Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGCGAAAGTGGAATTGGAGAAATTCGACTGGAAGGGTGACTTCGGGCTATGGAGGAGAAAGATGAAAGCTCTTCTAGTCCAACAGAAGGTTGCTAACTTCTTGAACCAGGTAAGTTACCTACATCCTTGACTAAAGATGAGAAAGATGAAATGTGTGGGATTGCATATAGTTCTATAATTCTTCACCTCTCAGATAATGTTCATTGTAGGGTTAGTAAAATTGAAATAGTCGATGAATTATTGTGGTCTAAACTTGAAGAACTTTATTTGCTCAAAACATTAACTAATCAAAATTTCTTAAAGGAACATTTCTTCACCTATAAAATGGATTCGAACAAAAACCTTGAGGAAAATCTTGATGATTTTAATACAACTTGTACTGAATTAGCTAATGCCGGTGAAGAAATAAAATCTCAAGATCATGTTGTAATCCTCTTAAAGTCTTTGCTCGAATCTTATAAAGAAGTAAAAGTCGCTATAAAGTATGGTAGAGACAAATTGACACTCAATCAAATGCTTGACTCCTTGAGACTTAGAGAACTTGAGATAAAGTCTGAAAGGAAAGATAATGAAGTCTTGTTTGTTAGAGATAAGCAAAAGCATAACAAAAATAGAAATTCCTATAACAAGAATATTGGAAACCAAGCTTCAGGAAACCAAACCTACAGAAATAATAATCAAAATCAACACCACAATTCTAACCAAAACAGAGGCCAGAAGAGTTTCTGGAGAGACAATAGGAACTCGAATAAATCCTATCAACCTGCAAGAACTAATGAATCAACACAAATAAGTTGTAACTACTGTCACAAAGAAGGGCATTAA
mRNA sequence
ATGTCTGCGAAAGTGGAATTGGAGAAATTCGACTGGAAGGGTGACTTCGGGCTATGGAGGAGAAAGATGAAAGCTCTTCTAGTCCAACAGAAGGTTGCTAACTTCTTGAACCAGGAACATTTCTTCACCTATAAAATGGATTCGAACAAAAACCTTGAGGAAAATCTTGATGATTTTAATACAACTTGTACTGAATTAGCTAATGCCGGTGAAGAAATAAAATCTCAAGATCATGTTGTAATCCTCTTAAAGTCTTTGCTCGAATCTTATAAAGAAGTAAAAGTCGCTATAAAGTATGGTAGAGACAAATTGACACTCAATCAAATGCTTGACTCCTTGAGACTTAGAGAACTTGAGATAAAGTCTGAAAGGAAAGATAATGAAGTCTTGTTTGTTAGAGATAAGCAAAAGCATAACAAAAATAGAAATTCCTATAACAAGAATATTGGAAACCAAGCTTCAGGAAACCAAACCTACAGAAATAATAATCAAAATCAACACCACAATTCTAACCAAAACAGAGGCCAGAAGAGTTTCTGGAGAGACAATAGGAACTCGAATAAATCCTATCAACCTGCAAGAACTAATGAATCAACACAAATAAGTTGTAACTACTGTCACAAAGAAGGGCATTAA
Coding sequence (CDS)
ATGTCTGCGAAAGTGGAATTGGAGAAATTCGACTGGAAGGGTGACTTCGGGCTATGGAGGAGAAAGATGAAAGCTCTTCTAGTCCAACAGAAGGTTGCTAACTTCTTGAACCAGGAACATTTCTTCACCTATAAAATGGATTCGAACAAAAACCTTGAGGAAAATCTTGATGATTTTAATACAACTTGTACTGAATTAGCTAATGCCGGTGAAGAAATAAAATCTCAAGATCATGTTGTAATCCTCTTAAAGTCTTTGCTCGAATCTTATAAAGAAGTAAAAGTCGCTATAAAGTATGGTAGAGACAAATTGACACTCAATCAAATGCTTGACTCCTTGAGACTTAGAGAACTTGAGATAAAGTCTGAAAGGAAAGATAATGAAGTCTTGTTTGTTAGAGATAAGCAAAAGCATAACAAAAATAGAAATTCCTATAACAAGAATATTGGAAACCAAGCTTCAGGAAACCAAACCTACAGAAATAATAATCAAAATCAACACCACAATTCTAACCAAAACAGAGGCCAGAAGAGTTTCTGGAGAGACAATAGGAACTCGAATAAATCCTATCAACCTGCAAGAACTAATGAATCAACACAAATAAGTTGTAACTACTGTCACAAAGAAGGGCATTAA
Protein sequence
MSAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEHFFTYKMDSNKNLEENLDDFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRELEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQKSFWRDNRNSNKSYQPARTNESTQISCNYCHKEGH
Homology
BLAST of Lag0028601 vs. NCBI nr
Match:
KAA0067607.1 (retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] >TYJ97155.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa])
HSP 1 Score: 118.2 bits (295), Expect = 8.3e-23
Identity = 77/213 (36.15%), Postives = 108/213 (50.70%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFL------------------------- 61
S + E+ KF+ GDF +WR+K++ +LVQ KVA L
Sbjct: 3 STRFEMSKFNGNGDFAIWRKKIRVILVQHKVAKILDEEKLPENITESEKRDMDEMTYSTI 62
Query: 62 -----------------------------------NQEHFFTYKMDSNKNLEENLDDFNT 121
N+E FF YKMD +K+LEENLD+F
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKFLPNKEKFFRYKMDQSKSLEENLDEFQK 122
Query: 122 TCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRELEIK 151
+L+N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R LEIK
Sbjct: 123 IIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIK 182
BLAST of Lag0028601 vs. NCBI nr
Match:
TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 114.8 bits (286), Expect = 9.2e-22
Identity = 85/274 (31.02%), Postives = 116/274 (42.34%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K+LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. NCBI nr
Match:
KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 114.8 bits (286), Expect = 9.2e-22
Identity = 85/274 (31.02%), Postives = 116/274 (42.34%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K+LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. NCBI nr
Match:
TXG70425.1 (hypothetical protein EZV62_005360 [Acer yangbiense])
HSP 1 Score: 110.5 bits (275), Expect = 1.7e-20
Identity = 68/176 (38.64%), Postives = 103/176 (58.52%), Query Frame = 0
Query: 1 MSAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQE--------------------- 60
+S K E+EKF+ KGDF +WR+KMKA+LVQQK A L +E
Sbjct: 2 VSTKFEIEKFNGKGDFRMWRKKMKAILVQQKCAKSLEEEKDLPVSLSAEEKQDLLETAYN 61
Query: 61 --------HFFTYKMDSNKNLEENLDDFNTTCTELAN--AGEEIKSQDHVVILLKSLLES 120
+ F +KMD +K+LE+NLDDF ELAN + E + ++ VI+L L +S
Sbjct: 62 TIILNLADNLFGFKMDQSKSLEDNLDDFTKLNIELANCDSKEALSDENQAVIVLNFLSDS 121
Query: 121 YKEVKVAIKYGRDKLTLNQMLDSLRLRELEIKSERKDNEVLFVRDKQKHNKNRNSY 146
YK++K AIKYGRD L++ +L +LR RE+E++SE++ + + + ++ K N+Y
Sbjct: 122 YKDLKAAIKYGRDSLSIEDVLGALRSREMEMRSEKRASIGEGLNVRGRYEKKGNNY 177
BLAST of Lag0028601 vs. NCBI nr
Match:
KAA0047995.1 (retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa])
HSP 1 Score: 110.2 bits (274), Expect = 2.3e-20
Identity = 84/274 (30.66%), Postives = 114/274 (41.61%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYG D LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. ExPASy TrEMBL
Match:
A0A5A7VKC2 (Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold174G00310 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 4.0e-23
Identity = 77/213 (36.15%), Postives = 108/213 (50.70%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFL------------------------- 61
S + E+ KF+ GDF +WR+K++ +LVQ KVA L
Sbjct: 3 STRFEMSKFNGNGDFAIWRKKIRVILVQHKVAKILDEEKLPENITESEKRDMDEMTYSTI 62
Query: 62 -----------------------------------NQEHFFTYKMDSNKNLEENLDDFNT 121
N+E FF YKMD +K+LEENLD+F
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKFLPNKEKFFRYKMDQSKSLEENLDEFQK 122
Query: 122 TCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRELEIK 151
+L+N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R LEIK
Sbjct: 123 IIVDLSNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRNLEIK 182
BLAST of Lag0028601 vs. ExPASy TrEMBL
Match:
A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 85/274 (31.02%), Postives = 116/274 (42.34%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K+LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. ExPASy TrEMBL
Match:
A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)
HSP 1 Score: 114.8 bits (286), Expect = 4.5e-22
Identity = 85/274 (31.02%), Postives = 116/274 (42.34%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFSLWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYSTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K+LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYGRD LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. ExPASy TrEMBL
Match:
A0A5A7U2U7 (Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00590 PE=4 SV=1)
HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 84/274 (30.66%), Postives = 114/274 (41.61%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQEH--------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++E
Sbjct: 3 STRFEVSKFNGHGDFALWRKKIRAILVQHKVAKILDEERLPDNITESEKRDMDEMAYWTI 62
Query: 62 -------------------------------------------FFTYKMDSNKNLEENLD 121
FF YKMD +K LEENLD
Sbjct: 63 LLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKILEENLD 122
Query: 122 DFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLRE 181
+F +L N GE++ ++ VILL SL E+Y+EVK AIKYG D LT++ +LD+L+ R
Sbjct: 123 EFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGWDSLTMSIVLDALKTRN 182
Query: 182 LEIKSERKDNEVLFVRDKQKHNKNRNSYNKNIGNQASGNQTYRNNNQNQHHNSNQNRGQK 212
LEIK ERKD E+L R R +K
Sbjct: 183 LEIKKERKDGELLMAR---------------------------------------GRSEK 232
BLAST of Lag0028601 vs. ExPASy TrEMBL
Match:
A0A5D3BRB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2454G00070 PE=4 SV=1)
HSP 1 Score: 109.0 bits (271), Expect = 2.5e-20
Identity = 75/220 (34.09%), Postives = 105/220 (47.73%), Query Frame = 0
Query: 2 SAKVELEKFDWKGDFGLWRRKMKALLVQQKVANFLNQ----------------------- 61
S + E+ KF+ GDF LWR+K++A+LVQ KVA L++
Sbjct: 3 STRFEVSKFNVNGDFALWRKKIRAILVQHKVAKILDEGRLPANITENEKRDMDEMAYSTI 62
Query: 62 ------------------------------------------EHFFTYKMDSNKNLEENL 121
E FF YKMD +K+LEENL
Sbjct: 63 LMYLSVEVLRLVDETTTTTAELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122
Query: 122 DDFNTTCTELANAGEEIKSQDHVVILLKSLLESYKEVKVAIKYGRDKLTLNQMLDSLRLR 154
++F +L N GE++ ++ +ILL SL E+Y+EVK AIKYGRD LT++ + D+L+ R
Sbjct: 123 NEFQKIVVDLNNIGEKMSDENQAIILLNSLPETYREVKAAIKYGRDSLTMSIVFDALKTR 182
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0067607.1 | 8.3e-23 | 36.15 | retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]... | [more] |
TYK25306.1 | 9.2e-22 | 31.02 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
KAA0050719.1 | 9.2e-22 | 31.02 | putative gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
TXG70425.1 | 1.7e-20 | 38.64 | hypothetical protein EZV62_005360 [Acer yangbiense] | [more] |
KAA0047995.1 | 2.3e-20 | 30.66 | retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VKC2 | 4.0e-23 | 36.15 | Retrotransposon protein, putative, Ty1-copia subclass OS=Cucumis melo var. makuw... | [more] |
A0A5D3DNU1 | 4.5e-22 | 31.02 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... | [more] |
A0A5A7UB25 | 4.5e-22 | 31.02 | Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... | [more] |
A0A5A7U2U7 | 1.1e-20 | 30.66 | Retrotransposon protein, putative, Ty1-copia sub-class OS=Cucumis melo var. maku... | [more] |
A0A5D3BRB2 | 2.5e-20 | 34.09 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |