Lag0028718 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028718
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr8: 29203210 .. 29204044 (+)
RNA-Seq ExpressionLag0028718
SyntenyLag0028718
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGGAAAAAGTCGGAGGCTCGGGCAAAGTCTGAGGCCGAGCAGGGCCAAAAGGGGCAGGAGCTATTCCAAACGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTTTGTGCCAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTTCGTTTAAAGAATTGGCCCGAGCGTTTGTTACGCAATTCCTCGGGGCTCGGAGCCCGACATAAGTCTCAGATCAATTTGCTAATAGTAAAGCAGGGGCCCGAGAAAGCTTGAATGATTCTATTAACAGATTTAATAACGAGGTTTTGCAGGTATAAGGCTATGGCGATGGATTTGCCTTGACTGCTGTGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGATCGGTGAGAGCCATCCACAGACATACGCCGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAGAGAGGTTGAAGCCGACAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACAGGGAGCCTCGAGGTCGTGCAGAACCAAAAGCCAGGTTTGATAGGTGTACACCACTAACAACTCCACTTGAATATGCCCTGACCACAATACAAGATACAAACCTAATGAAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCGAAACAAGTACTGCATGTTCCACGGAGACCACGATCACACAACTCGAGAATGCATACAGTTGAGGGACAAGATAGAAGCCCTAATCCGAGAGGGTTACCACAAGGAGTTTGTGGGGAATGACAGAAGCTAG

mRNA sequence

ATGACAGGAAAAAGTCGGAGGCTCGGGCAAAGTCTGAGGCCGAGCAGGGCCAAAAGGGGCAGGAGCTATTCCAAACGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTTTGTGCCAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTCTGCAGGATGAAAGACTGCTCAACTCGATCGGTGAGAGCCATCCACAGACATACGCCGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAGAGAGGTTGAAGCCGACAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACAGGGAGCCTCGAGGTCGTGCAGAACCAAAAGCCAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCGAAACAAGTACTGCATGTTCCACGGAGACCACGATCACACAACTCGAGAATGCATACAGTTGAGGGACAAGATAGAAGCCCTAATCCGAGAGGGTTACCACAAGGAGTTTGTGGGGAATGACAGAAGCTAG

Coding sequence (CDS)

ATGACAGGAAAAAGTCGGAGGCTCGGGCAAAGTCTGAGGCCGAGCAGGGCCAAAAGGGGCAGGAGCTATTCCAAACGGCTAAAAGACGAAGCGACAAGGTGCCGAGCCTTTGTGCCAACACTCACAGGTTTGGCAAGGCAATGGTTTAGTAAGATCCCATGGAAGTCAATCGGTCTGCAGGATGAAAGACTGCTCAACTCGATCGGTGAGAGCCATCCACAGACATACGCCGAATTCATGACCCGAGCACAAAGGTACATAAGCGCCGAGGAACTGCTGAGGTCCAAACAAGAAGAGAGAGAGGTTGAAGCCGACAAGAGCAGTCCTCGGCCAATGGCCGAGGCCGACCAGAGACAGGGAGCCTCGAGGTCGTGCAGAACCAAAAGCCAGTGCCCAGAAAAATTGAGGTCGGACCCAGACAGGAGGAATCGAAACAAGTACTGCATGTTCCACGGAGACCACGATCACACAACTCGAGAATGCATACAGTTGAGGGACAAGATAGAAGCCCTAATCCGAGAGGGTTACCACAAGGAGTTTGTGGGGAATGACAGAAGCTAG

Protein sequence

MTGKSRRLGQSLRPSRAKRGRSYSKRLKDEATRCRAFVPTLTGLARQWFSKIPWKSIGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEADKSSPRPMAEADQRQGASRSCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQLRDKIEALIREGYHKEFVGNDRS
Homology
BLAST of Lag0028718 vs. NCBI nr
Match: XP_022159079.1 (uncharacterized protein LOC111025521 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 70/244 (28.69%), Postives = 105/244 (43.03%), Query Frame = 0

Query: 30  EATRCRAFVPTLTGLARQWFSKIPWKS--------------------------------- 89
           +A +CRAF   LTG AR W+ ++P +                                  
Sbjct: 28  DAIKCRAFQIALTGSARLWYRRLPARKTATHLATIRQKEGETLKEYVTRFQEEQLKVAHC 87

Query: 90  ----------IGLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSK--QEEREVE- 149
                      GL DE L   +GE  P T+AE + +A++ I  +ELLR+K  + E++++ 
Sbjct: 88  SDDSAMCYFLTGLADETLTVKLGEEAPATFAEVLQKAKKVIDGQELLRTKTGRPEKKIDQ 147

Query: 150 --------------ADKSSPRPMAEADQRQGASRSCRTKS-------------------- 187
                          DK S    ++AD R+  S   R++                     
Sbjct: 148 GRAGKDKGKADSKSKDKGSSSSSSQADYRRSDSSRNRSRPYERYTPTTIPSSEILTNIEE 207

BLAST of Lag0028718 vs. NCBI nr
Match: MQL75419.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 63/200 (31.50%), Postives = 91/200 (45.50%), Query Frame = 0

Query: 30  EATRCRAFVPTLTGLARQWFSKIPWKSI--------------------GLQDERLLNSIG 89
           +A +CRAF  TL   AR WF  +P  SI                    G +D  L  ++G
Sbjct: 434 DAAKCRAFPATLKETARAWFETLPAGSISSFRQLKKSFQDNFLGGRREGTRDGFLQRTLG 493

