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Lag0028505 (gene) Sponge gourd (AG‐4) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGACTCTCAACGCCAACTATTCAACCTGATTAGCTTCTTCATGAACAACCACCGTAGGTTAGAAAACCAATCTCCCTACATCCGCCACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATACATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTCTGCAATTTTGTGTTCTTTGTTGAGAACGACTTCCGGGTTCGTGGGAACGGAAATCGTAGACGTGGAGGAGATGGTCGCGATGTTCTTGCACATTGTAGCTCACGATGTCAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCAGGCGAGACCGTTTCTCGACACTTCAACGCGACTTTGCAGGCCGTACTACGATTGTATGACGTTCTACTTAAGAAACCAGAACCAATCACGTCTTCCTGCCAAGATGGGAGGTGGAAATGGTTCGAGGTATGGATACTCTTTGTTAGTAGACAACATGGACATCTTACAATGTCTTTTTGACACGTGTAATGCGATGTGCAAACAGAATTGTCTAGGTGCATTGGACGGTACATACATAAAAGTTCATGTTAGTGCAGCTGATTGACCAAGATATAGGACACGTAAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCACCCAAAGGTGAATTCATTTTCGTTATGCCGGGATGGGAAGGTTCAGCTGCTGATTCTCGTGTACTAAGGGATGCAATATCGCGTCCAAATGGACTAATAGTGCCGAAGGGTATGAAACGAACTACGAATCTAAAATATGAACACTCATTAAATCCTTAGGTATTAACTTTCGTTTCTGAACAGGCTATTACTACCTTTGTGATGTCGGTTACCCAAACGCAGAAGGTTTCTTGGCACCGTACAGATGA ATGGCTGACTCTCAACGCCAACTATTCAACCTGATTAGCTTCTTCATGAACAACCACCGTAGGTTAGAAAACCAATCTCCCTACATCCGCCACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATACATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTCTGCAATTTTGTGTTCTTTGTTGAGAACGACTTCCGGGTTCGTGGGAACGGAAATCGTAGACGTGGAGGAGATGGTCGCGATGTTCTTGCACATTGTAGCTCACGATGTCAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCAGGCGAGACCGTTTCTCGACACTTCAACGCGACTTTGCAGGCCGTACTACGATTGTATGACGTTCTACTTAAGAAACCAGAACCAATCACGTCTTCCTGCCAAGATGGGAGGTGGAAATGGTTCGAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCACCCAAAGGTGAATTCATTTTCGTTATGCCGGGATGGGAAGGTTCAGCTGCTGATTCTCGTGTACTAAGGGATGCAATATCGCGTCCAAATGGACTAATAGTGCCGAAGGGCTATTACTACCTTTGTGATGTCGGTTACCCAAACGCAGAAGGTTTCTTGGCACCGTACAGATGA ATGGCTGACTCTCAACGCCAACTATTCAACCTGATTAGCTTCTTCATGAACAACCACCGTAGGTTAGAAAACCAATCTCCCTACATCCGCCACCAGATAAGGCAATTAGCCTGCTTCCGGTTGATACATGAAAGTGACTTGTGCTGTCGAGAAAGCACCAGGATGGATAGGAGATGTTCTGCAATTTTGTGTTCTTTGTTGAGAACGACTTCCGGGTTCGTGGGAACGGAAATCGTAGACGTGGAGGAGATGGTCGCGATGTTCTTGCACATTGTAGCTCACGATGTCAAGAATCGAGTCATTAGAAGACAGTTTGCACGGTCAGGCGAGACCGTTTCTCGACACTTCAACGCGACTTTGCAGGCCGTACTACGATTGTATGACGTTCTACTTAAGAAACCAGAACCAATCACGTCTTCCTGCCAAGATGGGAGGTGGAAATGGTTCGAGGGTGAGATTGCAACAAATGTATTGGGCGTTGTGTCACCCAAAGGTGAATTCATTTTCGTTATGCCGGGATGGGAAGGTTCAGCTGCTGATTCTCGTGTACTAAGGGATGCAATATCGCGTCCAAATGGACTAATAGTGCCGAAGGGCTATTACTACCTTTGTGATGTCGGTTACCCAAACGCAGAAGGTTTCTTGGCACCGTACAGATGA MADSQRQLFNLISFFMNNHRRLENQSPYIRHQIRQLACFRLIHESDLCCRESTRMDRRCSAILCSLLRTTSGFVGTEIVDVEEMVAMFLHIVAHDVKNRVIRRQFARSGETVSRHFNATLQAVLRLYDVLLKKPEPITSSCQDGRWKWFEGEIATNVLGVVSPKGEFIFVMPGWEGSAADSRVLRDAISRPNGLIVPKGYYYLCDVGYPNAEGFLAPYR Homology
BLAST of Lag0028505 vs. NCBI nr
Match: KAA0056561.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 304.7 bits (779), Expect = 6.5e-79 Identity = 151/231 (65.37%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Lag0028505 vs. NCBI nr
Match: KAA0031556.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0033743.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0036353.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038064.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0038976.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 304.7 bits (779), Expect = 6.5e-79 Identity = 151/231 (65.37%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Lag0028505 vs. NCBI nr
Match: KAA0046727.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0052100.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0056032.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0059561.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0065497.1 retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 303.5 bits (776), Expect = 1.5e-78 Identity = 149/243 (61.32%), Postives = 177/243 (72.84%), Query Frame = 0
BLAST of Lag0028505 vs. NCBI nr
Match: KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 303.5 bits (776), Expect = 1.5e-78 Identity = 149/243 (61.32%), Postives = 177/243 (72.84%), Query Frame = 0
BLAST of Lag0028505 vs. NCBI nr
Match: KAA0064809.1 (retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 303.1 bits (775), Expect = 1.9e-78 Identity = 150/231 (64.94%), Postives = 172/231 (74.46%), Query Frame = 0
BLAST of Lag0028505 vs. ExPASy TrEMBL
Match: A0A5D3D7X8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001080 PE=3 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 3.2e-79 Identity = 151/231 (65.37%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Lag0028505 vs. ExPASy TrEMBL
Match: A0A5A7UST8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold288G00660 PE=3 SV=1) HSP 1 Score: 304.7 bits (779), Expect = 3.2e-79 Identity = 151/231 (65.37%), Postives = 173/231 (74.89%), Query Frame = 0
BLAST of Lag0028505 vs. ExPASy TrEMBL
Match: A0A5A7TXW1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00370 PE=3 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 7.0e-79 Identity = 149/243 (61.32%), Postives = 177/243 (72.84%), Query Frame = 0
BLAST of Lag0028505 vs. ExPASy TrEMBL
Match: A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 7.0e-79 Identity = 149/243 (61.32%), Postives = 177/243 (72.84%), Query Frame = 0
BLAST of Lag0028505 vs. ExPASy TrEMBL
Match: A0A5A7VH63 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001170 PE=3 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 9.2e-79 Identity = 150/231 (64.94%), Postives = 172/231 (74.46%), Query Frame = 0
BLAST of Lag0028505 vs. TAIR 10
Match: AT5G41980.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 121.3 bits (303), Expect = 9.5e-28 Identity = 69/205 (33.66%), Postives = 106/205 (51.71%), Query Frame = 0
BLAST of Lag0028505 vs. TAIR 10
Match: AT5G28730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 496 Blast hits to 496 proteins in 68 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 23; Plants - 470; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 85.5 bits (210), Expect = 5.8e-17 Identity = 60/189 (31.75%), Postives = 89/189 (47.09%), Query Frame = 0
BLAST of Lag0028505 vs. TAIR 10
Match: AT1G43722.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28730.1); Has 924 Blast hits to 912 proteins in 109 species: Archae - 0; Bacteria - 0; Metazoa - 222; Fungi - 31; Plants - 661; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). ) HSP 1 Score: 85.1 bits (209), Expect = 7.6e-17 Identity = 60/216 (27.78%), Postives = 88/216 (40.74%), Query Frame = 0
BLAST of Lag0028505 vs. TAIR 10
Match: AT5G35695.1 (CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 53.9 bits (128), Expect = 1.9e-07 Identity = 26/53 (49.06%), Postives = 33/53 (62.26%), Query Frame = 0
BLAST of Lag0028505 vs. TAIR 10
Match: AT5G28950.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 448 Blast hits to 446 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 31; Fungi - 21; Plants - 396; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 51.2 bits (121), Expect = 1.2e-06 Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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