Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGACTATTCTATGGACTCCATCTCCATCTCTCACCTTCTTTTTGCCGACGACATCCTCCTTTTTGTTCAAGATGATGATGAGGTGCTAGACACTTTTTTCAAAATTATTAAAGCTTTTGAACAAACTTCAGGCCCCAATATAAATTTCATGAAGTCTTCCATTTCGGGAGTCAATGTTTCTGAAGATAGAGCTGCCTGGATTGCTTCCTGTTGGGGTTGTCCTCCCTCTAGCCTTCCTATCTACTACTTGGGCACTCCCCTTGGAGATAAACCTGCAAGTGCCTCTTTTTGGTCTCCGATTGTTGAGAAAATTCAGCAAAAGCTTGAGAATTGGCACTTTTCTTACATCTCGAAGGGTGGCTGTCTAACCCTCATTCAAGCTACTCTTAGTAGTACTCCCTTGTACATGTTGTCGGTTTTCAAAGCCCCTCAGTCTATTTGCAAGCAGGTGGATAAGCTTATTAGAAACTTTCTCTGGAATGGCACTAGCTCTGGTCAAAATCTCCCTTTGCTTGGCTGGGATGTAGTGATTGCTCCAAAGGTCTTGGGGGGTTTGGGTTTTTTCAAAACAAAAGTTTCAAATCATGCCCTTCAAATCAAATAGCTGTGGAGGTTCTATCAGGAAGATCAACCTTCATGGAAGCATCTTATTACCGTCAAGTATAAATCTTCCCAAGTGAGTGCCCTCCCTATCCAGTCTCGTTTCTCCAGTTCAAGGGCCCCTTGGATTTCTATTGTGAAACTTGCTCCCCATTTTGAGCAATTTGCAAAGTGGGACCTCAAAGATGGAAATAAATTTTTTTTTTGGAAAGATTCTTGGTTAGACTATGGCCCGCTAAATCAGACTCTTGCTCGCTTCTACGCGCTCTCCACTAGACAAGATTTGAAAATCTCTGAGGCTTGGGTGCCCTCTTCTTCTTCTTGA
mRNA sequence
ATGCAAGACTATTCTATGGACTCCATCTCCATCTCTCACCTTCTTTTTGCCGACGACATCCTCCTTTTTGTTCAAGATGATGATGAGGTGCTAGACACTTTTTTCAAAATTATTAAAGCTTTTGAACAAACTTCAGGCCCCAATATAAATTTCATGAAGTCTTCCATTTCGGGAGTCAATGTTTCTGAAGATAGAGCTGCCTGGATTGCTTCCTGTTGGGGTTGTCCTCCCTCTAGCCTTCCTATCTACTACTTGGGCACTCCCCTTGGAGATAAACCTGCAAGTGCCTCTTTTTGGTCTCCGATTGTTGAGAAAATTCAGCAAAAGCTTGAGAATTGGCACTTTTCTTACATCTCGAAGGGTGGCTGTCTAACCCTCATTCAAGCTACTCTTAGTAGTACTCCCTTGTACATGTTGTCGGTTTTCAAAGCCCCTCAGTCTATTTGCAAGCAGGTGGATAAGCTTATTAGAAACTTTCTCTGGAATGGCACTAGCTCTGGTCAAAATCTCCCTTTGCTTGGCTGGGATGTAGTGATTGCTCCAAAGGAAGATCAACCTTCATGGAAGCATCTTATTACCGTCAAGTATAAATCTTCCCAAGTGAGTGCCCTCCCTATCCAGTCTCGTTTCTCCAGTTCAAGGGCCCCTTGGATTTCTATTGTGAAACTTGCTCCCCATTTTGAGCAATTTGCAAAGTGGGACCTCAAAGATGGAAATAAATTTTTTTTTTGGAAAGATTCTTGGTTAGACTATGGCCCGCTAAATCAGACTCTTGCTCGCTTCTACGCGCTCTCCACTAGACAAGATTTGAAAATCTCTGAGGCTTGGGTGCCCTCTTCTTCTTCTTGA
Coding sequence (CDS)
ATGCAAGACTATTCTATGGACTCCATCTCCATCTCTCACCTTCTTTTTGCCGACGACATCCTCCTTTTTGTTCAAGATGATGATGAGGTGCTAGACACTTTTTTCAAAATTATTAAAGCTTTTGAACAAACTTCAGGCCCCAATATAAATTTCATGAAGTCTTCCATTTCGGGAGTCAATGTTTCTGAAGATAGAGCTGCCTGGATTGCTTCCTGTTGGGGTTGTCCTCCCTCTAGCCTTCCTATCTACTACTTGGGCACTCCCCTTGGAGATAAACCTGCAAGTGCCTCTTTTTGGTCTCCGATTGTTGAGAAAATTCAGCAAAAGCTTGAGAATTGGCACTTTTCTTACATCTCGAAGGGTGGCTGTCTAACCCTCATTCAAGCTACTCTTAGTAGTACTCCCTTGTACATGTTGTCGGTTTTCAAAGCCCCTCAGTCTATTTGCAAGCAGGTGGATAAGCTTATTAGAAACTTTCTCTGGAATGGCACTAGCTCTGGTCAAAATCTCCCTTTGCTTGGCTGGGATGTAGTGATTGCTCCAAAGGAAGATCAACCTTCATGGAAGCATCTTATTACCGTCAAGTATAAATCTTCCCAAGTGAGTGCCCTCCCTATCCAGTCTCGTTTCTCCAGTTCAAGGGCCCCTTGGATTTCTATTGTGAAACTTGCTCCCCATTTTGAGCAATTTGCAAAGTGGGACCTCAAAGATGGAAATAAATTTTTTTTTTGGAAAGATTCTTGGTTAGACTATGGCCCGCTAAATCAGACTCTTGCTCGCTTCTACGCGCTCTCCACTAGACAAGATTTGAAAATCTCTGAGGCTTGGGTGCCCTCTTCTTCTTCTTGA
Protein sequence
MQDYSMDSISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAAWIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLIQATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPKEDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISIVKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPSSSS
Homology
BLAST of Lag0028684 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 250.0 bits (637), Expect = 2.5e-62
