Lag0028555 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0028555
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon protein
Locationchr8: 24808969 .. 24809508 (-)
RNA-Seq ExpressionLag0028555
SyntenyLag0028555
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTTTATTTTCGTCTTCCTTGGGTGGGAAAGATCGACATCAAACTCCAAAGTTCTTCACGATGCAGTTTCACGATCGACCAGGTTAAAGGTTTCAAGGGGTTACTACTACTTGTGCGATGTCACCTATCCAAATGCAGAAGGATTTCTGGCATCCTATTGGAGCACACGATACCACCTTACGAAATGACAAGGAGGGAACCCAACCAACCCGAAAGAACTCTTCAATATGAGACATTCCTCCGTGAAATATCATAGAGCGAGCATTCGGTATGTTGAAGGATCGATGGGCAATCCAATGTGGCAAGTCGTACTATCCTGTCGATGTGCAGGTAAAAACGATAACTGCTTGTTGTTATCTCCACAACTTGATTATTCAAGAAATGGGGTCAGATCCTAGTTTTGAGGCCGCTCATCTCGGCAACCCAGATTCAAATGGGATGGCCACAGACAGGATCACTTTCGTGGAGACCACAACCGCATGGAGTACATGGTGGGATGATTTGGCTAACCAAATGTTCTTTGATTTGGAATAG

mRNA sequence

ATGGCGAGTTTATTTTCGTCTTCCTTGGGTGGGAAAGATCGACATCAAACTCCAAAGTTCTTCACGATGCAGTTTCACGATCGACCAGAGCGAGCATTCGGTATGTTGAAGGATCGATGGGCAATCCAATGTGGCAAGTCGTACTATCCTGTCGATGTGCAGGTAAAAACGATAACTGCTTGTTGTTATCTCCACAACTTGATTATTCAAGAAATGGGGTCAGATCCTAGTTTTGAGGCCGCTCATCTCGGCAACCCAGATTCAAATGGGATGGCCACAGACAGGATCACTTTCGTGGAGACCACAACCGCATGGAGTACATGGTGGGATGATTTGGCTAACCAAATGTTCTTTGATTTGGAATAG

Coding sequence (CDS)

ATGGCGAGTTTATTTTCGTCTTCCTTGGGTGGGAAAGATCGACATCAAACTCCAAAGTTCTTCACGATGCAGTTTCACGATCGACCAGAGCGAGCATTCGGTATGTTGAAGGATCGATGGGCAATCCAATGTGGCAAGTCGTACTATCCTGTCGATGTGCAGGTAAAAACGATAACTGCTTGTTGTTATCTCCACAACTTGATTATTCAAGAAATGGGGTCAGATCCTAGTTTTGAGGCCGCTCATCTCGGCAACCCAGATTCAAATGGGATGGCCACAGACAGGATCACTTTCGTGGAGACCACAACCGCATGGAGTACATGGTGGGATGATTTGGCTAACCAAATGTTCTTTGATTTGGAATAG

Protein sequence

MASLFSSSLGGKDRHQTPKFFTMQFHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFDLE
Homology
[Close]
BLAST of Lag0028555 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 0 

Query: 30  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSN 89
           ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+
Sbjct: 235 ERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLGEDDSS 294

Query: 90  GMATDRITFVETTTAWSTWWDDLANQMFFD 120
            M  + I FVETT  W+ W D+LANQMF D
Sbjct: 295 EMNIENINFVETTNVWTEWRDNLANQMFED 324

[Close]
BLAST of Lag0028555 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.5e-24
Identity = 57/90 (63.33%), Postives = 66/90 (73.33%), Query Frame = 0 

Query: 30  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSN 89
           ERAFG LK RWAI  G+SYYPVD+Q K ITACC LHNLI +EM S+ +FE  HLG  DS+
Sbjct: 213 ERAFGSLKSRWAILRGRSYYPVDIQCKIITACCLLHNLIHREMSSEATFEEPHLGEDDSS 272

Query: 90  GMATDRITFVETTTAWSTWWDDLANQMFFD 120
            M  + I FVETT  W+ W D+LANQMF D
Sbjct: 273 EMNIENINFVETTNVWTEWRDNLANQMFED 302

[Close]
BLAST of Lag0028555 vs. NCBI nr
Match: KAA0049607.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 3.1e-22
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 0 

Query: 10  GGKDRHQTPKFFTMQ---FHDRPERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHN 69
           GG     + + F M+   F +  ERAFG LK  WAI  G+SYY VD+Q K IT CC LHN
Sbjct: 107 GGNPPKCSKELFNMRHSSFRNIIERAFGSLKSWWAILRGRSYYLVDIQCKIITTCCLLHN 166

Query: 70  LIIQEMGSDPSFEAAHLGNPDSNGMATDRITFVETTTAWSTWWDDLANQMFFD 120
           LI +EMGS+ +FE  HL   DS+ M  + I FVETT  W+ W D+LANQMF D
Sbjct: 167 LIHREMGSEATFEEPHLSEGDSSEMNIENINFVETTNVWTEWRDNLANQMFED 219

[Close]
BLAST of Lag0028555 vs. NCBI nr
Match: KAA0065306.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 6.9e-22
Identity = 54/90 (60.00%), Postives = 64/90 (71.11%), Query Frame = 0 

Query: 30  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSN 89
           ERAFG L  RW I  G+SYY VD+Q K ITACC LHNLI +EMGS+ +F+  HLG  DS+
Sbjct: 222 ERAFGSLNCRWTILQGRSYYLVDIQCKIITACCLLHNLIHREMGSEATFKEPHLGEGDSS 281

Query: 90  GMATDRITFVETTTAWSTWWDDLANQMFFD 120
            M  + I FVETT  W+ W D+LANQMF D
Sbjct: 282 EMNIENINFVETTNVWTEWRDNLANQMFED 311

[Close]
BLAST of Lag0028555 vs. NCBI nr
Match: TYK06362.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-21
Identity = 53/90 (58.89%), Postives = 63/90 (70.00%), Query Frame = 0 

Query: 30  ERAFGMLKDRWAIQCGKSYYPVDVQVKTITACCYLHNLIIQEMGSDPSFEAAHLGNPDSN 89
           ERAFG LK  WAI  G+SYYPVD+Q K IT CC LH LI +E+GS  +FE  HLG  DS+
Sbjct: 160 ERAFGSLKGWWAILRGRSYYPVDIQCKIITTCCLLHYLIHRELGSKATFEEPHLGEGDSS 219

Query: 90  GMATDRITFVETTTAWSTWWDDLANQMFFD 120
            M  + I F+ETT  W+ W D+LANQMF D
Sbjct: 220 EMNIENINFMETTNVWTEWRDNLANQMFED 249

The following BLAST results are available for this feature:
BLAST of Lag0028555 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048191.12.5e-2463.33retrotransposon protein [Cucumis melo var. makuwa][more]
TYK08067.12.5e-2463.33retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0049607.13.1e-2252.21retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065306.16.9e-2260.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK06362.12.0e-2158.89retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lag0028555 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0028555.1Lag0028555.1mRNA