50.92%), Postives = 179/273 (65.57%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KIELD+DEVAQ+N A I+  S    
Sbjct: 471 KVDDPNYCKYHRVISHPVEKCFVLKELILKLAREKKIELDIDEVAQTNHA-IEMTS---- 530

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENF-------------ATSYY 122
                   P + + + F Q R+ +T  E   ++F + + E                 + Y
Sbjct: 531 -------NPIKGKDEDFLQLRRSITLAEFLPRSFLEDDPEEILEVTACHAASIVEVDNNY 590

Query: 123 IDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRL 182
              +EV+NS +  QRTSVFDRIKPSTT  SVFQR+S+   +EENQC T  +TR S  +RL
Sbjct: 591 GSSKEVNNSNEINQRTSVFDRIKPSTTRSSVFQRLSVATKEEENQCPTFIYTRTSTSKRL 650

Query: 183 SVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSV 242
           S+ST K+ +PSTS FDRLK+T+DQ +R+M + + K F E N+D K+ S VPSRMKRK  V
Sbjct: 651 SISTLKKDRPSTSSFDRLKMTNDQQQREMKSSKAKPFREENDDDKIHSCVPSRMKRKLFV 710

Query: 243 LINTEGSLKVKPNLIILTNPTSQGSDQDHDEDK 263
            INTEGSL VKP  II TNPT++G +Q   E+K
Sbjct: 711 DINTEGSLTVKPRFIIFTNPTNEGDEQILVENK 731

[Close]

BLAST of Lag0028731 vs. ExPASy TrEMBL
Match: A0A5D3CA53 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00600 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.9e-55
Identity = 136/260 (52.31%), Postives = 170/260 (65.38%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + H +E+CFVLK+LILKLA + KIELD+DEVAQ+N A +   S    
Sbjct: 24  KVDDPNYCKYHRVISHLIEKCFVLKELILKLAHKNKIELDIDEVAQTNHAAVNMTSSVSP 83

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENFATSYYIDVEEVDNSKKGE 122
              L          + F +       +     T    E +N   SY    EEVDNS + +
Sbjct: 84  SILL--------YDQSFLEDHPEEILEVTACHTTSIVEVDNSYDSY----EEVDNSNEIK 143

Query: 123 QRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTS 182
           QRT VFDRIKP TT  SVFQR+SM   +EE QC TST+TR S F+RLS+STSK+ +PSTS
Sbjct: 144 QRTFVFDRIKPLTTRSSVFQRLSMAMKEEEKQCPTSTYTRTSTFKRLSISTSKKDRPSTS 203

Query: 183 VFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSVLINTEGSLKVKPN 242
            FDRLK+T+DQ +++M +L+ K F E N D K+ S VPSR KRK SV INTEGSL VKP 
Sbjct: 204 AFDRLKMTNDQQQKEMKSLKAKPFHEKNGDDKIHSRVPSRKKRKLSVDINTEGSLTVKPR 263

Query: 243 LIILTNPTSQGSDQDHDEDK 263
            II TNP ++G ++  DE+K
Sbjct: 264 FIIFTNPINEGDEKILDENK 271

[Close]

BLAST of Lag0028731 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 3.9e-55
Identity = 151/357 (42.30%), Postives = 189/357 (52.94%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSN------------ 62
           KVDDP YCKYHR + H VE+CFVLK+LILKL +E KIELD+DEVAQ+N            
Sbjct: 256 KVDDPNYCKYHRVISHHVEKCFVLKELILKLTRENKIELDIDEVAQTNHVAVNMTSSVPP 315

Query: 63  ------------------------------------------------------------ 122
                                                                       
Sbjct: 316 SILLYDQRESLIQFGTFEPILVRFQQKVMTSNSQNKEEPIEDEGEEWIVVAHKKERQTSS 375

Query: 123 ------------LATIKEKSKHQRKKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTF-- 182
                          I  K K +R K + K +P + + + F QPRQ +T  E F ++F  
Sbjct: 376 VQTNSHFHQKHSKGNISHKKKGRRNKKMWKSKPIKGKDEDFLQPRQSITLAEFFPRSFLE 435

Query: 183 -HKKEKENFATSY----------YIDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMS 242
            H KE       +          Y   EEVDNS + +QRTSVFDRIKP TT  SVFQR+S
Sbjct: 436 DHPKEILEVTACHTTSIVEFDNNYDSYEEVDNSNEIKQRTSVFDRIKPLTTRSSVFQRLS 495

Query: 243 MVATKEENQCSTSTFTRLSAFQRLSVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKL 263
           +   +EENQC TST TR SAF+ LS+STSK+ +PSTS FDRLK+ +DQ +R+M +L+VK 
Sbjct: 496 ITTKEEENQCPTSTCTRTSAFKSLSISTSKKDRPSTSAFDRLKMINDQQQREMKSLKVKP 555

[Close]

BLAST of Lag0028731 vs. ExPASy TrEMBL
Match: A0A5A7VFA5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00130 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.1e-55
Identity = 133/273 (48.72%), Postives = 171/273 (62.64%), Query Frame = 0


Query: 3   KVDDPKYCKYHRAVGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATIKEKSKHQR 62
           KVDDP YCKYHR + HPVE+CFVLK+LILKLA+E KI+LD+DE                 
Sbjct: 184 KVDDPNYCKYHRVISHPVEKCFVLKELILKLARENKIQLDIDE----------------- 243

Query: 63  KKDLKKLQPKRQRSKKFSQPRQPVTAKEIFSKTFHKKEKENF-------------ATSYY 122
                   P + + + F QPR+ +T  E   ++F +   E                 + Y
Sbjct: 244 --------PIKGKDEDFLQPRRSITLAEFLPRSFFEDHPEEVIEVTACHTTSIVEVDNNY 303

Query: 123 IDVEEVDNSKKGEQRTSVFDRIKPSTTPPSVFQRMSMVATKEENQCSTSTFTRLSAFQRL 182
              EEVDNS + +QRTSVFDRIKP TT   VFQR+SM   +EENQC TST+TR SAF+RL
Sbjct: 304 DSYEEVDNSNEIKQRTSVFDRIKPLTTRSLVFQRLSMATKEEENQCPTSTYTRTSAFKRL 363

Query: 183 SVSTSKRSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSVPSRMKRKFSV 242
           S+STSK+ +PSTS FDRLK+ +DQ +R+M +L+ K F E N+D K+ S +PS   RK SV
Sbjct: 364 SISTSKKHRPSTSAFDRLKMKNDQQQREMKSLKAKPFHEENDDDKIHSHIPS---RKLSV 423

Query: 243 LINTEGSLKVKPNLIILTNPTSQGSDQDHDEDK 263
            IN EGSL VKP  II TNP ++G ++  DE+K
Sbjct: 424 DINIEGSLTVKPRFIIFTNPINEGDEKILDENK 428

The following BLAST results are available for this feature:

BLAST of Lag0028731 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050736.1	3.8e-57	41.50	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ95700.1 retrotranspos...	[more]
KAA0056121.1	5.6e-56	50.92	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0040811.1	8.0e-55	42.30	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0065608.1	8.0e-55	52.31	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK07179.1 retrotranspos...	[more]
KAA0065984.1	1.0e-54	48.72	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK28929.1 ty3-gyp...	[more]

BLAST of Lag0028731 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0028731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U974	1.9e-57	41.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7URH1	2.7e-56	50.92	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CA53	3.9e-55	52.31	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TGM1	3.9e-55	42.30	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7VFA5	5.1e-55	48.72	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0028731 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 321..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..338
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 361..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..79
IPR028565	Mu homology domain	PROSITE	PS51072	MHD	coord: 224..486 score: 8.816231

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028731.1	Lag0028731.1	mRNA