Query: 90  ESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEADKSSP-------------------- 149
              P T+AE ++ AQR+ + EE L + + E+  ++DK  P                    
Sbjct: 494 VQQPATFAELISIAQRHAACEESLAAGRAEQGEQSDKKRPSDNGSDRDRKKGRRNGDSPR 553

Query: 150 --------RPMAEADQRQGASRSCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTREC 182
                    P+  A ++  A        + P+++RSDP R ++NKYC FH DH H T EC
Sbjct: 554 RPRPFTDYTPLTVAPEQILAEIKNEAYVRWPQRMRSDPQRCDQNKYCRFHRDHGHDTSEC 613

BLAST of Lag0028718 vs. NCBI nr
Match: XP_022147771.1 (uncharacterized protein LOC111016626 [Momordica charantia])

HSP 1 Score: 90.9 bits (224), Expect = 1.3e-14
Identity = 54/143 (37.76%), Postives = 81/143 (56.64%), Query Frame = 0

Query: 58  GLQDERLLNSIGESHPQTYAEFMTRAQRYISAEELLRSKQEEREVEAD------------ 117
           GL DE L+  +GE  P T+AE + +A++ I  +ELL++K    E + D            
Sbjct: 7   GLADETLIVKLGEEAPATFAEVLQKAKKVIDGQELLQTKTGRPEKKIDQGRTGMDKGKAD 66

Query: 118 -KSSPRPMAEADQRQGASR-SCRTKSQCPEKLRSDPDRRNRNKYCMFHGDHDHTTRECIQ 177
            KS  +  + +  R    R   ++  + PEKLR D ++RN++KYC FH DH H T  C +
Sbjct: 67  SKSKDKGPSSSSSRADYRRLGWKSSFKRPEKLRGDLEKRNKDKYCRFHRDHGHNTSNCWE 126

Query: 178 LRDKIEALIREGYHKEFVGNDRS 187
           L+ +IE LI++GY K+FVG  RS
Sbjct: 127 LKRQIEDLIQDGYFKKFVGKPRS 149

BLAST of Lag0028718 vs. NCBI nr
Match: XP_022150760.1 (uncharacterized protein LOC111018823 [Momordica charantia])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-14
Identity = 66/212 (31.13%), Postives = 102/212 (48.11%), Query Frame = 0

Query: 30  EATRCRAFVPTLTGLARQWF-------------SKIPWKSIGLQDERLLNSIGESHPQTY 89
           +A +CRAF   LTG AR WF             S + +   GL DE L   +G+  P T+
Sbjct: 97  DAIKCRAFQIALTGSARLWFQEDQLKVAQSSDDSAMCYFLTGLADEALTVKLGKEAPATF 156

Query: 90  AEFMTRAQRYISAEELLRSK--QEEREVEADKSSPRPMAE-------------ADQRQGA 149
           AE + +A++ I  +ELLR+K  + ER ++  +S     A+             A+ R+  
Sbjct: 157 AEVLQKAKKVIDGQELLRTKTGRPERGIDRGRSGKDEKADLKSKDKGSFSSGRAEFRRAV 216

Query: 150 SRSCRTKS---------------------------QCPEKLRSDPDRRNRNKYCMFHGDH 187
           +   R++                            + PEKLR  P+RRN++KYC FH +H
Sbjct: 217 NGPTRSRPYERFTPTTIPISEILTNIEESGMEKLLKRPEKLRGAPERRNKDKYCRFHREH 276

BLAST of Lag0028718 vs. NCBI nr
Match: XP_022149377.1 (uncharacterized protein LOC111017807 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-14
Identity = 73/267 (27.34%), Postives = 108/267 (40.45%), Query Frame = 0

Query: 30  EATRCRAFVPTLTGLARQWFSKIPWKSI-------------------------------- 89
           +A +CRAF   LTG AR W+ ++P +SI                                
Sbjct: 54  DAIKCRAFQIALTGXARLWYRRLPARSISTYSQLRKEFISQFXSRHYDRKTATHLATIRQ 113

Query: 90  ----------------------------------GLQDERLLNSIGESHPQTYAEFMTRA 149
                                             GL DE L   +GE  P T+AE + +A
Sbjct: 114 KEXETLREYVTRFQEEQLKVVHCSDDSAMCYFLTGLADETLTVKLGEEAPATFAEVLQKA 173

Query: 150 QRYISAEELLRSK--------------QEEREVEA---DKSSPRPMAEADQRQGASRSCR 187
           ++ I  +ELLR+K              QE+R+ ++   DK S    + A+ R+  S   R
Sbjct: 174 KKVIDGQELLRTKTGRPEKQIDQKKLIQEKRKTDSKSRDKGSSSSASRAEHRRLESGPSR 233

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159079.11.5e-1528.69uncharacterized protein LOC111025521 [Momordica charantia][more]
MQL75419.11.3e-1431.50hypothetical protein [Colocasia esculenta][more]
XP_022147771.11.3e-1437.76uncharacterized protein LOC111016626 [Momordica charantia][more]
XP_022150760.11.6e-1431.13uncharacterized protein LOC111018823 [Momordica charantia][more]
XP_022149377.12.1e-1427.34uncharacterized protein LOC111017807 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 154..174
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..145

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028718.1Lag0028718.1mRNA