
Lag0028546 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGATCAATGAACCATTATGCAGAGGCCTAACTCTAAATGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACTAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCATGCCCCAAACTGAAGAATCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGAAAGAAACATTTTCACACAAATAACAAAGGATACGAGGGAATTAGAGGAGGAAGAGGACGATTCGGGTACAAACAAAGAAGATGGCAACCATGGCAATCCAATGCATGGGAGGAAGAAGAAGAAAACATACATGGAGAGTCAGAGGACTCCCAAAGCTCCGATGAAAGCGGTGACGAACGGCAGCTGGAAAACAACCGTCGGTCGTCTACTACACCCTTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACAGAGATAATGGGTATTAAATGTCCCATTTCCTTTGATAACGCTTCTCTTGTGGAGAATTTCCCTTTTAATGCAGGCAGCGTGATTCACGGCAACGAGAATGGAGAAAATAATGGCTGCTCCGTTTTAGAAAGTTTGAAATCTTGCGAATCAAATATGGGAAAAGGGAAGAGAAGAAACGACTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAGAGTTGGTGGGCTTAGGTCCAATATCATGACCCAACCCACTTCCCAATTGATGGATGTCACGCTGGTAACTAATTTGGGTCTCAAACCCAACTCAAGCCCACATGAAACTTCAAAAAAATTTAGGCCAATTGATGCAAACTCAAGCCCAAAATCAAGTCCAACTAAAGCTTCACCAGAAGTTCCAACGGACCAAACCTCAACACTGATTTTCAGCAAGGATTTTGGTCCAAAGAACATGAAACCGCGGGCAATCAACCCAGTCCAATTGCATGGTGAAGATAGAATGGACGAAGATTTTTTGAAATCCAATCAACAACCGACAAAGAAAATCATGGGGAATTTACTAACGGAGATGAGAAACATGGAGCAATTGAAAATCCAACAAACAGTGAAAAAAGACAATCCAGAGGATGGAAGAGGGTTAATAGGTCGTGGGATAAAATCAAGACCAATTTCCCCATGCAACAAACAGTTCAGTTCACTCGTAAGAAGAGGGTCGTTGATGATGACGGCCTAGAAAGGTGCCCAAGCAAGAGACTCAAATCACCACTTCCTCCAAACGATGGAAGTCTATTGGCGGAGCCTGTTGAGCAGGCCCGTCGGGAGCCATGA ATGAAGATCAATGAACCATTATGCAGAGGCCTAACTCTAAATGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACTAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCATGCCCCAAACTGAAGAATCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGAAAGAAACATTTTCACACAAATAACAAAGGATACGAGGGAATTAGAGGAGGAAGAGGACGATTCGGGTACAAACAAAGAAGATGGCAACCATGGCAATCCAATGCATGGGAGGAAGAAGAAGAAAACATACATGGAGAGTCAGAGGACTCCCAAAGCTCCGATGAAAGCGGTGACGAACGGCAGCTGGAAAACAACCGTCGGTCGTCTACTACACCCTTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACAGAGATAATGGGTATTAAATGTCCCATTTCCTTTGATAACGCTTCTCTTGTGGAGAATTTCCCTTTTAATGCAGGCAGCGTGATTCACGGCAACGAGAATGGAGAAAATAATGGCTGCTCCGTTTTAGAAAGTTTGAAATCTTGCGAATCAAATATGGGAAAAGGGAAGAGAAGAAACGACTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAGAGTTGAATGGACGAAGATTTTTTGAAATCCAATCAACAACCGACAAAGAAAATCATGGGGAATTTACTAACGGAGATGAGAAACATGGAGCAATTGAAAATCCAACAAACAGTGAAAAAAGACAATCCAGAGGATGGAAGAGGGTTAATAGGTCGTGGGATAAAATCAAGACCAATTTCCCCATGCAACAAACAGTTCAGTTCACTCGTAAGAAGAGGGTCGTTGATGATGACGGCCTAGAAAGGTGCCCAAGCAAGAGACTCAAATCACCACTTCCTCCAAACGATGGAAGTCTATTGGCGGAGCCTGTTGAGCAGGCCCGTCGGGAGCCATGA ATGAAGATCAATGAACCATTATGCAGAGGCCTAACTCTAAATGGCGGACCAACTGGAAAAATTTTGGCAGTGATTAAATATGAGAGACTACTAGATTTTTGTTACTACTGTGGGATGATTGATCACAACGACGGATCATGCCCCAAACTGAAGAATCAAGCAAAACCAGAAAAGCAATTCGGTTCTTGGATGAGAGCTGCAACTCCCCCGAGAAAGAAACATTTTCACACAAATAACAAAGGATACGAGGGAATTAGAGGAGGAAGAGGACGATTCGGGTACAAACAAAGAAGATGGCAACCATGGCAATCCAATGCATGGGAGGAAGAAGAAGAAAACATACATGGAGAGTCAGAGGACTCCCAAAGCTCCGATGAAAGCGGTGACGAACGGCAGCTGGAAAACAACCGTCGGTCGTCTACTACACCCTTTTCCGATGAATTCTCCCCGCAATCAATGCAATCGACAGAGATAATGGGTATTAAATGTCCCATTTCCTTTGATAACGCTTCTCTTGTGGAGAATTTCCCTTTTAATGCAGGCAGCGTGATTCACGGCAACGAGAATGGAGAAAATAATGGCTGCTCCGTTTTAGAAAGTTTGAAATCTTGCGAATCAAATATGGGAAAAGGGAAGAGAAGAAACGACTGCTGTGAGGATCTAGGGCAAGGAAACTCAGTGGGGGAAAAAGAGTTGAATGGACGAAGATTTTTTGAAATCCAATCAACAACCGACAAAGAAAATCATGGGGAATTTACTAACGGAGATGAGAAACATGGAGCAATTGAAAATCCAACAAACAGTGAAAAAAGACAATCCAGAGGATGGAAGAGGGTTAATAGGTCGTGGGATAAAATCAAGACCAATTTCCCCATGCAACAAACAGTTCAGTTCACTCGTAAGAAGAGGGTCGTTGATGATGACGGCCTAGAAAGGTGCCCAAGCAAGAGACTCAAATCACCACTTCCTCCAAACGATGGAAGTCTATTGGCGGAGCCTGTTGAGCAGGCCCGTCGGGAGCCATGA MKINEPLCRGLTLNGGPTGKILAVIKYERLLDFCYYCGMIDHNDGSCPKLKNQAKPEKQFGSWMRAATPPRKKHFHTNNKGYEGIRGGRGRFGYKQRRWQPWQSNAWEEEEENIHGESEDSQSSDESGDERQLENNRRSSTTPFSDEFSPQSMQSTEIMGIKCPISFDNASLVENFPFNAGSVIHGNENGENNGCSVLESLKSCESNMGKGKRRNDCCEDLGQGNSVGEKELNGRRFFEIQSTTDKENHGEFTNGDEKHGAIENPTNSEKRQSRGWKRVNRSWDKIKTNFPMQQTVQFTRKKRVVDDDGLERCPSKRLKSPLPPNDGSLLAEPVEQARREP Homology
BLAST of Lag0028546 vs. NCBI nr
Match: OMP03234.1 (hypothetical protein COLO4_10561 [Corchorus olitorius]) HSP 1 Score: 70.9 bits (172), Expect = 2.5e-08 Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0
BLAST of Lag0028546 vs. NCBI nr
Match: XP_023888396.1 (uncharacterized protein LOC112000488 [Quercus suber]) HSP 1 Score: 68.6 bits (166), Expect = 1.2e-07 Identity = 29/72 (40.28%), Postives = 46/72 (63.89%), Query Frame = 0
BLAST of Lag0028546 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis]) HSP 1 Score: 67.8 bits (164), Expect = 2.1e-07 Identity = 34/93 (36.56%), Postives = 49/93 (52.69%), Query Frame = 0
BLAST of Lag0028546 vs. NCBI nr
Match: XP_030930480.1 (uncharacterized protein LOC115956164 [Quercus lobata]) HSP 1 Score: 66.6 bits (161), Expect = 4.7e-07 Identity = 40/103 (38.83%), Postives = 49/103 (47.57%), Query Frame = 0
BLAST of Lag0028546 vs. NCBI nr
Match: XP_021749920.1 (uncharacterized protein LOC110715641 [Chenopodium quinoa]) HSP 1 Score: 66.2 bits (160), Expect = 6.1e-07 Identity = 29/71 (40.85%), Postives = 44/71 (61.97%), Query Frame = 0
BLAST of Lag0028546 vs. ExPASy TrEMBL
Match: A0A2N9G219 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21395 PE=4 SV=1) HSP 1 Score: 71.6 bits (174), Expect = 7.0e-09 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of Lag0028546 vs. ExPASy TrEMBL
Match: A0A2N9FMM2 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16212 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 9.2e-09 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of Lag0028546 vs. ExPASy TrEMBL
Match: A0A2N9F1H4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8603 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 9.2e-09 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of Lag0028546 vs. ExPASy TrEMBL
Match: A0A2N9GU75 (RNase H domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33829 PE=4 SV=1) HSP 1 Score: 71.2 bits (173), Expect = 9.2e-09 Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 0
BLAST of Lag0028546 vs. ExPASy TrEMBL
Match: A0A1R3K847 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_10561 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 1.2e-08 Identity = 33/93 (35.48%), Postives = 50/93 (53.76%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
|