Lag0028683 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028683
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Gag/pol protein
Location	chr8: 28244493 .. 28244948 (+)
RNA-Seq Expression	Lag0028683
Synteny	Lag0028683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCTATTATTTCCCTGCTTAAAAATGAACAACTTTCCAGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACAATACTCGTGGTTGAGGACTTAAGGTTCATCTTAACGGAGCAATGTCCTCCCATTCCCCCTCGCACTACCGCTCAGGCAGTAAAAGATGCCTACGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATACTGGTCAGCTTGTCTGAAGTATTGGCCAAGCGTTACGAGAACGTGGAAACAGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTCCGTCCTACCAGCTCCTCCACGACACCCTGAAGAACATCTTCAATGCCAAGATGCTGGAAGGTCAATCTGTTCGGGAACATGTCCTGGACTACTGCAGGGATAAAAGCCCTAGCGCAGCGGAAACATTCAGAATACCACACTGA

mRNA sequence

ATGTCTTCCTCTATTATTTCCCTGCTTAAAAATGAACAACTTTCCAGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACAATACTCGTGGTTGAGGACTTAAGGTTCATCTTAACGGAGCAATGTCCTCCCATTCCCCCTCGCACTACCGCTCAGGCAGTAAAAGATGCCTACGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATACTGGTCAGCTTGTCTGAAGTATTGGCCAAGCGTTACGAGAACGTGGAAACAGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTCCGTCCTACCAGCTCCTCCACGACACCCTGAAGAACATCTTCAATGCCAAGATGCTGGAAGGTCAATCTGTTCGGGAACATGTCCTGGACTACTGCAGGGATAAAAGCCCTAGCGCAGCGGAAACATTCAGAATACCACACTGA

Coding sequence (CDS)

ATGTCTTCCTCTATTATTTCCCTGCTTAAAAATGAACAACTTTCCAGCGAAAACTTTCCACAATGGAAATCGAATCTTAATACAATACTCGTGGTTGAGGACTTAAGGTTCATCTTAACGGAGCAATGTCCTCCCATTCCCCCTCGCACTACCGCTCAGGCAGTAAAAGATGCCTACGAACGCTGGACTAAGGCCAATGAAAAGGTCAAAGTCTATATACTGGTCAGCTTGTCTGAAGTATTGGCCAAGCGTTACGAGAACGTGGAAACAGCCAGGGAGATTATGAATTCCCTGCAGGAGATGTTTGGACTTCCGTCCTACCAGCTCCTCCACGACACCCTGAAGAACATCTTCAATGCCAAGATGCTGGAAGGTCAATCTGTTCGGGAACATGTCCTGGACTACTGCAGGGATAAAAGCCCTAGCGCAGCGGAAACATTCAGAATACCACACTGA

Protein sequence

MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYERWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNAKMLEGQSVREHVLDYCRDKSPSAAETFRIPH

Homology

[Close]

BLAST of Lag0028683 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 79/133 (59.40%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYE 60
           MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNA 120
            WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+EMFG PS Q+  + +K ++NA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 KMLEGQSVREHVL 134
           +M EGQSVREHVL
Sbjct: 121 RMKEGQSVREHVL 133

[Close]

BLAST of Lag0028683 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.9e-39
Identity = 79/133 (59.40%), Postives = 108/133 (81.20%), Query Frame = 0


Query: 1   MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYE 60
           MSSSII+LLK +QL+ EN+  WKS LN ILV+ DLRF+L E+CPP P +  +Q+VKDAY+
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNA 120
            WTKAN+K  +Y+L SLS++L+K++E + TAR+IM+SL+EMFG PS Q+  + +K ++NA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 KMLEGQSVREHVL 134
           +M EGQSVREHVL
Sbjct: 121 RMKEGQSVREHVL 133

[Close]

BLAST of Lag0028683 vs. NCBI nr
Match: XP_022158568.1 (uncharacterized protein LOC111025021 [Momordica charantia])

HSP 1 Score: 169.5 bits (428), Expect = 2.3e-38
Identity = 78/134 (58.21%), Postives = 106/134 (79.10%), Query Frame = 0


Query: 1   MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYE 60
           MS+S I LL +++L+ +N+  WKSNLNTILV++DLRF+LTE+CPP P     + V+DAY+
Sbjct: 7   MSTSTIQLLASDKLNGDNYGIWKSNLNTILVIDDLRFVLTEECPPAPAPNANRTVRDAYD 66

Query: 61  RWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNA 120
           RW KANEK +VYIL S+SEVL+K++E + T REIM+SLQ +FG PS  L+HD +K ++N 
Sbjct: 67  RWVKANEKARVYILASISEVLSKKHERLATTREIMDSLQALFGQPSTTLMHDAVKYVYNC 126

Query: 121 KMLEGQSVREHVLD 135
           +M EG SVREHVL+
Sbjct: 127 RMKEGSSVREHVLN 140

[Close]

BLAST of Lag0028683 vs. NCBI nr
Match: XP_038882358.1 (uncharacterized protein LOC120073622 [Benincasa hispida])

HSP 1 Score: 169.1 bits (427), Expect = 3.0e-38
Identity = 77/134 (57.46%), Postives = 109/134 (81.34%), Query Frame = 0


Query: 1   MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYE 60
           M+SSII LL +E+L+ +N+  WKSNLNTILVV+DLRF+LTE+CP  P     + V++AY+
Sbjct: 1   MNSSIIQLLTSEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPTSNANRTVREAYD 60

Query: 61  RWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNA 120
           RW KANEK ++YIL S+S+VLAK++E++ TA+EI++SL+E+FG PS+ L H+ +K+I+  
Sbjct: 61  RWVKANEKARIYILASMSDVLAKKHESLATAKEIIDSLRELFGQPSWSLRHEAIKHIYTK 120

Query: 121 KMLEGQSVREHVLD 135
           +M EG SVREHVLD
Sbjct: 121 RMKEGTSVREHVLD 134

[Close]

BLAST of Lag0028683 vs. NCBI nr
Match: KAA0061339.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-37
Identity = 75/134 (55.97%), Postives = 105/134 (78.36%), Query Frame = 0


Query: 1   MSSSIISLLKNEQLSSENFPQWKSNLNTILVVEDLRFILTEQCPPIPPRTTAQAVKDAYE 60
           M+S+ +++L  ++L+  N+  WK+ +NT+L+++DLRF+L E+CP +P     Q V++ YE
Sbjct: 1   MTSATLNMLAADKLNGNNYAAWKNTINTVLIIDDLRFVLVEECPQVPAANATQTVREPYE 60

Query: 61  RWTKANEKVKVYILVSLSEVLAKRYENVETAREIMNSLQEMFGLPSYQLLHDTLKNIFNA 120
           RW KANEK + YIL SLSEVLAK++E++ TAREIM+SLQEMFG  SYQ+ HD LK I+NA
Sbjct: 61  RWAKANEKARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNA 120

Query: 121 KMLEGQSVREHVLD 135
           +M EG SVREHVL+
Sbjct: 121 RMNEGASVREHVLN 134

The following BLAST results are available for this feature:

BLAST of Lag0028683 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	5.9e-39	59.40	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	5.9e-39	59.40	gag/pol protein [Cucumis melo var. makuwa]	[more]
XP_022158568.1	2.3e-38	58.21	uncharacterized protein LOC111025021 [Momordica charantia]	[more]
XP_038882358.1	3.0e-38	57.46	uncharacterized protein LOC120073622 [Benincasa hispida]	[more]
KAA0061339.1	2.5e-37	55.97	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Lag0028683 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 6..133
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 6..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028683.1	Lag0028683.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding