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Lag0028556 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGATGAAGGGCCAAGAGGCCTCATTGTCAAATATGGAAAAAGAGACTACTTGGTGGAAAAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATATTCGTCTGGAAAACTTTTCACAACTTCATCCCAACCATAGTAAACTTATGGAATCATCATGTATCGGTTAACGGGAATTGCCCGACTTGCCAGAAGGAGATGGAGACTACAGACCATGCCCTATTTCAGTGTACGAGGGCTCGGGAGGTATGGGAAATTATTTATCCACCGATGATGAGGAATTTATGGGTTAATATGGATATCAAAGACCGCTGGTTGAGCTTGGCTGACAATTCCATGGAGGTCTTAGAGCGTATTTTGTGGGGGCCTGGTCAATTTGGAACGACAGGAATAACTCGTTACATCAACGTCAGATCCCTAGTCCAATGCTTAGAAGTGAATGGATTAATGACTATCTGTCAGAGTTCTTGAAGGCCAACCCGAAAAGTGGTACTATTGCTCAAACGGAGGAAGATATTGTTAATATAATTTCAGACGGTGGAGATCTTATTATGCACACTGACGCATTTGTCATGGAAACACAGAGTAAATGCGGTATTGGAATAGTATTGCGTGATAAACAGGGGCATCTCAAGGCGGTGCAGAATCTATCTTCTCAGGCAGCTAACTCTCCTTTGAATGTGCAGCGATACTCGAAGGGAAGCGATAGCGATACTCGAAGGGATGCATCTGGCTAG ATGATGAAGGGCCAAGAGGCCTCATTGTCAAATATGGAAAAAGAGACTACTTGGTGGAAAAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATATTCGTCTGGAAAACTTTTCACAACTTCATCCCAACCATAGTAAACTTATGGAATCATCATGTATCGGTTAACGGGAATTGCCCGACTTGCCAGAAGGAGATGGAGACTACAGACCATGCCCTATTTCAGTGTACGAGGGCTCGGGAGGTATGGGAAATTATTTATCCACCGATGATGAGGAATTTATGGGTTAATATGGATATCAAAGACCGCTGGTTGAGCTTGGCTGACAATTCCATGGAGATCCCTAGTCCAATGCTTAGAAGTGAATGGATTAATGACTATCTGTCAGAGTTCTTGAAGGCCAACCCGAAAAGTGGTACTATTGCTCAAACGGAGGAAGATATTGTTAATATAATTTCAGACGGTGGAGATCTTATTATGCACACTGACGCATTTGTCATGGAAACACAGAGTAAATGCGGTATTGGAATAGTATTGCGTGATAAACAGGGGCATCTCAAGGCGGTGCAGAATCTATCTTCTCAGGCAGCTAACTCTCCTTTGAATGTGCAGCGATACTCGAAGGGAAGCGATAGCGATACTCGAAGGGATGCATCTGGCTAG ATGATGAAGGGCCAAGAGGCCTCATTGTCAAATATGGAAAAAGAGACTACTTGGTGGAAAAGGGTGTGGAAGATGAGAGTGCCTAGCAAAGTGAAAATATTCGTCTGGAAAACTTTTCACAACTTCATCCCAACCATAGTAAACTTATGGAATCATCATGTATCGGTTAACGGGAATTGCCCGACTTGCCAGAAGGAGATGGAGACTACAGACCATGCCCTATTTCAGTGTACGAGGGCTCGGGAGGTATGGGAAATTATTTATCCACCGATGATGAGGAATTTATGGGTTAATATGGATATCAAAGACCGCTGGTTGAGCTTGGCTGACAATTCCATGGAGATCCCTAGTCCAATGCTTAGAAGTGAATGGATTAATGACTATCTGTCAGAGTTCTTGAAGGCCAACCCGAAAAGTGGTACTATTGCTCAAACGGAGGAAGATATTGTTAATATAATTTCAGACGGTGGAGATCTTATTATGCACACTGACGCATTTGTCATGGAAACACAGAGTAAATGCGGTATTGGAATAGTATTGCGTGATAAACAGGGGCATCTCAAGGCGGTGCAGAATCTATCTTCTCAGGCAGCTAACTCTCCTTTGAATGTGCAGCGATACTCGAAGGGAAGCGATAGCGATACTCGAAGGGATGCATCTGGCTAG MMKGQEASLSNMEKETTWWKRVWKMRVPSKVKIFVWKTFHNFIPTIVNLWNHHVSVNGNCPTCQKEMETTDHALFQCTRAREVWEIIYPPMMRNLWVNMDIKDRWLSLADNSMEIPSPMLRSEWINDYLSEFLKANPKSGTIAQTEEDIVNIISDGGDLIMHTDAFVMETQSKCGIGIVLRDKQGHLKAVQNLSSQAANSPLNVQRYSKGSDSDTRRDASG Homology
BLAST of Lag0028556 vs. NCBI nr
Match: XP_042939545.1 (uncharacterized protein LOC122274584 [Carya illinoinensis]) HSP 1 Score: 96.7 bits (239), Expect = 2.7e-16 Identity = 63/217 (29.03%), Postives = 104/217 (47.93%), Query Frame = 0
BLAST of Lag0028556 vs. NCBI nr
Match: KAF4395712.1 (hypothetical protein G4B88_013486 [Cannabis sativa]) HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15 Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 0
BLAST of Lag0028556 vs. NCBI nr
Match: KAF4386115.1 (hypothetical protein F8388_016367 [Cannabis sativa]) HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15 Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 0
BLAST of Lag0028556 vs. NCBI nr
Match: XP_030486818.1 (uncharacterized protein LOC115703724 [Cannabis sativa]) HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15 Identity = 58/206 (28.16%), Postives = 95/206 (46.12%), Query Frame = 0
BLAST of Lag0028556 vs. NCBI nr
Match: KAF4359769.1 (hypothetical protein F8388_008331 [Cannabis sativa]) HSP 1 Score: 94.0 bits (232), Expect = 1.8e-15 Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1) HSP 1 Score: 46.2 bits (108), Expect = 5.5e-04 Identity = 24/89 (26.97%), Postives = 41/89 (46.07%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy TrEMBL
Match: A0A803PQ54 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 102.1 bits (253), Expect = 3.1e-18 Identity = 66/210 (31.43%), Postives = 93/210 (44.29%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy TrEMBL
Match: A0A803NZC3 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17 Identity = 62/222 (27.93%), Postives = 105/222 (47.30%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy TrEMBL
Match: A0A803QG04 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16 Identity = 64/223 (28.70%), Postives = 98/223 (43.95%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy TrEMBL
Match: A0A803Q6M0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16 Identity = 54/185 (29.19%), Postives = 93/185 (50.27%), Query Frame = 0
BLAST of Lag0028556 vs. ExPASy TrEMBL
Match: A0A7J6HKE1 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_013486 PE=4 SV=1) HSP 1 Score: 94.4 bits (233), Expect = 6.5e-16 Identity = 54/187 (28.88%), Postives = 95/187 (50.80%), Query Frame = 0
BLAST of Lag0028556 vs. TAIR 10
Match: AT3G09510.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 57.4 bits (137), Expect = 1.7e-08 Identity = 23/83 (27.71%), Postives = 44/83 (53.01%), Query Frame = 0
BLAST of Lag0028556 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 55.1 bits (131), Expect = 8.5e-08 Identity = 26/84 (30.95%), Postives = 42/84 (50.00%), Query Frame = 0
BLAST of Lag0028556 vs. TAIR 10
Match: AT2G02650.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 47.0 bits (110), Expect = 2.3e-05 Identity = 19/63 (30.16%), Postives = 31/63 (49.21%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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