Lag0028589 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028589
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	protein CROWDED NUCLEI 3
Location	chr8: 25884408 .. 25884749 (-)
RNA-Seq Expression	Lag0028589
Synteny	Lag0028589

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACGCCTCAGAGGAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAGCAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGCTTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGTTAGCAATTATCTTCGAGTCTTACTCGTTTTCTATCATTAG

mRNA sequence

ATGTTCACGCCTCAGAGGAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAGCAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGCTTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGTTAGCAATTATCTTCGAGTCTTACTCGTTTTCTATCATTAG

Coding sequence (CDS)

ATGTTCACGCCTCAGAGGAAGGGGTGGCCTGCTGTGTCCCTCACGCCTCGAAGCGAAGCAAAAGTTGCAGTTTCCAATTCCATTGTTGTGGGGAAAGGAAAGGCTGTGGCTTTTACAGACGGCCCTCCGCCGCCGTTGGGCTCTCTGAACGACGGATTGCATAAAACTGCGGCGGCTGTGGATACTGGGGACATGGACGATTGGAGGAAGTTTAAGAAGGCGGGGTTGTTGGATGCGGCCGTAATGGAGCGCAAAGATCGGGAGGCACTTCTCGAGAAGGCTTCAAGGCTTCAAAGCGAGGTTAGCAATTATCTTCGAGTCTTACTCGTTTTCTATCATTAG

Protein sequence

MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNYLRVLLVFYH

Homology

[Close]

BLAST of Lag0028589 vs. NCBI nr
Match: XP_004147138.1 (protein CROWDED NUCLEI 3 [Cucumis sativus] >KAE8648619.1 hypothetical protein Csa_008601 [Cucumis sativus])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAV 60
           MFTPQR GWPA SLTPR+E K+A++NSI++GKGK V FTD PPPPLGSLND L+KTA AV
Sbjct: 1   MFTPQRTGWPAASLTPRTEPKLALTNSIILGKGKDVTFTDDPPPPLGSLNDELYKTATAV 60

Query: 61  DTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
           DTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE+ +Y
Sbjct: 61  DTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELLDY 104

[Close]

BLAST of Lag0028589 vs. NCBI nr
Match: XP_008467201.1 (PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 86/104 (82.69%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAV 60
           MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AV
Sbjct: 1   MFTPQRTGWPAASLTPRTEPKLALSNSILLGKGKDVIFTDDPPPPLGSLNDELYKTATAV 60

Query: 61  DTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
           DTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSE+ +Y
Sbjct: 61  DTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSELFDY 104

[Close]

BLAST of Lag0028589 vs. NCBI nr
Match: TYK00277.1 (protein CROWDED NUCLEI 3 [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 87/109 (79.82%), Postives = 96/109 (88.07%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKTAAAV 60
           MFTPQR GWPA SLTPR+E K+A+SNSI++GKGK V FTD PPPPLGSLND L+KTA AV
Sbjct: 1   MFTPQRTGWPAASLTPRTEPKLALSNSILLGKGKDVIFTDDPPPPLGSLNDELYKTATAV 60

Query: 61  DTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNYLRVLL 110
           DTGDMDDWRKFKKAGLLDAA MERKDREALLEKASRLQSEV  ++  L+
Sbjct: 61  DTGDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQSEVXFFVFSLI 109

[Close]

BLAST of Lag0028589 vs. NCBI nr
Match: XP_022158849.1 (protein CROWDED NUCLEI 1-like isoform X2 [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 5.3e-40
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHK 60
           MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH 
Sbjct: 1   MFTPQRKGWPAVSLTPRSEAKFAVSNSILVGKGKGKGYKDVALTDAPPPSLGSLTDGLHT 60

Query: 61  TAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
           TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKASRLQ+E+ +Y
Sbjct: 61  TAAAVDTEDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQTELFDY 109

[Close]

BLAST of Lag0028589 vs. NCBI nr
Match: XP_022158848.1 (protein CROWDED NUCLEI 1-like isoform X1 [Momordica charantia])

HSP 1 Score: 174.5 bits (441), Expect = 5.3e-40
Identity = 90/109 (82.57%), Postives = 94/109 (86.24%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKA-----VAFTDGPPPPLGSLNDGLHK 60
           MFTPQRKGWPAVSLTPRSEAK AVSNSI+VGKGK      VA TD PPP LGSL DGLH 
Sbjct: 1   MFTPQRKGWPAVSLTPRSEAKFAVSNSILVGKGKGKGYKDVALTDAPPPSLGSLTDGLHT 60

Query: 61  TAAAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
           TAAAVDT DMDDWRKFKKAGLLDAA MERKDREALLEKASRLQ+E+ +Y
Sbjct: 61  TAAAVDTEDMDDWRKFKKAGLLDAAAMERKDREALLEKASRLQTELFDY 109

[Close]

BLAST of Lag0028589 vs. ExPASy Swiss-Prot
Match: Q9SAF6 (Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 9.7e-13
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 0


Query: 14  LTPRSEA-KV-AVSNSIVVG-KGKAVAFTDG------PPPPLGSLNDGLHKTAAAVDTGD 73
           +TPRSE  K+  V+N      KGKAVAF+D       PPPP+G+L  G   +    D  D
Sbjct: 1   MTPRSETHKIGGVTNPRNADRKGKAVAFSDDLVIPTLPPPPIGTLT-GQGVSRGHTDDMD 60

Query: 74  MDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
           M DWR+F++ GLL+ A ME+KD+EALLEK S L+ E+  Y
Sbjct: 61  MGDWRRFREVGLLNEASMEKKDQEALLEKISTLEKELYGY 99

[Close]

BLAST of Lag0028589 vs. ExPASy Swiss-Prot
Match: Q9CA42 (Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-10
Identity = 42/107 (39.25%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLTPRSEAKVAVSNSIVVGKGKAVAFTD---GPPPPLGSLNDGLHKTA 60
           MFTPQR  WP                     KGKA+AF+D    PPP    L +      
Sbjct: 1   MFTPQRNRWPETD-----------------RKGKAIAFSDEIITPPPQRVLLRED----- 60

Query: 61  AAVDTGDMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
                   DDW+KFK+ GLLD A +ERKDR+AL+EK  +L+ E+ +Y
Sbjct: 61  --------DDWQKFKEVGLLDEASLERKDRDALIEKILKLEKELFDY 77

[Close]

BLAST of Lag0028589 vs. ExPASy Swiss-Prot
Match: I0J0E7 (Nuclear matrix constituent protein 1 OS=Allium cepa OX=4679 GN=NMCP1 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-07
Identity = 39/110 (35.45%), Postives = 53/110 (48.18%), Query Frame = 0


Query: 1   MFTPQRKGWPAVSLT----PRSEAKVAVSNSIVVGKGKAVAFTDGPPPPLGSLNDGLHKT 60
           M TPQR  W   S      PRS+ K         G  K +     P PPLG LN G    
Sbjct: 1   MLTPQRSAWSLKSKVSSEKPRSKGK---------GITKNLDSAATPFPPLGLLNGG---- 60

Query: 61  AAAVDTG--DMDDWRKFKKAGLLDAAVMERKDREALLEKASRLQSEVSNY 105
              +D G  DM+ W++FK  GLLD ++  +KDRE+L  +   L+ ++  Y
Sbjct: 61  --DLDRGGEDMEAWKRFKDEGLLDESICYKKDRESLASRIIELEKDLHEY 95

The following BLAST results are available for this feature:

BLAST of Lag0028589 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147138.1	1.4e-40	81.73	protein CROWDED NUCLEI 3 [Cucumis sativus] >KAE8648619.1 hypothetical protein Cs...	[more]
XP_008467201.1	1.4e-40	82.69	PREDICTED: protein CROWDED NUCLEI 3 [Cucumis melo]	[more]
TYK00277.1	4.0e-40	79.82	protein CROWDED NUCLEI 3 [Cucumis melo var. makuwa]	[more]
XP_022158849.1	5.3e-40	82.57	protein CROWDED NUCLEI 1-like isoform X2 [Momordica charantia]	[more]
XP_022158848.1	5.3e-40	82.57	protein CROWDED NUCLEI 1-like isoform X1 [Momordica charantia]	[more]

BLAST of Lag0028589 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SAF6	9.7e-13	48.00	Protein CROWDED NUCLEI 2 OS=Arabidopsis thaliana OX=3702 GN=CRWN2 PE=1 SV=1	[more]
Q9CA42	3.5e-10	39.25	Protein CROWDED NUCLEI 3 OS=Arabidopsis thaliana OX=3702 GN=CRWN3 PE=1 SV=1	[more]
I0J0E7	6.1e-07	35.45	Nuclear matrix constituent protein 1 OS=Allium cepa OX=4679 GN=NMCP1 PE=2 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 87..107
None	No IPR available	PANTHER	PTHR31908:SF9	PROTEIN CROWDED NUCLEI 3	coord: 1..104
IPR040418	Protein crowded nuclei	PANTHER	PTHR31908	PROTEIN CROWDED NUCLEI 4	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028589.1	Lag0028589.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006997	nucleus organization
cellular_component	GO:0005652	nuclear lamina
cellular_component	GO:0005634	nucleus