Lag0028567 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0028567
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Integrase catalytic domain-containing protein
Location	chr8: 25104922 .. 25105788 (+)
RNA-Seq Expression	Lag0028567
Synteny	Lag0028567

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGCGTCTCAAACAACGCCCAATCTCTCTCAGCATTCCAACTCCTCTGGAAATTTTAATCGAGCAAGGTCATCTGGCCGTGGACGCAATCAAGGTCGTGGTCGTGGATTCAATCCAAGGTCGTGGAAATTTTAACCAAGGCAGAGGCATATTTTCTTCTCCTACATAGTCTTCTCACAAACAAGGACGAGTTTCATTTCAAATTTGTCAACGCCCTAGACATAGTGCAATTGATTGTCTTAACAGAATGAACTACCATTTCCAAGGGTGTCATCCACCTACGCAACTAGCAACCATGGTGGTCTCTCAAAATGTTGCTTACTGCAACACAACATCAAGCAGTGTGAATAATGGAGCTGGTTCCTCTTCTACTTGGTTAACCGATTCTGGTTGTAATGCTCATCTTACCGCTGATCTCAGTAATTTGTCTATTGCTTCAGAATATGCAGGTGATGATCAAGTATCAGTAGGCAGTGGCCATTCCCTCCCAATTTCTCACAATGACTCAGGTTCTCTCCATACATCTTTCTCTTCTTTCCAGCTTAATAATCTTCTATATGTTCTTCATATTGCTACCAACCTTCTGTTTGTCCATCAACTATATGTAGACAACAACTGTATTATCATATTTGACTCACACAAGTTTGTTGTTCAGGACAAATGTACGAGCAAGATTTTGTTCTAAGGACCTAGCGTAAATAGCCTCTATATCCTTTATCATCTATTCTTACATCTTCTGCTCCATCATGTCATGTTGCTCGTGTTGCTACAGATAGCTCTTATTCTCTTTGGCATAATCGATTAGGACACCCTGGTCCTTCTGTTGTTAATTATGTTTTTCGTTTCTTCGGTTTATCTTCATGA

mRNA sequence

ATGTTTGCGTCTCAAACAACGCCCAATCTCTCTCAGCATTCCAACTCCTCTGGAAATTTTAATCGAGCAAGGTCATCTGGCCGTGGACGCAATCAAGGTCGTGGTCGTGGATTCAATCCAAGAATGAACTACCATTTCCAAGGGTGTCATCCACCTACGCAACTAGCAACCATGGTGGTCTCTCAAAATGTTGCTTACTGCAACACAACATCAAGCAGTGTGAATAATGGAGCTGGTTCCTCTTCTACTTGGTTAACCGATTCTGGTTGTAATGCTCATCTTACCGCTGATCTCAGTAATTTGTCTATTGCTTCAGAATATGCAGGTGATGATCAAGTATCAGTAGGCAGTGGCCATTCCCTCCCAATTTCTCACAATGACTCAGATAGCTCTTATTCTCTTTGGCATAATCGATTAGGACACCCTGGTCCTTCTGTTGTTAATTATGTTTTTCGTTTCTTCGGTTTATCTTCATGA

Coding sequence (CDS)

ATGTTTGCGTCTCAAACAACGCCCAATCTCTCTCAGCATTCCAACTCCTCTGGAAATTTTAATCGAGCAAGGTCATCTGGCCGTGGACGCAATCAAGGTCGTGGTCGTGGATTCAATCCAAGAATGAACTACCATTTCCAAGGGTGTCATCCACCTACGCAACTAGCAACCATGGTGGTCTCTCAAAATGTTGCTTACTGCAACACAACATCAAGCAGTGTGAATAATGGAGCTGGTTCCTCTTCTACTTGGTTAACCGATTCTGGTTGTAATGCTCATCTTACCGCTGATCTCAGTAATTTGTCTATTGCTTCAGAATATGCAGGTGATGATCAAGTATCAGTAGGCAGTGGCCATTCCCTCCCAATTTCTCACAATGACTCAGATAGCTCTTATTCTCTTTGGCATAATCGATTAGGACACCCTGGTCCTTCTGTTGTTAATTATGTTTTTCGTTTCTTCGGTTTATCTTCATGA

Protein sequence

MFASQTTPNLSQHSNSSGNFNRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDSDSSYSLWHNRLGHPGPSVVNYVFRFFGLSS

Homology

[Close]

BLAST of Lag0028567 vs. NCBI nr
Match: XP_022156563.1 (uncharacterized protein LOC111023438 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-14
Identity = 68/180 (37.78%), Postives = 80/180 (44.44%), Query Frame = 0


Query: 3   ASQTTPNLSQHSNSSGNFN----RARSSGRGR-----------------NQGRGRGFNP- 62
           A   T   S H+    NFN    R R+SG+                   N GRGRG  P 
Sbjct: 110 AGYNTFRTSMHTREKSNFNPNVGRGRASGKNHFSKAKSPNFAPTGNYSTNVGRGRGLLPL 169

Query: 63  --------------------------------RMNYHFQGCHPPTQLATMVVSQNVAYCN 122
                                           RMNY FQG HPP QL  MV + N A   
Sbjct: 170 APTGKSSQEGFSSTIFCQICLKIGHSALDCFNRMNYSFQGRHPPIQLTAMVANHNYATL- 229

Query: 123 TTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNLSIASEYAGDDQVSVGSGHSLPISHNDS 129
                    A S+ +WLTDSGCNAH+TADL  LS ASEY+GD+Q+ VG+G SLPI+H  S
Sbjct: 230 ---------ASSNPSWLTDSGCNAHVTADLDQLSTASEYSGDEQIGVGTGQSLPIAHTSS 279

[Close]

BLAST of Lag0028567 vs. NCBI nr
Match: KAE8645659.1 (hypothetical protein Csa_020439 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 41  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSN 100
           RMNY+FQG HPP QLA MV SQN A+ +  +SS           LTDSGCN H+T+D++ 
Sbjct: 311 RMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSS----------LTDSGCNTHITSDMNY 370

Query: 101 LSIASEYAGDDQVSVGSGHSLPISHN 127
           +S+A EY G++QV VG+G + PISH+
Sbjct: 371 VSLAPEYNGEEQVGVGNGQTRPISHS 386

[Close]

BLAST of Lag0028567 vs. NCBI nr
Match: XP_011658579.1 (uncharacterized protein LOC105436058 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 45/86 (52.33%), Postives = 60/86 (69.77%), Query Frame = 0


Query: 41  RMNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSN 100
           RMNY+FQG HPP QLA MV SQN A+ +  +SS           LTDSGCN H+T+D++ 
Sbjct: 311 RMNYNFQGRHPPQQLAAMVASQNNAFLSIVNSSS----------LTDSGCNTHITSDMNY 370

Query: 101 LSIASEYAGDDQVSVGSGHSLPISHN 127
           +S+A EY G++QV VG+G + PISH+
Sbjct: 371 VSLAPEYNGEEQVGVGNGQTRPISHS 386

[Close]

BLAST of Lag0028567 vs. NCBI nr
Match: XP_022150845.1 (uncharacterized protein LOC111018892 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 4.5e-13
Identity = 58/120 (48.33%), Postives = 69/120 (57.50%), Query Frame = 0


Query: 16  SSGNF-------NRARSSGRGRNQGRGRGFNPRMNYHFQGCHPPTQLATMVVSQNVAYCN 75
           SSGNF       NR+     G+          RMN+HFQG HPP QLA MV  QN +Y  
Sbjct: 310 SSGNFFTSFQADNRSPCQICGKLGHTALDCYNRMNFHFQGRHPPPQLAAMVAVQNNSYLA 369

Query: 76  TTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL---SIASEYAGDDQVSVGSGHSLPISH 126
                   G  S +TWL DS CN H+TADLSNL   SIAS+Y G++ +SVGSG S PI+H
Sbjct: 370 V-------GNSSPTTWLADSECNTHMTADLSNLSIASIASDYNGEENISVGSGQSFPITH 422

[Close]

BLAST of Lag0028567 vs. NCBI nr
Match: KAA0052833.1 (uncharacterized protein E6C27_scaffold773G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-11
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 0


Query: 42  MNYHFQGCHPPTQLATMVVSQNVAYCNTTSSSVNNGAGSSSTWLTDSGCNAHLTADLSNL 101
           MNY++QG HPP  L  +V  QN  Y NT           S+ WL DSGCNA +TA+  NL
Sbjct: 1   MNYNYQGKHPPQNLVAVVAQQNSQYLNTQ-------IYPSNAWLADSGCNALVTANFGNL 60

Query: 102 SIASEYAGDDQVSVGSGHSLPISH 126
            IA+ Y+G+D +SV SG SLPI+H
Sbjct: 61  YIANGYSGEDSISVASGQSLPITH 77

The following BLAST results are available for this feature:

BLAST of Lag0028567 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156563.1	2.4e-14	37.78	uncharacterized protein LOC111023438 [Momordica charantia]	[more]
KAE8645659.1	2.0e-13	52.33	hypothetical protein Csa_020439 [Cucumis sativus]	[more]
XP_011658579.1	2.0e-13	52.33	uncharacterized protein LOC105436058 [Cucumis sativus]	[more]
XP_022150845.1	4.5e-13	48.33	uncharacterized protein LOC111018892 [Momordica charantia]	[more]
KAA0052833.1	2.5e-11	50.00	uncharacterized protein E6C27_scaffold773G00310 [Cucumis melo var. makuwa]	[more]

BLAST of Lag0028567 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0028567.1	Lag0028567.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding