Lag0028674 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028674
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr8: 28034719 .. 28035189 (+)
RNA-Seq Expression	Lag0028674
Synteny	Lag0028674

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTTCAAGACTTCCTCAATGGTCGATGTCATGAACATGTCTTACATCGGTTCTATTGCCCATTGTTTCTTCAATGAACTGACGTTGCAAGAAGATACATCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTTACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGTCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATATTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCACTATCCATCCAAGAGGTCCAAGATTGA

mRNA sequence

ATGTCGTTCAAGACTTCCTCAATGGTCGATGTCATGAACATGTCTTACATCGGTTCTATTGCCCATTGTTTCTTCAATGAACTGACGTTGCAAGAAGATACATCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTTACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGTCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATATTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCACTATCCATCCAAGAGGTCCAAGATTGA

Coding sequence (CDS)

ATGTCGTTCAAGACTTCCTCAATGGTCGATGTCATGAACATGTCTTACATCGGTTCTATTGCCCATTGTTTCTTCAATGAACTGACGTTGCAAGAAGATACATCTTCTATCGTTGCAGGCCAAGGAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTTACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGTCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTATATTGCAAGATGATCAGCCACAGTGTTCTACTTCGATCGCTTCACTATCCATCCAAGAGGTCCAAGATTGA

Protein sequence

MSFKTSSMVDVMNMSYIGSIAHCFFNELTLQEDTSSIVAGQGTTLQGAYTNDKFLVKYNPLFEPDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIAQLKSQIENQHIVESSQTQVIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD

Homology

[Close]

BLAST of Lag0028674 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 50/93 (53.76%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 64  PDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIAQLKSQIENQHIVESSQTQ 123
           P   +++VM+T+  T E+RMAE+++ +N LMKA+EEKD +IA LK+ IE++   ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD 157
            IKN +KGK I+Q+ QPQ STSIASLS+Q++Q+
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQE 169

[Close]

BLAST of Lag0028674 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 7.3e-16
Identity = 48/93 (51.61%), Postives = 73/93 (78.49%), Query Frame = 0


Query: 64  PDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIAQLKSQIENQHIVESSQTQ 123
           P   +++VM+T+  T E+RMAE+++ +N LMKA+EE+D +IA LK+ IE++  +ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTH 136

Query: 124 VIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD 157
           +IKN +KGK I+Q+ QPQ STSIASLS+Q++ +
Sbjct: 137 IIKNVNKGKAIMQESQPQNSTSIASLSVQQLHE 169

[Close]

BLAST of Lag0028674 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 49/93 (52.69%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 64  PDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIAQLKSQIENQHIVESSQTQ 123
           P   +++VM+T+  T E+RMAE+++ +N LMKA+EE+D +IA LK+ IE++   ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTH 136

Query: 124 VIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD 157
            IKN +KGK I+Q+ QPQ STSIASLS+Q++Q+
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQE 169

[Close]

BLAST of Lag0028674 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 52/106 (49.06%), Postives = 77/106 (72.64%), Query Frame = 0


Query: 57  KYNPLFE------PDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIAQLKSQ 116
           +YN L E      P   +++VM+T+  T E+RMAE+++ +N LMKA+EE+D +IA LK+ 
Sbjct: 64  EYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 117 IENQHIVESSQTQVIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD 157
           IE++   ESS T  +KN +KGK I+Q+ QPQ STSIASLS+Q++Q+
Sbjct: 124 IESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASLSVQQLQE 169

[Close]

BLAST of Lag0028674 vs. NCBI nr
Match: KAA0048375.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] >TYK04075.1 retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 2.1e-15
Identity = 52/118 (44.07%), Postives = 80/118 (67.80%), Query Frame = 0


Query: 52  DKFLVKYNPLFE-------------PDSYVVTVMMTETRTMEERMAEMQEHINNLMKAIE 111
           D  ++K NP  +             P   +++VM+T+  T E+RMAE+++ +N LMKA+E
Sbjct: 52  DGIIIKENPAIDEHNSLSDRSNEEAPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVE 111

Query: 112 EKDSQIAQLKSQIENQHIVESSQTQVIKNHDKGKTILQDDQPQCSTSIASLSIQEVQD 157
           E+D +IA LK+ I+++   ESS T+ IKN +KGK I+Q+ QPQ STSIASLS+Q++Q+
Sbjct: 112 ERDFEIALLKNHIKSRDAAESSHTRTIKNVNKGKVIMQESQPQNSTSIASLSVQQLQE 169

The following BLAST results are available for this feature:

BLAST of Lag0028674 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050518.1	5.6e-16	53.76	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051994.1	7.3e-16	51.61	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp...	[more]
KAA0047477.1	1.2e-15	52.69	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0034095.1	1.2e-15	49.06	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048375.1	2.1e-15	44.07	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa] ...	[more]

BLAST of Lag0028674 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 76..110

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028674.1	Lag0028674.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity