Lag0028668 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028668
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionOrf114a protein
Locationchr8: 27931157 .. 27932713 (+)
RNA-Seq ExpressionLag0028668
SyntenyLag0028668
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCTACAGAGGTCGTCAATTTCACGAAACCTCGAGGGCGTCAATTTCACAACCCTCGACTTAGGTACATCAATTTCATGTCCCTAAGCCCTGTGTAGGCATCTCTGAACGTACATCAATTTCATGCACGCTAGATTACACTTATAAATCATTTAAACTCAATCCCTTTAATGGGATTTAAAAACCGCCAACTCAAATATTTTAAACATTAACAAATACGAACAGTAATAATAATTTTCATGCTTTCAATGACTTATCAAAAACTCATGCATAATTAAAATATGCTCAACTTTCATGCTTTTAGTAAATAATAACAAATTTCCAAGAACAACTCATAAAAATCGAGTATTTTAGAAAGTCAAGTATGTGCACCCAATTAAAAAGGGTTCAATAGTAAGTTCACTTACCTTGGCTTAATATTATGAACAAACTAAATTAACTCTTTAACTTCAAGGCCCTTAACCACACAACACAACGACGCTAGTTGTTCGGGGTCTCAAATCCGCTCTGATCCTCCAATTGAGTCACCAACACACTAACGACCTTGAAATCACAAGGTAAAACCAATGGGTATTTAATTTTACTCAATAAACAACCTCGAAACCACTATAAAACTCTTACCCATTGCTGAAATTTGCCAAAACCCAACAATAAAAATTGAACTTTGAAGAAAAACGCATCCTCTACACTACCTTGCCGGAAAACACGCCGCGCCGCCGCCCAAAACCGCCGGAGAACACTCTCAATCCAAGACCCACGCTGCACAGAGGAGAAACGCCGGCCGTTTGCTGCTGTTGTCGTACCTGCGAACCGAAAACGTCGAAGACCCACAAACAAGAAACCCACGGCTGAACCTTGCTGAAGCCGCACGCGCACCACCGCCGGAGGTTCACTGCACTTGTCGCGGATTCGCCGGAGGAGTTGCGTTGTCGCCGGAATCCTCTGCAACGCCGCCTGCTACCGCCCGAAGAAGAAGGGGAATCGAAAAGGGGGGCTGGTCGGCTGAAGAGGGAGAAGAAGGAAGAGAGGAGATGTGGAGAAGATGGTGCCTTGGGCTGCGTGCGGTTAGAATAAAAAGGGGATAACTTAGGGTTTTACTCCATCTTCTTAATATTTACAAAAACGCCCCCCATTAGTCCTTTTTTTTTTTTTTTAAGGAAACTCAAAGATTAAACTCATTTTTTTTTCCAATGGTTTCCAAATCTTAAATCTTGGGAATTTCCCTTCAAACTCCAATTTAATTCCAACTTAGGGATTTTAAAAATAATCCCCATTTATGGGCGTTACACTATCCCTATCCCGCGGGTACAGTGTTTGAATCAATAGAGAACTTTTTCTTCTGTATCTGTATGAATCGATATTATTACATTCCAATTCCTTCCCGATACCTCCCAAGGAAAATTCCGAATTGGATCCAAAACTGACGAGTTAGTGTGAGCTTATCCATGCAGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGCATGA

mRNA sequence

ATGTCTCCTACAGAGGTCGTCAATTTCACGAAACCTCGAGGGCGTCAATTTCACAACCCTCGACTTAGAAAAACGCATCCTCTACACTACCTTGCCGGAAAACACGCCGCGCCGCCGCCCAAAACCGCCGGAGAACACTCTCAATCCAAGACCCACGCTGCACAGAGGAGAAACGCCGGCCGTTTGCTGCTGTTGTCGTACCTGCGAACCGAAAACGTCGAAGACCCACAAACAAGAAACCCACGGCTGAACCTTGCTGAAGCCGCACGCGCACCACCGCCGGAGGTTCACTGCACTTGTCGCGGATTCGCCGGAGGAGTTGCGTTGTCGCCGGAATCCTCTGCAACGCCGCCTGCTACCGCCCGAAGAAGAAGGGGAATCGAAAAGGGGGGCTGGTCGGCTGAAGAGGGAGAAGAAGGAAGAGAGGAGATGTGGAGAAGATGGTGCCTTGGGCTGCGTGCGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGCATGA

Coding sequence (CDS)

ATGTCTCCTACAGAGGTCGTCAATTTCACGAAACCTCGAGGGCGTCAATTTCACAACCCTCGACTTAGAAAAACGCATCCTCTACACTACCTTGCCGGAAAACACGCCGCGCCGCCGCCCAAAACCGCCGGAGAACACTCTCAATCCAAGACCCACGCTGCACAGAGGAGAAACGCCGGCCGTTTGCTGCTGTTGTCGTACCTGCGAACCGAAAACGTCGAAGACCCACAAACAAGAAACCCACGGCTGAACCTTGCTGAAGCCGCACGCGCACCACCGCCGGAGGTTCACTGCACTTGTCGCGGATTCGCCGGAGGAGTTGCGTTGTCGCCGGAATCCTCTGCAACGCCGCCTGCTACCGCCCGAAGAAGAAGGGGAATCGAAAAGGGGGGCTGGTCGGCTGAAGAGGGAGAAGAAGGAAGAGAGGAGATGTGGAGAAGATGGTGCCTTGGGCTGCGTGCGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGCATGA

Protein sequence

MSPTEVVNFTKPRGRQFHNPRLRKTHPLHYLAGKHAAPPPKTAGEHSQSKTHAAQRRNAGRLLLLSYLRTENVEDPQTRNPRLNLAEAARAPPPEVHCTCRGFAGGVALSPESSATPPATARRRRGIEKGGWSAEEGEEGREEMWRRWCLGLRALCTLRIGIHFLKDSGFRALVGLRDPFDDLCCVA
Homology
[Close]
BLAST of Lag0028668 vs. NCBI nr
Match: NP_063976.1 (orf114a gene product [Beta vulgaris subsp. vulgaris] >YP_004222305.1 hypothetical protein BevumaM_p070 [Beta vulgaris subsp. maritima] >YP_004842110.1 hypothetical protein BemaM_p065 [Beta macrocarpa] >CBJ14041.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBJ17532.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBL54123.1 hypothetical protein [Beta vulgaris subsp. maritima] >CBX24914.1 hypothetical protein [Beta macrocarpa] >BAA99288.1 orf114a [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 69.7 bits (169), Expect = 3.0e-08
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 0 

Query: 155 LCTLRIGIHFLKDSGFRALVGLRDPFDDLCCV 187
           LCTLRIGIHFL D GFRALVGLRDPFDDLCCV
Sbjct: 3   LCTLRIGIHFLTDPGFRALVGLRDPFDDLCCV 34

[Close]
BLAST of Lag0028668 vs. NCBI nr
Match: KAF3583690.1 (hypothetical protein F2Q69_00032187 [Brassica cretica])

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-08
Identity = 29/32 (90.62%), Postives = 29/32 (90.62%), Query Frame = 0 

Query: 155 LCTLRIGIHFLKDSGFRALVGLRDPFDDLCCV 187
           LCTLRIGIHFLKD GFRA  GLRDPFDDLCCV
Sbjct: 3   LCTLRIGIHFLKDPGFRAFAGLRDPFDDLCCV 34

The following BLAST results are available for this feature:
BLAST of Lag0028668 vs. NCBI nr
Match NameE-valueIdentityDescription
NP_063976.13.0e-0893.75orf114a gene product [Beta vulgaris subsp. vulgaris] >YP_004222305.1 hypothetica... [more]
KAF3583690.15.1e-0890.63hypothetical protein F2Q69_00032187 [Brassica cretica][more]
BLAST of Lag0028668 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 122..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 109..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028668.1Lag0028668.1mRNA