Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTCCGCTTTCCAACAAGCATCCCTCTCCTAATGATGCATTGACTCAAGCTTTGG GTACTCCATAATACAATGGACGTGTACGTGGGGTTGGTGGTTTTGTTACTCCTACAACTTACTTTCACACAGTCTTAAAGAATGATAAAAACAAAGAAATCGTTCATGAGAATGAAGCACTTCATCGACATTTGAAAGAATTGGAAGGTCAAATTCAAAAGACAGGATCTACACCAACATTTGAACATGGAAGTTGCTCCAAGTAAGTTTCACAAGGTGAAAATGAATCTCAAGAGAAGTTCGTCCATGATCAAGATGTGCGGATCTTGAAGGTGAGTGACACTAATCAACATTTGGACGATATCAAG GTAATTAAAGAAAGAAGTTTGTATAAACACTAGTATTGATAATTTGTGTATGTTGAACTATTATTGAGAATGATCAGGAGACTATTTATTCAAAAGTTGGAAAATGCTCAAAATGTTGGGATCTTGAAGGTGAGTGACACTAATAATAAACATTTGAAGGATATCAATAGTGGATGCGAAAAGAAGCAAACATCAACAAAG GTAATTAAATTTATCGGACATAATTATATTTAGATATAAGTTAAATGTCTTTATATATGCTTTACATTTGACATAGGAGAAAACTTCAACGAAGATGGCTAAGGAGGAAGAAATTGTTAATGTGTCAATATCTTTGAAGTTTATTCTAAG GTTTGTTGAAAAGGTAATGCCCAATGACAATGTTATTTCCTTTCAACTACCTGTTGAGCTTTTTGGTTTCAGTCGAAAGAGTTATATCTTGCAAGAAGATATAATTGACGTTTGCAACATGCAACAAGTTAAGACATTATCAATGGTGGCTTATATGGCGTAA mRNA sequence
ATGGGTCCGCTTTCCAACAAGCATCCCTCTCCTAATGATGCATTGACTCAAGCTTTGGGTGAAAATGAATCTCAAGAGAAGTTCGTCCATGATCAAGATGTGCGGATCTTGAAGGTGAGTGACACTAATCAACATTTGGACGATATCAAGGTGAGTGACACTAATAATAAACATTTGAAGGATATCAATAGTGGATGCGAAAAGAAGCAAACATCAACAAAGGAGAAAACTTCAACGAAGATGGCTAAGGAGGAAGAAATTGTTAATGTGTCAATATCTTTGAAGTTTATTCTAAGTCGAAAGAGTTATATCTTGCAAGAAGATATAATTGACGTTTGCAACATGCAACAAGTTAAGACATTATCAATGGTGGCTTATATGGCGTAA Coding sequence (CDS)
ATGGGTCCGCTTTCCAACAAGCATCCCTCTCCTAATGATGCATTGACTCAAGCTTTGGGTGAAAATGAATCTCAAGAGAAGTTCGTCCATGATCAAGATGTGCGGATCTTGAAGGTGAGTGACACTAATCAACATTTGGACGATATCAAGGTGAGTGACACTAATAATAAACATTTGAAGGATATCAATAGTGGATGCGAAAAGAAGCAAACATCAACAAAGGAGAAAACTTCAACGAAGATGGCTAAGGAGGAAGAAATTGTTAATGTGTCAATATCTTTGAAGTTTATTCTAAGTCGAAAGAGTTATATCTTGCAAGAAGATATAATTGACGTTTGCAACATGCAACAAGTTAAGACATTATCAATGGTGGCTTATATGGCGTAA Protein sequence
MGPLSNKHPSPNDALTQALGENESQEKFVHDQDVRILKVSDTNQHLDDIKVSDTNNKHLKDINSGCEKKQTSTKEKTSTKMAKEEEIVNVSISLKFILSRKSYILQEDIIDVCNMQQVKTLSMVAYMA
Homology
BLAST of Lag0028475 vs. NCBI nr
Match:
KAA0056763.1 (hypothetical protein E6C27_scaffold486G00410 [Cucumis melo var. makuwa])
HSP 1 Score: 60.5 bits (145), Expect = 1.3e-05
Identity = 54/159 (33.96%), Postives = 73/159 (45.91%), Query Frame = 0
Query: 10 SPNDALTQALGENESQEK------------FVHDQDVRILKVSDTNQHLDDIKVSDTNNK 69 SPND LTQALG E + + H R K DT Q + I ++ K Sbjct: 1037 SPNDVLTQALGTPEYDGRVRGVGGFITPTIYFHQAKPRKSKKVDTTQQI--IDENEALRK 1096 Query: 70 HLKDINSGCEKKQTS-----TKEKTSTKMAKEEEIVNVSISLKFIL-------------- 128 ++++ + TS +K K K+ E N+ I LK+IL Sbjct: 1097 RIRELEQKVQSIPTSEHGSCSKSKVQEKVKFTSEPSNLPIQLKYILRYAEGVMVDGSSFS 1156
The following BLAST results are available for this feature:
Match Name E-value Identity Description
KAA0056763.1 1.3e-05 33.96 hypothetical protein E6C27_scaffold486G00410 [Cucumis melo var. makuwa] [more]
Match Name E-value Identity Description
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
A T G G G T C C G C T T T C C A A C A A G C A T C C C T C T C C T A A T G A T G C A T T G A C T C A A G C T T T G G G T G A A A A T G A A T C T C A A G A G A A G T T C G T C C A T G A T C A A G A T G T G C G G A T C T T G A A G G T G A G T G A C A C T A A T C A A C A T T T G G A C G A T A T C A A G G T G A G T G A C A C T A A T A A T A A A C A T T T G A A G G A T A T C A A T A G T G G A T G C G A A A A G A A G C A A A C A T C A A C A A A G G A G A A A A C T T C A A C G A A G A T G G C T A A G G A G G A A G A A A T T G T T A A T G T G T C A A T A T C T T T G A A G T T T A T T C T A A G T C G A A A G A G T T A T A T C T T G C A A G A A G A T A T A A T T G A C G T T T G C A A C A T G C A A C A A G T T A A G A C A T T A T C A A T G G T G G C T T A T A T G G C G T A A 50 100 150 200 250 300 350 Score = Score = Score = Sequence mobidb-lite mobidb-lite mobidb-lite
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 60..81
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 9..23
None No IPR available MOBIDB_LITE mobidb-lite disorder_prediction coord: 1..26
Relationships
The following mRNA feature(s) are a part of this gene: