Lag0028628 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028628
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 26822790 .. 26824501 (+)
RNA-Seq ExpressionLag0028628
SyntenyLag0028628
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTGCTGCAGTGGTGAACCAAGTCGCAGAAGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAGAGGAATAACCCTTACTCTAACTTTTATAATCCAGGTTGGCGCAACCACCCCAACTTCTCATGGGGAGGACAAGGAAGTAGTGTGCAAGCGCAACAAAAGGTGAACCAGTCGGGATTTGCTAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTCTATTATTCCCTTATCTGGTAATATCATATCATCCTCACTCTCTGACACCCCTGCCCTTCGGCATAGCATCGTGATAGTGTTGGGGAAAAACAACTTCCCCACCTTTTTCTGCCAGCAGTCAAGAATCTCAAAGAAATTATTTTTCCTACGTCAATACTCATGAGCGAAGAATAGCAAAGCAAGCAATACCTGGTCCCGAGACACAGTTGAGTCGTGAGTTGTTGGCAGTAAGCGCAGCCTAATGAAACCCATCCAGTGTTGGCCCGCTCTTCAAATAAGCAGCCTGAAAGTGTGCTTCTGCGTCTGCGACAACCTCCATTGGGCCCCCTCAATGCCAACCTCTTGGACAGCCACACTTAGCTGGTAGCTAGATGGTGCAACCACCATCTCATTAAAGGCTACATGCGGAAAATCCTGGAGATCGAACAAATCATTAACGGCTTCTGGGCTCCAGTCCACGGGCATTCCTCGAACTATAACCTGAAATTCTCCTTATCGTCAAATTTGCGTAAAATTCTCGAACAAGGTTGGAATTAACAGACGCTGGTTTCGCACAAAATTGGCTCCAGCTAAGTTCTCTATTCCAGTCCTCAAGAACCGTGGCAAATCATCGCCAAATCCTCGTTCAAACAGGAAGTCCCGTTTTCAGCATCTCCTGGTATTTTGCTAGAGCAAATTGTTGATGAAGCGAATAAAAGGTAACCTTTGCTCCTCAACCTCGTCAGCCTCAGCAATACCTTTGCCCTTGTCTTCTCTTCGCTTGGCAAAATCTCTTCCTCAGCCTTCTTTGCTTCTTCTTCTCTTGCCTTGTCTCAGCCTCCTTCTTTTCCACTCTCTTCTTCTTCCTCAGAATCATGATGGAGGTGATGGGGTATTCCGGATCACCCTGATGGGCCCCTTCCTCTTAATGCGGCGTCGCTTTGGTGGTTCAGGCATTATTACTTCTACCCGAGCCTCCTGCACGGTTCCTGTTCATTCCCTTCTTCAGGCACCACGCGGTCTGTTCATCCGACCTCGTCAGTCTCTTTTCTTGATTCTTCTCAACATTTACTTCTTGAACCGTATCTGGGTTTGCACTTCAAGTCCTTGTGTATTTCCTCTCCGTTGCAGTGGCAACATCCTCTCCACCTCCTGAACCTTTCTTGTTCTGCAACCCTCTGTTGCTTCCTTCTTCTCTTGGCTTCTTTCTCCTCCGGGTCTTTTTCTTTTTGCCTTTACTTTCTGTACCTCAGGGTATCGCAACCTCTTCCACCTCATTCTCTCTTCTTTCTTGCTCGTTTTTCGCCATGAAACTCAAAGATTTTACAGAGAAAGCACGAAGGAAGAAGAAAAGAATACGAACAGGAAGAAGTAAATCGAAGTGA