Identity = 118/301 (39.20%), Postives = 175/301 (58.14%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D D+ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 605 NLNLTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAK 664
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
IA WG LP YLG PLG +P+S++FW +++KIQ+KL NW +S +SKGG +TLI
Sbjct: 665 SIADSWGISKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLI 724
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y +SVFK P+ I ++++ RNFLWNG S+G N+ L+ W+ +++PK
Sbjct: 725 NSTLESLPIYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGL 784
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E P WK LI KY ++ + P +FSS+ +PW ++
Sbjct: 785 GIHSVNSTNFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAV 844
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPSS 282
+ F + W + DG FW D+W PL+ + R +ALST + + E W PSS
Sbjct: 845 TECISWFYKNISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSS 904
BLAST of Lag0028684 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.1 bits (627), Expect = 3.5e-61
Identity = 117/299 (39.13%), Postives = 173/299 (57.86%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D ++ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 403 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 462
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
I WG LP YLG PLG KP+S++FW I++KIQ+KL +W +S +SKGG +TLI
Sbjct: 463 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 522
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y LSVFK P+ I ++++ RNFLWNGTS+G N+ L+ W+ V++PK
Sbjct: 523 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 582
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E +P WK LI KY ++ P + ++SS+ +PW ++
Sbjct: 583 GIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 642
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPS 280
F + W + DG FW D+W PL+ + R +ALST + + + W PS
Sbjct: 643 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPS 701
BLAST of Lag0028684 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 246.1 bits (627), Expect = 3.5e-61
Identity = 117/299 (39.13%), Postives = 173/299 (57.86%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D ++ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 497 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 556
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
I WG LP YLG PLG KP+S++FW I++KIQ+KL +W +S +SKGG +TLI
Sbjct: 557 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 616
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y LSVFK P+ I ++++ RNFLWNGTS+G N+ L+ W+ V++PK
Sbjct: 617 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 676
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E +P WK LI KY ++ P + ++SS+ +PW ++
Sbjct: 677 GIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 736
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPS 280
F + W + DG FW D+W PL+ + R +ALST + + + W PS
Sbjct: 737 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPS 795
BLAST of Lag0028684 vs. NCBI nr
Match:
TYK05764.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 239.6 bits (610), Expect = 3.3e-59
Identity = 122/297 (41.08%), Postives = 169/297 (56.90%), Query Frame = 0
Query: 7 DSISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRA 66
++++++HLLFADDILLF +D+++ L+ +I+ F+ G N+N KS+IS +NV R
Sbjct: 133 NNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALGLNVNLNKSTISSINVDVART 192
Query: 67 AWIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTL 126
+AS WG P YLG PL KP S FW I EK+ +KL NW +S +SKG +TL
Sbjct: 193 NQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKVSKKLSNWKYSLLSKGEKITL 252
Query: 127 IQATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK---- 186
I +TLSS P Y LSVFKA SI K ++K RNFLWN ++ Q L L+ W +V +PK
Sbjct: 253 INSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNETQKLHLVRWSMVTSPKLKGG 312
Query: 187 -----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWIS 246
ED P WK I VKY+SS +P +S +SSSR+PW S
Sbjct: 313 LGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYESSVQGDIPYKSNYSSSRSPWHS 372
Query: 247 IVKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAW 277
+++ F+ W +K+ N F FW W PL+ R +ALST+Q+ IS+ W
Sbjct: 373 MIQGLDWFQSQVTWKIKNDNNFSFWHSHWHTNSPLSVHYPRLFALSTKQNSSISDMW 429
BLAST of Lag0028684 vs. NCBI nr
Match:
KAA0041367.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 238.8 bits (608), Expect = 5.7e-59
Identity = 121/296 (40.88%), Postives = 162/296 (54.73%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+I+++HLLFADDILLFV+DD+ + II F+ SG +IN KS+IS +NV R
Sbjct: 341 NINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTE 400
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
IAS WG LPI YLG PLG K + +FW + EKI +KL +W +S +SKGG +TLI
Sbjct: 401 QIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEKINKKLASWKYSMLSKGGKITLI 460
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+++L+S P Y LS+FKAP S CK ++K RNFLW L L+ W + +PK
Sbjct: 461 KSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGL 520
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
ED P WK +I KY+S +P SSSR+PW SI
Sbjct: 521 GISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSI 580
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAW 277
K F++ W +K+G F FW W PL+ R +ALST +D I + W
Sbjct: 581 CKGVEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSLHYPRLFALSTNKDSSIRDMW 636
BLAST of Lag0028684 vs. ExPASy Swiss-Prot
Match:
P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)
HSP 1 Score: 45.8 bits (107), Expect = 9.2e-04
Identity = 36/154 (23.38%), Postives = 75/154 (48.70%), Query Frame = 0
Query: 15 LFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAAWIASCWG 74
LFADD+++++++ + ++IK + SG IN K S++ + + ++A
Sbjct: 698 LFADDMIVYLENTRDSTTKLLEVIKEYSNVSGYKINTHK-SVAFIYTNNNQAEKTVKD-S 757
Query: 75 CPPSSLP--IYYLGTPLGD--KPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLIQAT 134
P + +P + YLG L K + + ++I + + W S G + +++ +
Sbjct: 758 IPFTVVPKKMKYLGVYLTKDVKDLYKENYETLRKEIAEDVNKWKNIPCSWLGRINIVKMS 817
Query: 135 LSSTPLYMLSV--FKAPQSICKQVDKLIRNFLWN 163
+ +Y + KAP S K ++K+I +F+WN
Sbjct: 818 ILPKAIYNFNAIPIKAPLSYFKDLEKIILHFIWN 849
BLAST of Lag0028684 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 250.0 bits (637), Expect = 1.2e-62
Identity = 118/301 (39.20%), Postives = 175/301 (58.14%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D D+ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 605 NLNLTHILFADDILIFVEDRDDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAK 664
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
IA WG LP YLG PLG +P+S++FW +++KIQ+KL NW +S +SKGG +TLI
Sbjct: 665 SIADSWGISKGHLPTSYLGMPLGGRPSSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLI 724
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y +SVFK P+ I ++++ RNFLWNG S+G N+ L+ W+ +++PK
Sbjct: 725 NSTLESLPIYQMSVFKVPKGIAQKIEASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGL 784
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E P WK LI KY ++ + P +FSS+ +PW ++
Sbjct: 785 GIHSVNSTNFALLCKWLWKFLTEKDPLWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAV 844
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPSS 282
+ F + W + DG FW D+W PL+ + R +ALST + + E W PSS
Sbjct: 845 TECISWFYKNISWKVNDGEDISFWLDNWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSS 904
BLAST of Lag0028684 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 117/299 (39.13%), Postives = 173/299 (57.86%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D ++ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 497 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 556
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
I WG LP YLG PLG KP+S++FW I++KIQ+KL +W +S +SKGG +TLI
Sbjct: 557 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 616
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y LSVFK P+ I ++++ RNFLWNGTS+G N+ L+ W+ V++PK
Sbjct: 617 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 676
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E +P WK LI KY ++ P + ++SS+ +PW ++
Sbjct: 677 GIHSVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 736
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPS 280
F + W + DG FW D+W PL+ + R +ALST + + + W PS
Sbjct: 737 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPS 795
BLAST of Lag0028684 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 246.1 bits (627), Expect = 1.7e-61
Identity = 117/299 (39.13%), Postives = 173/299 (57.86%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+++++H+LFADDIL+FV+D ++ + I+ FE SG NIN KS+I +NV DRA
Sbjct: 403 NLNLTHILFADDILIFVEDKEDYVSNLKMILHLFESASGLNINLSKSTIFPINVPTDRAN 462
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
I WG LP YLG PLG KP+S++FW I++KIQ+KL +W +S +SKGG +TLI
Sbjct: 463 SIVDSWGISKGQLPTTYLGMPLGGKPSSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLI 522
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+TL S P+Y LSVFK P+ I ++++ RNFLWNGTS+G N+ L+ W+ V++PK
Sbjct: 523 NSTLESLPIYQLSVFKVPKGIAQKIEAYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGL 582
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
E +P WK LI KY ++ P + ++SS+ +PW ++
Sbjct: 583 GIHFVHSTNFALLCKWLWKFLTEKEPLWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAV 642
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAWVPS 280
F + W + DG FW D+W PL+ + R +ALST + + + W PS
Sbjct: 643 TNCISWFYKNIGWKVNDGEDISFWLDNWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPS 701
BLAST of Lag0028684 vs. ExPASy TrEMBL
Match:
A0A5D3C384 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002530 PE=4 SV=1)
HSP 1 Score: 239.6 bits (610), Expect = 1.6e-59
Identity = 122/297 (41.08%), Postives = 169/297 (56.90%), Query Frame = 0
Query: 7 DSISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRA 66
++++++HLLFADDILLF +D+++ L+ +I+ F+ G N+N KS+IS +NV R
Sbjct: 133 NNLNLTHLLFADDILLFPEDNEDSLNNLKYVIQLFQLALGLNVNLNKSTISSINVDVART 192
Query: 67 AWIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTL 126
+AS WG P YLG PL KP S FW I EK+ +KL NW +S +SKG +TL
Sbjct: 193 NQVASSWGVSTQFFPTSYLGVPLDGKPISKCFWDNIKEKVSKKLSNWKYSLLSKGEKITL 252
Query: 127 IQATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK---- 186
I +TLSS P Y LSVFKA SI K ++K RNFLWN ++ Q L L+ W +V +PK
Sbjct: 253 INSTLSSLPTYQLSVFKASASIYKSIEKTWRNFLWNSSNETQKLHLVRWSMVTSPKLKGG 312
Query: 187 -----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWIS 246
ED P WK I VKY+SS +P +S +SSSR+PW S
Sbjct: 313 LGINRIKDTNFALLNKWLWRFIHEDYPLWKRFIAVKYESSVQGDIPYKSNYSSSRSPWHS 372
Query: 247 IVKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAW 277
+++ F+ W +K+ N F FW W PL+ R +ALST+Q+ IS+ W
Sbjct: 373 MIQGLDWFQSQVTWKIKNDNNFSFWHSHWHTNSPLSVHYPRLFALSTKQNSSISDMW 429
BLAST of Lag0028684 vs. ExPASy TrEMBL
Match:
A0A5A7TI93 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00120 PE=4 SV=1)
HSP 1 Score: 238.8 bits (608), Expect = 2.7e-59
Identity = 121/296 (40.88%), Postives = 162/296 (54.73%), Query Frame = 0
Query: 8 SISISHLLFADDILLFVQDDDEVLDTFFKIIKAFEQTSGPNINFMKSSISGVNVSEDRAA 67
+I+++HLLFADDILLFV+DD+ + II F+ SG +IN KS+IS +NV R
Sbjct: 341 NINLTHLLFADDILLFVEDDEHSIQNLKNIINLFQLASGLSINLNKSTISPINVDAARTE 400
Query: 68 WIASCWGCPPSSLPIYYLGTPLGDKPASASFWSPIVEKIQQKLENWHFSYISKGGCLTLI 127
IAS WG LPI YLG PLG K + +FW + EKI +KL +W +S +SKGG +TLI
Sbjct: 401 QIASQWGISTKFLPINYLGVPLGGKQTTKTFWKNVEEKINKKLASWKYSMLSKGGKITLI 460
Query: 128 QATLSSTPLYMLSVFKAPQSICKQVDKLIRNFLWNGTSSGQNLPLLGWDVVIAPK----- 187
+++L+S P Y LS+FKAP S CK ++K RNFLW L L+ W + +PK
Sbjct: 461 KSSLASLPTYQLSIFKAPVSACKNIEKTWRNFLWKNPPETHKLHLVNWAKITSPKERGGL 520
Query: 188 ----------------------EDQPSWKHLITVKYKSSQVSALPIQSRFSSSRAPWISI 247
ED P WK +I KY+S +P SSSR+PW SI
Sbjct: 521 GISRLKDTNFALLTKWLWRYIHEDSPLWKKIINAKYRSLSKGDIPCVCNHSSSRSPWFSI 580
Query: 248 VKLAPHFEQFAKWDLKDGNKFFFWKDSWLDYGPLNQTLARFYALSTRQDLKISEAW 277
K F++ W +K+G F FW W PL+ R +ALST +D I + W
Sbjct: 581 CKGVEWFQRHVSWKIKNGRSFSFWHSHWHQNSPLSLHYPRLFALSTNKDSSIRDMW 636
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0039950.1 | 2.5e-62 | 39.20 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
| KAA0044556.1 | 3.5e-61 | 39.13 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0041397.1 | 3.5e-61 | 39.13 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| TYK05764.1 | 3.3e-59 | 41.08 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| KAA0041367.1 | 5.7e-59 | 40.88 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P08548 | 9.2e-04 | 23.38 | LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7T9I7 | 1.2e-62 | 39.20 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TIB8 | 1.7e-61 | 39.13 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TR15 | 1.7e-61 | 39.13 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5D3C384 | 1.6e-59 | 41.08 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| A0A5A7TI93 | 2.7e-59 | 40.88 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
