Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCGAATTGTTTCTCATCCAATTGGAAATTCACAACTTCATGTGAATCATTTACGATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGTTAACTTGTTCGATGTTGTTAAAATTTCTGAATTGGCTTCTGGGTTGAATATTTACTATTCCAAGAGTGAGGTTTTGGGAATTCATTTAGAGGATTCGGAATTGGAATGGTTGACAACAACGTTTGGCTGTAAACAAGGGATTTGGCCTTCCACCCACCTTGGTTTGCCTTTCGGGAGGCAATGCAAAAACTATATTTTTTGGCAGCAAGTGATTGAAAGAATCCATCATAAACTTCATAGTTGGAAATATTCATATATCTCAAAAGGTGGTCGACATACTCTTACTCAAGCAGTTCTCTCTAGTATGCCAATTTATTATTTATCCTTATTCAAATTGTCGAGTAAGGTTGCAAGATCTCTTGATAAGCTGCTCCGTGATTTCTTCTGGGAATGATCTAGAGGTGATGGTGGTATGCATAATATTAATTGGGCAACAGTACAACTTCCACATTTGTTGGGGGTATAAGTATTGGTAATTTTCAGAATCGCAATCTTGCTCTTCTAGCAAAGTGGATTTGGAGATTTTTACATGAGGAAAACACTCTATGGCATAAACGGATTGTTGTTAAGTATTATAAATCTGATTTGATTAGTCTTTGGCCTAGCAGTATTCAGAGAAGTTCTCACAAATCTCCTTGGAGATTCATTTCTTCTACTATTGACCTTGTATCTTCCCGTATTAAAAGAAGTTTGGGTAATGGTCTTGCTACTTCATTCTGGCATAATTGTGGTTAAGTTGTGGTATTCCGGCTACAAATTTTCCTCGTTTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGAGTCTTCGGCGTAATTTAAATGATTTGGAGATAGAAGAATGGATGAAATTATCTCTTATTCTTTCCTCCGTCAGATTACAGAACCGTAATGATTCCTGGTTATGGCCTTTAGAGTCGTCCAATATTTTCTCTATTAAATCACTTATGGAGGACCTAGTTGAATATCCGATTATGGCAAATGATCTCTATAGGGTAATTTGGACCGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGATGCTATTACTACAGTTGATAGACTTCAACGACAGATGCCTCAATTTCATTTGTCTCCATCATGGTGCATAATGTGTGCTGCTAGTTCAAAACATTCTGGGCACCTATTTGTTCATTGTACCTTCGCTTCTAGATATTGGTCAGAGATTCTTGATGCTTTCGGATGGTCCATTGCTTTTCCAAATTGCATTAAGGATGTTCTTACTCTCATTTTTGTGGGTCATCCCTTTCATGGAGAAAAGAAGAACCAGTGGCTTGCTTTGAACAGAGTCTGCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTCATGGATCTAATTCTCTTTCATGTTTTATACTGGTGTAAATGTCAACACCCTTTCTTTGATTATAGTTTATCTTTTTTGATTTCCAATTGGAAAGCTTTCATGTAA
mRNA sequence
ATGGGTCGAATTGTTTCTCATCCAATTGGAAATTCACAACTTCATGTGAATCATTTACGATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGTTAACTTGTTCGATGTTGTTAAAATTTCTGAATTGGCTTCTGGGTTGAATATTTACTATTCCAAGAGTGAGGTTTTGGGAATTCATTTAGAGGATTCGGAATTGGAATGTTGTGGTATTCCGGCTACAAATTTTCCTCGTTTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGAGTCTTCGGCGTAATTTAAATGATTTGGAGATAGAAGAATGGATGAAATTATCTCTTATTCTTTCCTCCGTCAGATTACAGAACCGTAATGATTCCTGGTTATGGCCTTTAGAGTCGTCCAATATTTTCTCTATTAAATCACTTATGGAGGACCTAGTTGAATATCCGATTATGGCAAATGATCTCTATAGGGTAATTTGGACCGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGATGCTATTACTACAGTTGATAGACTTCAACGACAGATGCCTCAATTTCATTTGTCTCCATCATGGTGCATAATGTGTGCTGCTAGTTCAAAACATTCTGGGCACCTATTTGTTCATTGTACCTTCGCTTCTAGATATTGGTCAGAGATTCTTGATGCTTTCGGATGGTCCATTGCTTTTCCAAATTGCATTAAGGATGTTCTTACTCTCATTTTTGTGGGTCATCCCTTTCATGGAGAAAAGAAGAACCAGTGGCTTGCTTTGAACAGAGTCTGCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTCATGGATCTAATTCTCTTTCATGTTTTATACTGGTGTAAATGTCAACACCCTTTCTTTGATTATAGTTTATCTTTTTTGATTTCCAATTGGAAAGCTTTCATGTAA
Coding sequence (CDS)
ATGGGTCGAATTGTTTCTCATCCAATTGGAAATTCACAACTTCATGTGAATCATTTACGATTCGCTGATGATACTTTATTATTCTCCATCTTTTGTAAGGATGCATTGGTTAACTTGTTCGATGTTGTTAAAATTTCTGAATTGGCTTCTGGGTTGAATATTTACTATTCCAAGAGTGAGGTTTTGGGAATTCATTTAGAGGATTCGGAATTGGAATGTTGTGGTATTCCGGCTACAAATTTTCCTCGTTTTTATCGTTTAACTGATCGTCCGAGGAGTTTGGTTGGTGAGACATGGATTGCTTCTCAATCAGCATGGGACCTGAGTCTTCGGCGTAATTTAAATGATTTGGAGATAGAAGAATGGATGAAATTATCTCTTATTCTTTCCTCCGTCAGATTACAGAACCGTAATGATTCCTGGTTATGGCCTTTAGAGTCGTCCAATATTTTCTCTATTAAATCACTTATGGAGGACCTAGTTGAATATCCGATTATGGCAAATGATCTCTATAGGGTAATTTGGACCGATTTCTATCCAAAGAAGATCAAGATTTTTCTATGGGAGCTTAGTCATGATGCTATTACTACAGTTGATAGACTTCAACGACAGATGCCTCAATTTCATTTGTCTCCATCATGGTGCATAATGTGTGCTGCTAGTTCAAAACATTCTGGGCACCTATTTGTTCATTGTACCTTCGCTTCTAGATATTGGTCAGAGATTCTTGATGCTTTCGGATGGTCCATTGCTTTTCCAAATTGCATTAAGGATGTTCTTACTCTCATTTTTGTGGGTCATCCCTTTCATGGAGAAAAGAAGAACCAGTGGCTTGCTTTGAACAGAGTCTGCTTTTGGTTTTTATGGGGCGAACGAAATTCACGAATTTTCAGGGATTCTTTCTCTTCCTTTGATAAATTCATGGATCTAATTCTCTTTCATGTTTTATACTGGTGTAAATGTCAACACCCTTTCTTTGATTATAGTTTATCTTTTTTGATTTCCAATTGGAAAGCTTTCATGTAA
Protein sequence
MGRIVSHPIGNSQLHVNHLRFADDTLLFSIFCKDALVNLFDVVKISELASGLNIYYSKSEVLGIHLEDSELECCGIPATNFPRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM
Homology
BLAST of Lag0028588 vs. NCBI nr
Match:
RVW99869.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])
HSP 1 Score: 152.1 bits (383), Expect = 8.4e-33
Identity = 105/376 (27.93%), Postives = 168/376 (44.68%), Query Frame = 0
Query: 9 IGNSQLHVNHLRFADDTLLFSIFCKDALVNLFDVVKISELASGLNIYYSKSEVLGIHLED 68
+G ++ V+HL+FADDT+ FS ++ L L ++ SGL + KS + GI+L+
Sbjct: 944 VGRNRTRVSHLQFADDTIFFSNTREEDLQTLKSLLLAFGHISGLKVNLDKSNIYGINLDQ 1003
Query: 69 SEL----ECCGIPATNFPRFY---RLTDRP-----------RSLVGETWIASQ------- 128
+ + E A+ +P Y L P R +VG+ + SQ
Sbjct: 1004 AHISRLAETLECKASGWPILYLGLPLAGTPGQEMGKEFVLGRFVVGDQPLGSQYPSLFRV 1063
Query: 129 -----------------SAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPL 188
+W+L+ RRNL+D EIE+ L L V L + D+ LWPL
Sbjct: 1064 VLDKNIPISSVLGPTRPFSWNLNFRRNLSDSEIEDLEGLMRSLDGVHLSPSVPDARLWPL 1123
Query: 189 ESSNIFSIKSLMEDLVEYPIMANDLY--RVIWTDFYPKKIKIFLWELSHDAITTVDRLQR 248
SS +FS+KS L ++ + ++ + +W P K++ F+W ++H + T D LQ
Sbjct: 1124 SSSGLFSVKSFFLALSQF-FGSPQVFPSKFVWNSQIPFKVQSFIWLVAHKKVNTNDMLQV 1183
Query: 249 QMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLI 308
+ P LSP CI+C + + H+F+HC+ W + P I D++ +
Sbjct: 1184 RRPYKALSPDICILCMKHGESADHIFLHCSLTIGLWHRLFQLAKMDWVPPRSILDMMYIK 1243
Query: 309 FVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQH 340
F G W A N +W ERN+RIF D + + D I+F W C
Sbjct: 1244 FNGFGSSKRGIALWQAANIALIRIVWRERNARIFEDKARNSESLWDSIVFLASLWAYCSK 1303
BLAST of Lag0028588 vs. NCBI nr
Match:
RVX02903.1 (Actin-related protein 7 [Vitis vinifera])
HSP 1 Score: 150.2 bits (378), Expect = 3.2e-32
Identity = 83/236 (35.17%), Postives = 117/236 (49.58%), Query Frame = 0
Query: 105 AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKS--LMEDLV 164
AW+L+ RRNL D EI+ +L LSSVR + DS W L SS++FS+KS L V
Sbjct: 473 AWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSDLFSVKSFFLASSKV 532
Query: 165 EYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAAS 224
PI+ + +W+ P K+K W ++H + T D+LQ + P L P WCI+C +
Sbjct: 533 SNPILFLPA-KFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGN 592
Query: 225 SKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALN 284
+ HLF+HC W+++ G P +D+L + F G K W
Sbjct: 593 GESIDHLFLHCPVTIGLWNKLFKLVGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVAC 652
Query: 285 RVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW 338
W +W ERN+RIF+D S + DLILF+ W C F L+ L NW
Sbjct: 653 LTLVWIVWQERNNRIFKDKGRSEETLWDLILFYSSLWASCSAAFRGVPLNVLQLNW 707
BLAST of Lag0028588 vs. NCBI nr
Match:
CAN70431.1 (hypothetical protein VITISV_030910 [Vitis vinifera])
HSP 1 Score: 147.9 bits (372), Expect = 1.6e-31
Identity = 83/236 (35.17%), Postives = 115/236 (48.73%), Query Frame = 0
Query: 105 AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--V 164
AW+L+ RRNL D EI+ +L LSSVR + DS W L SS +F++KS L V
Sbjct: 637 AWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKV 696
Query: 165 EYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAAS 224
PI+ + +W+ P K+K W ++H + T D+LQ + P L P WCI+C A+
Sbjct: 697 SNPILFLPA-KFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKALCPQWCILCKAN 756
Query: 225 SKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALN 284
+ HLF+HC W+++ G P +D+L + F G K W
Sbjct: 757 GESIDHLFLHCPVTIGLWNKLFKMAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVAC 816
Query: 285 RVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW 338
W +W ERN RIF D S + DLILF+ W C F L+ L NW
Sbjct: 817 LTLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTLWASCSAAFRGVPLNVLQLNW 871
BLAST of Lag0028588 vs. NCBI nr
Match:
BBN69274.1 (TatD related DNase [Prunus dulcis])
HSP 1 Score: 147.1 bits (370), Expect = 2.7e-31
Identity = 91/276 (32.97%), Postives = 132/276 (47.83%), Query Frame = 0
Query: 75 GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILS 134
GI FPR Y L+ R + W A+ WD RRNL++ EI E + L IL
Sbjct: 704 GILKDLFPRLYSLSRRKNQCI--AWFANNHEMPLNWDFDFRRNLSEAEIAEVVLLLDILG 763
Query: 135 SVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWE 194
+VRL +R D W +E FS KS L+ + YR IW P KI+ F+W
Sbjct: 764 NVRLFGSRPDRRSWEIEEQGSFSCKSFRSFLISTTSVVFPPYRSIWKAKTPPKIQFFVWL 823
Query: 195 LSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWS 254
++ I T D +QR+ P+ LSPSWC+ C ++++ HLF+HC+++ + W +LDA G
Sbjct: 824 AANGRINTCDCIQRRQPKMCLSPSWCVFCKENAENIDHLFIHCSYSLKLWWRMLDALGAE 883
Query: 255 IAFPNCIKDVLTLIFVGHPFHGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFD 314
P K L+ + G+ K + L FW +W ERN RIF+ S +
Sbjct: 884 WVIP---KGCFELLSINLRISGKGKKAGILRDCLIHAIFWNIWMERNRRIFQGHSGVRVE 943
Query: 315 KFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM 342
+ D I F W F DY S ++ + A +
Sbjct: 944 ELWDRIKFWASLWASVSGQFKDYHYSTIMRDMMAVL 974
BLAST of Lag0028588 vs. NCBI nr
Match:
RVW15777.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])
HSP 1 Score: 146.7 bits (369), Expect = 3.5e-31
Identity = 82/236 (34.75%), Postives = 114/236 (48.31%), Query Frame = 0
Query: 105 AWDLSLRRNLNDLEIEEWMKLSLILSSVRLQ-NRNDSWLWPLESSNIFSIKSLMEDL--V 164
AW+L+ RRNL D EI+ +L LSSVR + DS W L SS +F++KS L V
Sbjct: 593 AWNLNFRRNLTDSEIDLLQRLMSSLSSVRFSPSLADSRAWSLSSSGLFTVKSFFLALSKV 652
Query: 165 EYPIMANDLYRVIWTDFYPKKIKIFLWELSHDAITTVDRLQRQMPQFHLSPSWCIMCAAS 224
PI+ + +W+ P K+K W ++H + T D+LQ + P L P WCI+C +
Sbjct: 653 SNPILFLPA-KFLWSSKVPSKVKALAWIVAHGKVNTNDKLQLRRPYKSLCPQWCILCKGN 712
Query: 225 SKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIKDVLTLIFVGHPFHGEKKNQWLALN 284
+ HLF+HC W+++ G P +D+L + F G K W
Sbjct: 713 GESIDHLFLHCPVTIGLWNKLFKLAGLDWVPPRSFEDMLVIAFKGLGNSLRGKTLWQVAC 772
Query: 285 RVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLYWCKCQHPFFDYSLSFLISNW 338
W +W ERN RIF D S + DLILF+ W C F L+ L NW
Sbjct: 773 LTLVWIVWQERNKRIFEDKGRSEETLWDLILFYSTLWASCSAAFRGVPLNVLQLNW 827
BLAST of Lag0028588 vs. ExPASy TrEMBL
Match:
A0A5H2XQW2 (TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1)
HSP 1 Score: 147.1 bits (370), Expect = 1.3e-31
Identity = 91/276 (32.97%), Postives = 132/276 (47.83%), Query Frame = 0
Query: 75 GIPATNFPRFYRLTDRPRSLVGETWIASQSA----WDLSLRRNLNDLEIEEWMKLSLILS 134
GI FPR Y L+ R + W A+ WD RRNL++ EI E + L IL
Sbjct: 704 GILKDLFPRLYSLSRRKNQCI--AWFANNHEMPLNWDFDFRRNLSEAEIAEVVLLLDILG 763
Query: 135 SVRL-QNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWE 194
+VRL +R D W +E FS KS L+ + YR IW P KI+ F+W
Sbjct: 764 NVRLFGSRPDRRSWEIEEQGSFSCKSFRSFLISTTSVVFPPYRSIWKAKTPPKIQFFVWL 823
Query: 195 LSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWS 254
++ I T D +QR+ P+ LSPSWC+ C ++++ HLF+HC+++ + W +LDA G
Sbjct: 824 AANGRINTCDCIQRRQPKMCLSPSWCVFCKENAENIDHLFIHCSYSLKLWWRMLDALGAE 883
Query: 255 IAFPNCIKDVLTLIFVGHPFHGEKKNQWL---ALNRVCFWFLWGERNSRIFR-DSFSSFD 314
P K L+ + G+ K + L FW +W ERN RIF+ S +
Sbjct: 884 WVIP---KGCFELLSINLRISGKGKKAGILRDCLIHAIFWNIWMERNRRIFQGHSGVRVE 943
Query: 315 KFMDLILFHVLYWCKCQHPFFDYSLSFLISNWKAFM 342
+ D I F W F DY S ++ + A +
Sbjct: 944 ELWDRIKFWASLWASVSGQFKDYHYSTIMRDMMAVL 974
BLAST of Lag0028588 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 143.3 bits (360), Expect = 1.9e-30
Identity = 81/264 (30.68%), Postives = 124/264 (46.97%), Query Frame = 0
Query: 82 PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSW 141
PR + L+ + V E W S + W L + R L D E W + L + +
Sbjct: 883 PRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKP 942
Query: 142 LWPLESSNIFSIKSLMEDLVEYPIM-AN---DLYRVIWTDFYPKKIKIFLWELSHDAITT 201
LW L S+NIF S+ + E PI AN +LY+ +W +PKK K F+W L H I T
Sbjct: 943 LWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINT 1002
Query: 202 VDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIK 261
DRLQ+++P + LSP+WC MC S + HLF+HC ++ + WS+ W+ + P ++
Sbjct: 1003 ADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWN-STPTDVQ 1062
Query: 262 DVLTLIFVGHPFHGEKKNQWLALNRVCFWFLWGERNSRIFRDSFSSFDKFMDLILFHVLY 321
++ I +K N W +W ERN+RIF+ + + L +
Sbjct: 1063 SLIQNI-CSLNIRNQKGLITFNTNATILWKIWLERNNRIFKQQEKAPQDLWEDTLAQIGL 1122
Query: 322 WCKCQHPFFDYSLSFLISNWKAFM 342
W F +Y + N AF+
Sbjct: 1123 WSCKSKLFSNYDCCSIALNISAFV 1144
BLAST of Lag0028588 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 80/266 (30.08%), Postives = 124/266 (46.62%), Query Frame = 0
Query: 82 PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSW 141
PR + L+ + V + W S W++ + R L D E W + L +
Sbjct: 775 PRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP 834
Query: 142 LWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTDFYPKKIKIFLWELSHDAITT 201
LW L S+NIF S+ +DL E + LY+ +W +PKK K F+W L H I T
Sbjct: 835 LWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINT 894
Query: 202 VDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIK 261
DRLQ+++P + LSP+WC MC S + HLF+HC ++ + WS+ W+ + PN +K
Sbjct: 895 ADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVK 954
Query: 262 DVLTLIFVGHPFHGEKKNQWLALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHV 321
+ I + + + + N + W +W ERN+RIF+ F + IL
Sbjct: 955 SLAQNIC---SLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQT 1014
Query: 322 LYWCKCQHPFFDYSLSFLISNWKAFM 342
W F +Y + N AF+
Sbjct: 1015 GLWSCKSKLFSNYDCCSIALNISAFV 1036
BLAST of Lag0028588 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 80/266 (30.08%), Postives = 124/266 (46.62%), Query Frame = 0
Query: 82 PRFYRLTDRPRSLVGETWIASQSAWDLSLRRNLNDLEIEEWMKLSLILSSVRLQNRNDSW 141
PR + L+ + V + W S W++ + R L D E W + L +
Sbjct: 681 PRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKP 740
Query: 142 LWPLESSNIFSIKSLMEDLVEYPIMAND----LYRVIWTDFYPKKIKIFLWELSHDAITT 201
LW L S+NIF S+ +DL E + LY+ +W +PKK K F+W L H I T
Sbjct: 741 LWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINT 800
Query: 202 VDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWSIAFPNCIK 261
DRLQ+++P + LSP+WC MC S + HLF+HC ++ + WS+ W+ + PN +K
Sbjct: 801 ADRLQKRLPNWTLSPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVK 860
Query: 262 DVLTLIFVGHPFHGEKKNQWLALNRVC--FWFLWGERNSRIFRDSFSSFDKFMDLILFHV 321
+ I + + + + N + W +W ERN+RIF+ F + IL
Sbjct: 861 SLAQNIC---SLNIKTQKGLITFNTIAILLWKIWLERNNRIFKQQKKEFQDLWEDILAQT 920
Query: 322 LYWCKCQHPFFDYSLSFLISNWKAFM 342
W F +Y + N AF+
Sbjct: 921 GLWSCKSKLFSNYDCCSIALNISAFV 942
BLAST of Lag0028588 vs. ExPASy TrEMBL
Match:
A0A438H7H3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1050 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 1.8e-28
Identity = 75/252 (29.76%), Postives = 127/252 (50.40%), Query Frame = 0
Query: 74 CG--IPATNFPRFYRLTDRPRSLVGETWIAS--QSAWDLSLRRNLNDLEIEEWMKLSLIL 133
CG + A FP+ + L + + V E W +S Q W++ L RNLND E++ + +L +L
Sbjct: 133 CGNEVLAQTFPQLFELAVQRNASVNEMWDSSLGQGGWNIRLSRNLNDWELDAFGELMQVL 192
Query: 134 SSVRLQNRNDSWLWPLESSNIFSIKSLMEDLVEYPIMANDLYRVIWTDFYPKKIKIFLWE 193
+R D+ +W ES ++F I+ + L +++ + IW D P K+ F WE
Sbjct: 193 RDLRTSLEEDAVIWKGESHDLFRIRDAYKLLAGSNVISFP-KKGIWVDKVPTKVAFFAWE 252
Query: 194 LSHDAITTVDRLQRQMPQFHLSPSWCIMCAASSKHSGHLFVHCTFASRYWSEILDAFGWS 253
S + + T+D+LQR+ QF P+ C +C ++ H+ +HC W +L FG +
Sbjct: 253 ASWEKVLTLDKLQRRGWQF---PNRCFLCGCEEENVNHILLHCIVVRALWEIVLALFGAN 312
Query: 254 IAFPNCIKDVLTLIFVGHPFHGEKKNQ-WLALNRVCFWFLWGERNSRIFRDSFSSFDKFM 313
FP +KD+ L+ PF G K+ + W ++ FW +W ERN FR + K
Sbjct: 313 WVFPERVKDM--LVSWRGPFVGRKRKRIWTSIPLCIFWTVWKERNRLAFRGGSLAIQKLK 372
Query: 314 DLILFHVLYWCK 321
+ + ++ W +
Sbjct: 373 NYFVCNLWSWAR 378
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW99869.1 | 8.4e-33 | 27.93 | Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera] | [more] |
RVX02903.1 | 3.2e-32 | 35.17 | Actin-related protein 7 [Vitis vinifera] | [more] |
CAN70431.1 | 1.6e-31 | 35.17 | hypothetical protein VITISV_030910 [Vitis vinifera] | [more] |
BBN69274.1 | 2.7e-31 | 32.97 | TatD related DNase [Prunus dulcis] | [more] |
RVW15777.1 | 3.5e-31 | 34.75 | LINE-1 retrotransposable element ORF2 protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5H2XQW2 | 1.3e-31 | 32.97 | TatD related DNase OS=Prunus dulcis OX=3755 GN=Prudu_862S001100 PE=4 SV=1 | [more] |
A0A5A7T9I7 | 1.9e-30 | 30.68 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 2.5e-30 | 30.08 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TR15 | 2.5e-30 | 30.08 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A438H7H3 | 1.8e-28 | 29.76 | Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1050 ... | [more] |
Match Name | E-value | Identity | Description | |