mRNA sequence

ATGGAGCCTGCTGCAGTGGTGAACCAAGTCGCAGAAGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAGAGGAATAACCCTTACTCTAACTTTTATAATCCAGGTTGGCGCAACCACCCCAACTTCTCATGGGGAGGACAAGGAAGTAGTGTGCAAGCGCAACAAAAGTGTTGGGGAAAAACAACTTCCCCACCTTTTTCTGCCAGCAGTCAAGAATCTCAAAGAAATTATTTTTCCTACGTCAATACTCATGAGCGAAGAATAGCAAAGCAAGCAATACCTGGTCCCGAGACACAGTTGAGTCGTGAGTTGTTGGCAAGCAAATTGTTGATGAAGCGAATAAAAGGTAACCTTTGCTCCTCAACCTCGTCAGCCTCAGCAATACCTTTGCCCTTGTCTTCTCTTCGCTTGGCAAAATCTCTTCCTCAGCCTTCTTTGCTTCTTCTTCTCTTGCCTTGTCTCAGCCTCCTTCTTTTCCACTCTCTTCTTCTTCCTCAGAATCATGATGGAGGTGATGGGGTATTCCGGATCACCCTGATGGGCCCCTTCCTCTTAATGCGGCGTCGCTTTGGTGGTTCAGGCATTATTACTTCTACCCGAGCCTCCTGCACGGTTCCTGTTCATTCCCTTCTTCAGGCACCACGCGTGGCAACATCCTCTCCACCTCCTGAACCTTTCTTGTTCTGCAACCCTCTGTTGCTTCCTTCTTCTCTTGGCTTCTTTCTCCTCCGGGTCTTTTTCTTTTTGCCTTTACTTTCTGTACCTCAGGGTATCGCAACCTCTTCCACCTCATTCTCTCTTCTTTCTTGCTCGTTTTTCGCCATGAAACTCAAAGATTTTACAGAGAAAGCACGAAGGAAGAAGAAAAGAATACGAACAGGAAGAAGTAAATCGAAGTGA

Coding sequence (CDS)

ATGGAGCCTGCTGCAGTGGTGAACCAAGTCGCAGAAGAAGCATGTGTCTATTGTGGTGAAGATCACAACTACGAGTTTTGCCCCAGCAATCCAGCTTCTGTGTTTTTTGTAGGTAATCAGAGGAATAACCCTTACTCTAACTTTTATAATCCAGGTTGGCGCAACCACCCCAACTTCTCATGGGGAGGACAAGGAAGTAGTGTGCAAGCGCAACAAAAGTGTTGGGGAAAAACAACTTCCCCACCTTTTTCTGCCAGCAGTCAAGAATCTCAAAGAAATTATTTTTCCTACGTCAATACTCATGAGCGAAGAATAGCAAAGCAAGCAATACCTGGTCCCGAGACACAGTTGAGTCGTGAGTTGTTGGCAAGCAAATTGTTGATGAAGCGAATAAAAGGTAACCTTTGCTCCTCAACCTCGTCAGCCTCAGCAATACCTTTGCCCTTGTCTTCTCTTCGCTTGGCAAAATCTCTTCCTCAGCCTTCTTTGCTTCTTCTTCTCTTGCCTTGTCTCAGCCTCCTTCTTTTCCACTCTCTTCTTCTTCCTCAGAATCATGATGGAGGTGATGGGGTATTCCGGATCACCCTGATGGGCCCCTTCCTCTTAATGCGGCGTCGCTTTGGTGGTTCAGGCATTATTACTTCTACCCGAGCCTCCTGCACGGTTCCTGTTCATTCCCTTCTTCAGGCACCACGCGTGGCAACATCCTCTCCACCTCCTGAACCTTTCTTGTTCTGCAACCCTCTGTTGCTTCCTTCTTCTCTTGGCTTCTTTCTCCTCCGGGTCTTTTTCTTTTTGCCTTTACTTTCTGTACCTCAGGGTATCGCAACCTCTTCCACCTCATTCTCTCTTCTTTCTTGCTCGTTTTTCGCCATGAAACTCAAAGATTTTACAGAGAAAGCACGAAGGAAGAAGAAAAGAATACGAACAGGAAGAAGTAAATCGAAGTGA

Protein sequence

MEPAAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQRNNPYSNFYNPGWRNHPNFSWGGQGSSVQAQQKCWGKTTSPPFSASSQESQRNYFSYVNTHERRIAKQAIPGPETQLSRELLASKLLMKRIKGNLCSSTSSASAIPLPLSSLRLAKSLPQPSLLLLLLPCLSLLLFHSLLLPQNHDGGDGVFRITLMGPFLLMRRRFGGSGIITSTRASCTVPVHSLLQAPRVATSSPPPEPFLFCNPLLLPSSLGFFLLRVFFFLPLLSVPQGIATSSTSFSLLSCSFFAMKLKDFTEKARRKKKRIRTGRSKSK
Homology
BLAST of Lag0028628 vs. NCBI nr
Match: XP_022926214.1 (uncharacterized protein LOC111433394 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 7.6e-20
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 5   AVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ------RNNPYSNFYNPGWRNHPN 64
           AV+NQ A E+CVYCGE+H ++ CPSNPAS+F+VGNQ      +NNP+SN YNPGWRNHPN
Sbjct: 311 AVINQTAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPN 370

Query: 65  FSWGGQGS 67
           FSW GQGS
Sbjct: 371 FSWKGQGS 378

BLAST of Lag0028628 vs. NCBI nr
Match: XP_030509259.1 (uncharacterized protein LOC115723937 [Cannabis sativa])

HSP 1 Score: 107.5 bits (267), Expect = 2.2e-19
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 0

Query: 1   MEPAAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ----RNNPYSNFYNPGWRNH 60
           ++PAA + Q AE +CVYCG+ H +E CPSNPASV +VGNQ     NNPYSN YNP W++H
Sbjct: 284 VQPAAAI-QRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHH 343

Query: 61  PNFSWGGQGSSVQAQQKCWGKTTSPP-FSASSQESQ 92
           PNFSWGGQG+S    Q+  GK + PP FS   +  Q
Sbjct: 344 PNFSWGGQGASSSGAQQAQGKQSFPPGFSQQPRPQQ 378

BLAST of Lag0028628 vs. NCBI nr
Match: XP_022929949.1 (uncharacterized protein LOC111436411 [Cucurbita moschata])

HSP 1 Score: 105.5 bits (262), Expect = 8.4e-19
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 4   AAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ------RNNPYSNFYNPGWRNHP 63
           AA +NQ A E+CVYCGE+H ++ CPSNPAS+F+VGNQ      +NNP+SN YNPGWRNHP
Sbjct: 339 AAAINQTAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNLKNNPFSNTYNPGWRNHP 398

Query: 64  NFSWGGQ 65
           NFSW GQ
Sbjct: 399 NFSWKGQ 405

BLAST of Lag0028628 vs. NCBI nr
Match: XP_030487620.1 (uncharacterized protein LOC115704559 [Cannabis sativa])

HSP 1 Score: 104.0 bits (258), Expect = 2.4e-18
Identity = 52/95 (54.74%), Postives = 65/95 (68.42%), Query Frame = 0

Query: 1   MEPAAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ----RNNPYSNFYNPGWRNH 60
           ++PAA + Q AE +CVYCG+ H +E CPSNPASV +VGNQ     NNPYSN YNPGW++H
Sbjct: 116 VQPAAAI-QRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPGWKHH 175

Query: 61  PNFSWGGQGSSVQAQQKCWGKTTSPPFSASSQESQ 92
           PNFSWGGQG+S    Q    ++  P FS   +  Q
Sbjct: 176 PNFSWGGQGASSSGAQGQGKQSFPPGFSQQPRPQQ 209

BLAST of Lag0028628 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-18
Identity = 53/96 (55.21%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 1   MEPAAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ----RNNPYSNFYNPGWRNH 60
           ++PAA + Q AE +CVYCG+ H +E CPSN ASV +VGNQ     NNPYSN YNP W++H
Sbjct: 218 VQPAAAI-QRAEISCVYCGDGHTFENCPSNLASVCYVGNQNFNRNNNPYSNSYNPAWKHH 277

Query: 61  PNFSWGGQGSSVQAQQKCWGKTTSPP-FSASSQESQ 92
           PNFSWGGQG+S    Q+  GK + PP FS   +  Q
Sbjct: 278 PNFSWGGQGASSSGAQQAQGKQSFPPGFSQQPRSHQ 312

BLAST of Lag0028628 vs. ExPASy TrEMBL
Match: A0A6J1EEI2 (uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC111433394 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 0

Query: 5   AVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ------RNNPYSNFYNPGWRNHPN 64
           AV+NQ A E+CVYCGE+H ++ CPSNPAS+F+VGNQ      +NNP+SN YNPGWRNHPN
Sbjct: 311 AVINQTAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNPKNNPFSNTYNPGWRNHPN 370

Query: 65  FSWGGQGS 67
           FSW GQGS
Sbjct: 371 FSWKGQGS 378

BLAST of Lag0028628 vs. ExPASy TrEMBL
Match: A0A6J1EQ90 (uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC111436411 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-19
Identity = 45/67 (67.16%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 4   AAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ------RNNPYSNFYNPGWRNHP 63
           AA +NQ A E+CVYCGE+H ++ CPSNPAS+F+VGNQ      +NNP+SN YNPGWRNHP
Sbjct: 339 AAAINQTAAESCVYCGEEHTFDQCPSNPASIFYVGNQASQGNLKNNPFSNTYNPGWRNHP 398

Query: 64  NFSWGGQ 65
           NFSW GQ
Sbjct: 399 NFSWKGQ 405

BLAST of Lag0028628 vs. ExPASy TrEMBL
Match: U5CZQ0 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-18
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 0

Query: 1   MEPAAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ----RNNPYSNFYNPGWRNH 60
           ++PAA + Q AE +CVYCG+ H +E CPSNPASV +VGNQ     NNPYSN YNP W++H
Sbjct: 17  VQPAAAI-QRAEISCVYCGDGHTFENCPSNPASVCYVGNQNFNRNNNPYSNSYNPAWKHH 76

Query: 61  PNFSWGGQGSSVQAQQKCWGKTTSPP 83
           PNFSWGGQG+S    Q   GK + PP
Sbjct: 77  PNFSWGGQGASSSGAQ-AQGKQSFPP 100

BLAST of Lag0028628 vs. ExPASy TrEMBL
Match: A0A6J1H7E4 (uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC111461168 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-18
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 0

Query: 4   AAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFV------GNQRNNPYSNFYNPGWRNHP 63
           AAV+ Q A E+CVYCGE+H ++ CP NPAS+ +V      GNQ+NNP SN YNPGWRNHP
Sbjct: 301 AAVMTQTATESCVYCGEEHTFDQCPRNPASILYVRNQASQGNQKNNPSSNTYNPGWRNHP 360

Query: 64  NFSWGGQGS 67
           NFSW GQGS
Sbjct: 361 NFSWKGQGS 369

BLAST of Lag0028628 vs. ExPASy TrEMBL
Match: A0A6J1G7Q6 (uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC111451598 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.6e-15
Identity = 43/69 (62.32%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 4   AAVVNQVAEEACVYCGEDHNYEFCPSNPASVFFVGNQ------RNNPYSNFYNPGWRNHP 63
           A V+ Q A E+CVYCGE H ++ CPSNPAS+F+VGNQ      + NP SN YNPGWRNHP
Sbjct: 280 ATVMIQTATESCVYCGEKHTFDQCPSNPASIFYVGNQASQGNPKTNPSSNTYNPGWRNHP 339

Query: 64  NFSWGGQGS 67
           NF   GQGS
Sbjct: 340 NFLCKGQGS 348

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022926214.17.6e-2069.12uncharacterized protein LOC111433394 [Cucurbita moschata][more]
XP_030509259.12.2e-1956.25uncharacterized protein LOC115723937 [Cannabis sativa][more]
XP_022929949.18.4e-1967.16uncharacterized protein LOC111436411 [Cucurbita moschata][more]
XP_030487620.12.4e-1854.74uncharacterized protein LOC115704559 [Cannabis sativa][more]
XP_030507648.13.2e-1855.21uncharacterized protein LOC115722545 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EEI23.7e-2069.12uncharacterized protein LOC111433394 OS=Cucurbita moschata OX=3662 GN=LOC1114333... [more]
A0A6J1EQ904.1e-1967.16uncharacterized protein LOC111436411 OS=Cucurbita moschata OX=3662 GN=LOC1114364... [more]
U5CZQ02.0e-1859.30Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s03373p00005610... [more]
A0A6J1H7E47.7e-1865.22uncharacterized protein LOC111461168 OS=Cucurbita moschata OX=3662 GN=LOC1114611... [more]
A0A6J1G7Q64.6e-1562.32uncharacterized protein LOC111451598 OS=Cucurbita moschata OX=3662 GN=LOC1114515... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028628.1Lag0028628.1mRNA